Wall clock time and date at job start Mon Mar 30 2020 06:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39575 * 120.99671 * 273.84767 * 3 2 1 5 5 N 1.31578 * 120.67281 * 180.02562 * 4 3 2 6 6 C 1.32101 * 123.16243 * 359.97438 * 5 4 3 7 7 Cl 1.73603 * 119.01992 * 179.71967 * 6 5 4 8 8 C 1.37752 * 121.96322 * 359.97438 * 6 5 4 9 9 C 1.50702 * 120.54899 * 179.97438 * 8 6 5 10 10 F 1.39900 * 109.47235 * 120.00056 * 9 8 6 11 11 F 1.39898 * 109.47610 * 240.00336 * 9 8 6 12 12 C 1.41112 * 118.91228 * 0.03125 * 8 6 5 13 13 C 1.40942 * 121.36045 * 179.97438 * 12 8 6 14 14 H 1.08001 * 119.99763 * 316.20239 * 13 12 8 15 15 C 1.40311 * 120.00403 * 136.20690 * 13 12 8 16 16 N 1.30587 * 120.00458 * 153.93071 * 15 13 12 17 17 Si 1.86804 * 119.99736 * 333.93307 * 15 13 12 18 18 H 1.48505 * 109.47128 * 94.68869 * 17 15 13 19 19 H 1.48504 * 109.47147 * 214.68813 * 17 15 13 20 20 H 1.48500 * 109.47118 * 334.68962 * 17 15 13 21 21 H 1.07993 * 119.66703 * 0.02562 * 4 3 2 22 22 H 1.09006 * 109.46878 * 0.02562 * 9 8 6 23 23 H 0.97002 * 120.00341 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2868 -0.0793 1.1937 5 7 4.6026 -0.0777 1.1863 6 6 5.3189 -0.0029 0.0789 7 17 7.0510 -0.0018 0.1948 8 6 4.7324 0.0795 -1.1648 9 6 5.5806 0.1641 -2.4076 10 9 5.2997 -0.9255 -3.2389 11 9 5.2962 1.3539 -3.0862 12 6 3.3242 0.0845 -1.2560 13 6 2.6702 0.1675 -2.5017 14 1 3.0172 0.8666 -3.2482 15 6 1.5683 -0.6580 -2.7720 16 7 0.6668 -0.2810 -3.6384 17 14 1.3907 -2.2964 -1.8925 18 1 0.5275 -2.1251 -0.6962 19 1 0.7732 -3.2868 -2.8107 20 1 2.7301 -2.7798 -1.4712 21 1 2.7577 -0.1432 2.1330 22 1 6.6345 0.1467 -2.1300 23 1 -0.0947 -0.8518 -3.8255 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238569027.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:05 Heat of formation + Delta-G solvation = -51.853599 kcal Electronic energy + Delta-G solvation = -16835.831444 eV Core-core repulsion = 13538.657246 eV Total energy + Delta-G solvation = -3297.174199 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.14728 -46.13142 -39.10191 -36.41609 -35.64262 -34.38853 -32.29373 -30.94326 -27.36256 -25.21706 -23.21332 -21.38375 -18.55366 -17.92608 -17.14219 -16.42254 -16.13782 -15.62268 -15.13394 -14.93428 -13.83494 -13.54480 -13.07169 -12.96228 -12.70768 -12.52554 -12.46144 -12.23166 -11.97492 -11.82679 -11.40312 -11.17971 -10.99835 -10.71709 -10.46983 -10.16990 -9.56084 -8.88448 -8.72313 -8.24114 -7.55328 -5.28712 1.27959 1.96325 2.25636 2.86012 2.90983 3.02694 3.53548 3.59735 3.66089 4.10389 4.50351 4.70165 4.84192 4.89170 5.30491 5.44876 5.74404 5.83416 5.99594 6.41535 6.44729 6.88030 7.02679 7.67439 7.77824 8.04979 8.38025 8.56498 9.40593 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.022177 B = 0.011137 C = 0.008715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.250053 B = 2513.501640 C = 3212.002466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.286 3.714 3 C -0.210 4.210 4 C 0.212 3.788 5 N -0.574 5.574 6 C 0.253 3.747 7 Cl -0.065 7.065 8 C -0.292 4.292 9 C 0.334 3.666 10 F -0.199 7.199 11 F -0.203 7.203 12 C 0.150 3.850 13 C -0.394 4.394 14 H 0.121 0.879 15 C 0.092 3.908 16 N -0.738 5.738 17 Si 0.879 3.121 18 H -0.240 1.240 19 H -0.270 1.270 20 H -0.239 1.239 21 H 0.152 0.848 22 H 0.106 0.894 23 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 -1.593 2.660 7.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.026 4.026 3 C -0.220 4.220 4 C 0.055 3.945 5 N -0.290 5.290 6 C 0.094 3.906 7 Cl -0.037 7.037 8 C -0.300 4.300 9 C 0.280 3.720 10 F -0.180 7.180 11 F -0.185 7.185 12 C 0.141 3.859 13 C -0.421 4.421 14 H 0.139 0.861 15 C -0.137 4.137 16 N -0.357 5.357 17 Si 0.699 3.301 18 H -0.164 1.164 19 H -0.195 1.195 20 H -0.162 1.162 21 H 0.169 0.831 22 H 0.123 0.877 23 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.874 -1.632 3.229 6.899 hybrid contribution -0.118 -0.560 -0.711 0.913 sum 5.756 -2.192 2.518 6.654 Atomic orbital electron populations 1.81086 1.12195 1.12415 1.08187 1.25012 0.92255 0.92509 0.92814 1.18053 0.85152 1.23876 0.94871 1.22128 0.87825 0.88786 0.95757 1.66506 1.07533 1.26069 1.28850 1.20872 0.85096 0.95247 0.89424 1.98335 1.10546 1.96579 1.98197 1.20685 0.94762 1.21864 0.92660 1.19964 0.97946 0.71533 0.82575 1.92973 1.95636 1.55157 1.74223 1.92954 1.95504 1.47909 1.82100 1.18178 0.88715 0.87336 0.91670 1.19798 1.06922 1.16137 0.99260 0.86115 1.26318 0.92318 1.00977 0.94113 1.69574 1.05870 1.36215 1.24038 0.86814 0.82181 0.79854 0.81204 1.16376 1.19494 1.16188 0.83074 0.87700 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.67 17.38 41.84 0.73 -9.94 14 2 C 0.29 6.35 10.62 -22.47 -0.24 6.11 14 3 C -0.21 -4.46 4.91 -103.99 -0.51 -4.97 14 4 C 0.21 3.96 10.95 -17.16 -0.19 3.78 14 5 N -0.57 -11.12 10.23 -10.20 -0.10 -11.22 14 6 C 0.25 4.86 7.24 -17.61 -0.13 4.73 14 7 Cl -0.06 -1.03 27.07 -51.86 -1.40 -2.43 14 8 C -0.29 -6.02 5.44 -103.71 -0.56 -6.58 14 9 C 0.33 6.31 4.94 36.01 0.18 6.49 14 10 F -0.20 -4.03 16.68 2.25 0.04 -4.00 14 11 F -0.20 -4.06 15.96 2.25 0.04 -4.03 14 12 C 0.15 3.39 4.73 -104.30 -0.49 2.90 14 13 C -0.39 -9.51 7.90 -37.78 -0.30 -9.81 14 14 H 0.12 3.07 6.92 -52.49 -0.36 2.71 14 15 C 0.09 2.21 4.55 -17.30 -0.08 2.13 14 16 N -0.74 -17.92 13.92 55.57 0.77 -17.15 14 17 Si 0.88 19.07 24.88 -169.99 -4.23 14.85 14 18 H -0.24 -5.28 5.31 56.52 0.30 -4.98 14 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 14 20 H -0.24 -5.21 7.11 56.52 0.40 -4.81 14 21 H 0.15 2.30 8.06 -52.49 -0.42 1.88 14 22 H 0.11 1.65 6.13 -51.93 -0.32 1.33 14 23 H 0.30 6.64 8.29 -40.82 -0.34 6.30 14 LS Contribution 236.31 15.07 3.56 3.56 Total: -1.00 -25.10 236.31 -3.26 -28.36 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: -0.34 Total: -2.77 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -2.32 Total: 4.77 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 1.40 Total: -38.31 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.07 Total: -8.02 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.23 Total: 14.85 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.40 Total: -2.43 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -25.10 -3.26 -28.36 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238569027.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.491 kcal (2) G-P(sol) polarization free energy of solvation -25.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds