Wall clock time and date at job start Mon Mar 30 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.32668 * 119.92203 * 96.95097 * 3 2 1 5 5 C 1.31551 * 121.87820 * 179.97438 * 4 3 2 6 6 C 1.39183 * 121.49378 * 359.97199 * 5 4 3 7 7 Cl 1.73598 * 120.17294 * 180.02562 * 6 5 4 8 8 C 1.37943 * 119.64683 * 0.02562 * 6 5 4 9 9 C 1.50700 * 120.86142 * 180.02562 * 8 6 5 10 10 F 1.39909 * 109.47082 * 120.00084 * 9 8 6 11 11 F 1.39902 * 109.46900 * 239.99834 * 9 8 6 12 12 C 1.41189 * 118.27108 * 359.74746 * 8 6 5 13 13 C 1.40811 * 120.72683 * 180.26944 * 12 8 6 14 14 H 1.08002 * 119.99843 * 43.70658 * 13 12 8 15 15 C 1.40251 * 120.00377 * 223.71093 * 13 12 8 16 16 N 1.30656 * 119.99785 * 20.88538 * 15 13 12 17 17 Si 1.86795 * 120.00218 * 200.88462 * 15 13 12 18 18 H 1.48506 * 109.47192 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47290 * 120.00031 * 17 15 13 20 20 H 1.48504 * 109.47078 * 239.99761 * 17 15 13 21 21 H 1.08000 * 119.25083 * 179.97438 * 5 4 3 22 22 H 1.08998 * 109.47476 * 0.02562 * 9 8 6 23 23 H 0.96996 * 119.99713 * 182.49552 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2297 0.1401 -1.1414 5 6 4.5445 0.1466 -1.1859 6 6 5.3117 0.0075 -0.0330 7 17 7.0449 0.0216 -0.1314 8 6 4.6876 -0.1415 1.1881 9 6 5.4915 -0.2936 2.4537 10 9 5.1806 0.7501 3.3320 11 9 5.1843 -1.5179 3.0569 12 6 3.2762 -0.1419 1.2221 13 6 2.5859 -0.2848 2.4410 14 1 2.9122 0.2616 3.3136 15 6 1.4747 -1.1366 2.5221 16 7 1.3141 -2.0866 1.6396 17 14 0.2243 -0.9131 3.8917 18 1 0.6330 0.2245 4.7544 19 1 -1.1101 -0.6341 3.3030 20 1 0.1563 -2.1525 4.7070 21 1 5.0397 0.2625 -2.1387 22 1 6.5546 -0.2625 2.2149 23 1 0.5272 -2.6527 1.6741 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238564644.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:22 Heat of formation + Delta-G solvation = -59.267726 kcal Electronic energy + Delta-G solvation = -16795.675749 eV Core-core repulsion = 13498.180050 eV Total energy + Delta-G solvation = -3297.495699 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.17760 -46.15676 -39.18032 -36.39605 -35.38058 -34.22896 -32.27252 -30.51645 -26.97177 -25.48062 -23.17598 -21.56456 -18.43027 -17.91619 -17.16542 -16.43793 -15.81505 -15.56820 -15.03623 -14.60438 -13.70803 -13.52102 -13.05428 -12.89864 -12.55208 -12.33895 -12.08130 -12.04299 -11.92130 -11.52634 -11.44955 -11.19639 -11.07726 -10.92935 -10.55429 -10.37542 -9.56514 -8.92332 -8.73777 -7.93885 -7.34056 -5.09303 1.45048 2.10512 2.43724 2.88355 2.95841 3.00252 3.64682 3.71261 3.79810 4.32981 4.46531 4.78712 4.87142 5.03223 5.33579 5.76986 5.81529 5.91540 6.13079 6.55313 6.72274 6.80867 7.05579 7.75391 7.90327 8.18693 8.63624 8.79045 9.62577 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.010284 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.133689 B = 2722.021797 C = 3612.408991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.331 3.669 3 C 0.099 3.901 4 N -0.405 5.405 5 C -0.017 4.017 6 C 0.009 3.991 7 Cl -0.086 7.086 8 C -0.226 4.226 9 C 0.333 3.667 10 F -0.204 7.204 11 F -0.194 7.194 12 C 0.142 3.858 13 C -0.436 4.436 14 H 0.108 0.892 15 C 0.081 3.919 16 N -0.752 5.752 17 Si 0.907 3.093 18 H -0.251 1.251 19 H -0.261 1.261 20 H -0.266 1.266 21 H 0.150 0.850 22 H 0.105 0.895 23 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.526 1.631 0.996 7.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C 0.017 3.983 3 C -0.044 4.044 4 N -0.114 5.114 5 C -0.176 4.176 6 C -0.021 4.021 7 Cl -0.057 7.057 8 C -0.235 4.235 9 C 0.279 3.721 10 F -0.185 7.185 11 F -0.175 7.175 12 C 0.134 3.866 13 C -0.463 4.463 14 H 0.125 0.875 15 C -0.144 4.144 16 N -0.373 5.373 17 Si 0.729 3.271 18 H -0.174 1.174 19 H -0.185 1.185 20 H -0.191 1.191 21 H 0.168 0.832 22 H 0.122 0.878 23 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.355 1.481 0.185 5.559 hybrid contribution 0.529 -0.301 1.307 1.441 sum 5.884 1.180 1.491 6.183 Atomic orbital electron populations 1.80955 1.12149 1.11495 1.09842 1.24456 0.91389 0.91438 0.91053 1.16577 0.85872 1.12150 0.89844 1.67009 1.08921 1.07150 1.28308 1.21691 0.87905 1.12097 0.95917 1.21869 0.83059 1.01407 0.95769 1.98309 1.12236 1.96899 1.98283 1.20458 0.94680 1.15660 0.92662 1.19948 0.97686 0.71827 0.82603 1.92948 1.95034 1.58819 1.71712 1.92994 1.95128 1.44500 1.84924 1.17709 0.88822 0.86797 0.93243 1.19781 1.08985 1.20625 0.96883 0.87459 1.26013 0.97590 0.92806 0.97989 1.69622 1.25652 1.10082 1.31928 0.86200 0.80248 0.80210 0.80432 1.17431 1.18515 1.19101 0.83240 0.87807 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.51 18.48 41.84 0.77 -10.73 14 2 C 0.33 8.14 11.78 -22.47 -0.26 7.87 14 3 C 0.10 2.37 6.35 -84.16 -0.53 1.83 14 4 N -0.40 -8.97 10.26 -10.38 -0.11 -9.08 14 5 C -0.02 -0.32 10.97 -17.32 -0.19 -0.51 14 6 C 0.01 0.16 6.33 -39.34 -0.25 -0.09 14 7 Cl -0.09 -1.28 27.12 -51.86 -1.41 -2.69 14 8 C -0.23 -4.73 5.45 -103.61 -0.56 -5.29 14 9 C 0.33 6.32 4.97 36.01 0.18 6.50 14 10 F -0.20 -3.98 15.91 2.25 0.04 -3.95 14 11 F -0.19 -4.04 16.69 2.25 0.04 -4.00 14 12 C 0.14 3.35 5.29 -106.38 -0.56 2.79 14 13 C -0.44 -10.40 7.30 -37.85 -0.28 -10.67 14 14 H 0.11 2.51 6.73 -52.49 -0.35 2.16 14 15 C 0.08 1.91 4.03 -17.30 -0.07 1.84 14 16 N -0.75 -18.34 11.28 55.56 0.63 -17.71 14 17 Si 0.91 18.34 29.61 -169.99 -5.03 13.30 14 18 H -0.25 -4.94 7.11 56.52 0.40 -4.54 14 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 14 20 H -0.27 -5.19 7.11 56.52 0.40 -4.79 14 21 H 0.15 2.39 8.06 -52.49 -0.42 1.97 14 22 H 0.10 1.65 6.28 -51.93 -0.33 1.32 14 23 H 0.30 6.76 8.29 -40.82 -0.34 6.43 14 LS Contribution 242.52 15.07 3.65 3.65 Total: -1.00 -25.22 242.52 -4.19 -29.41 By element: Atomic # 1 Polarization: -2.24 SS G_CDS: -0.24 Total: -2.48 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -2.53 Total: 4.28 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 1.29 Total: -37.52 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.07 Total: -7.95 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.41 Total: -2.69 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -25.22 -4.19 -29.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238564644.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.859 kcal (2) G-P(sol) polarization free energy of solvation -25.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds