Wall clock time and date at job start Mon Mar 30 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40395 * 120.35231 * 148.37648 * 3 2 1 5 5 C 1.36908 * 118.56109 * 180.02562 * 4 3 2 6 6 Cl 1.73601 * 120.38347 * 180.02562 * 5 4 3 7 7 C 1.40995 * 119.22731 * 359.97438 * 5 4 3 8 8 C 1.40947 * 119.66913 * 180.02562 * 7 5 4 9 9 H 1.08001 * 119.99708 * 0.02562 * 8 7 5 10 10 C 1.40255 * 120.00085 * 180.02562 * 8 7 5 11 11 N 1.30616 * 120.00355 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00088 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47231 * 59.99483 * 12 10 8 14 14 H 1.48504 * 109.47461 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47000 * 299.99567 * 12 10 8 16 16 N 1.33804 * 120.66123 * 0.02562 * 7 5 4 17 17 C 1.31118 * 121.55405 * 0.02562 * 16 7 5 18 18 C 1.50702 * 119.64651 * 180.02562 * 17 16 7 19 19 F 1.39901 * 109.47108 * 29.97178 * 18 17 16 20 20 F 1.39898 * 109.47414 * 149.97493 * 18 17 16 21 21 H 1.07995 * 120.72169 * 359.74745 * 4 3 2 22 22 H 0.96997 * 120.00509 * 179.97438 * 11 10 8 23 23 H 1.09001 * 109.46923 * 269.97915 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2770 1.0326 -0.6352 5 6 4.6454 0.9965 -0.6133 6 17 5.5693 2.2484 -1.3832 7 6 5.2955 -0.0688 0.0429 8 6 6.7040 -0.1149 0.0717 9 1 7.2796 0.6635 -0.4070 10 6 7.3579 -1.1717 0.7220 11 7 6.6617 -2.1128 1.3013 12 14 9.2245 -1.2324 0.7607 13 1 9.7454 -0.0175 1.4374 14 1 9.6652 -2.4400 1.5043 15 1 9.7469 -1.2878 -0.6283 16 7 4.5888 -1.0363 0.6385 17 6 3.2777 -1.0304 0.6339 18 6 2.5248 -2.1418 1.3188 19 9 3.2812 -2.6253 2.3917 20 9 1.3022 -1.6540 1.7925 21 1 2.7543 1.8351 -1.1343 22 1 7.1139 -2.8438 1.7507 23 1 2.3436 -2.9490 0.6091 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238579971.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:15 Heat of formation + Delta-G solvation = -52.232629 kcal Electronic energy + Delta-G solvation = -16439.937099 eV Core-core repulsion = 13142.746465 eV Total energy + Delta-G solvation = -3297.190634 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.34518 -46.33137 -38.93194 -35.78683 -35.44578 -34.22212 -31.42773 -31.02880 -27.16547 -25.78054 -22.65836 -21.34668 -18.20511 -18.07923 -16.98366 -16.84622 -16.25392 -15.36699 -14.92212 -14.14503 -13.51670 -13.26636 -13.18990 -12.85996 -12.78626 -12.36213 -12.20275 -11.96452 -11.60919 -11.55249 -11.53436 -11.33155 -10.96743 -10.70264 -10.61674 -9.87647 -9.78414 -8.69821 -8.34931 -8.06393 -7.04437 -5.15562 1.70705 2.27576 2.82740 2.83270 2.85813 3.11845 3.56228 3.66015 3.79646 4.23355 4.37346 4.71855 5.03643 5.08164 5.21157 5.57853 5.76447 6.13357 6.33141 6.58586 6.67301 6.84105 7.15549 7.61836 7.86982 8.16075 8.46133 9.26044 9.64849 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.009453 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.345781 B = 2961.433108 C = 4332.621387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.289 3.711 3 C -0.233 4.233 4 C 0.008 3.992 5 C -0.171 4.171 6 Cl -0.096 7.096 7 C 0.248 3.752 8 C -0.354 4.354 9 H 0.108 0.892 10 C 0.052 3.948 11 N -0.670 5.670 12 Si 0.920 3.080 13 H -0.258 1.258 14 H -0.271 1.271 15 H -0.258 1.258 16 N -0.442 5.442 17 C 0.146 3.854 18 C 0.323 3.677 19 F -0.184 7.184 20 F -0.200 7.200 21 H 0.121 0.879 22 H 0.289 0.711 23 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 -0.189 -1.466 3.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.023 4.023 3 C -0.245 4.245 4 C -0.017 4.017 5 C -0.203 4.203 6 Cl -0.067 7.067 7 C 0.127 3.873 8 C -0.382 4.382 9 H 0.125 0.875 10 C -0.179 4.179 11 N -0.287 5.287 12 Si 0.742 3.258 13 H -0.182 1.182 14 H -0.195 1.195 15 H -0.182 1.182 16 N -0.154 5.154 17 C -0.012 4.012 18 C 0.268 3.732 19 F -0.165 7.165 20 F -0.181 7.181 21 H 0.139 0.861 22 H 0.101 0.899 23 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.731 -0.938 -0.963 2.191 hybrid contribution 0.765 0.752 -0.311 1.117 sum 2.495 -0.186 -1.274 2.808 Atomic orbital electron populations 1.81065 1.12240 1.09910 1.13174 1.25509 0.92381 0.92710 0.91685 1.15729 0.84384 1.03890 1.20481 1.20377 0.91851 0.95359 0.94144 1.21232 0.91153 0.96417 1.11479 1.98238 1.74922 1.52883 1.80705 1.18327 0.93885 0.86180 0.88904 1.20239 0.90199 1.05213 1.22500 0.87453 1.26388 1.02318 0.94898 0.94303 1.70003 1.38577 1.05162 1.14970 0.86121 0.79986 0.79469 0.80202 1.18169 1.19547 1.18170 1.68600 1.02664 1.24654 1.19460 1.21574 0.92630 0.92524 0.94463 1.20071 0.75284 0.93162 0.84648 1.93019 1.76276 1.88688 1.58488 1.92986 1.45352 1.89701 1.90053 0.86107 0.89908 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.43 18.38 41.84 0.77 -9.66 14 2 C 0.29 5.98 12.57 -22.47 -0.28 5.70 14 3 C -0.23 -4.84 5.75 -106.38 -0.61 -5.45 14 4 C 0.01 0.16 9.62 -39.25 -0.38 -0.22 14 5 C -0.17 -3.59 6.35 -39.02 -0.25 -3.84 14 6 Cl -0.10 -1.76 27.37 -51.86 -1.42 -3.18 14 7 C 0.25 5.72 6.55 -84.94 -0.56 5.16 14 8 C -0.35 -7.85 8.82 -37.80 -0.33 -8.19 14 9 H 0.11 2.22 6.62 -52.49 -0.35 1.88 14 10 C 0.05 1.10 5.50 -17.31 -0.10 1.01 14 11 N -0.67 -14.93 11.44 55.56 0.64 -14.30 14 12 Si 0.92 15.54 29.56 -169.99 -5.03 10.51 14 13 H -0.26 -4.34 7.11 56.52 0.40 -3.94 14 14 H -0.27 -4.48 7.11 56.52 0.40 -4.08 14 15 H -0.26 -4.30 7.11 56.52 0.40 -3.90 14 16 N -0.44 -10.41 7.43 -7.04 -0.05 -10.46 14 17 C 0.15 3.14 6.62 -82.12 -0.54 2.60 14 18 C 0.32 6.20 5.53 36.01 0.20 6.40 14 19 F -0.18 -3.80 17.06 2.25 0.04 -3.77 14 20 F -0.20 -3.99 14.51 2.25 0.03 -3.96 14 21 H 0.12 2.12 8.06 -52.49 -0.42 1.69 14 22 H 0.29 5.80 8.29 -40.82 -0.34 5.46 14 23 H 0.12 1.84 8.14 -51.93 -0.42 1.42 14 LS Contribution 245.51 15.07 3.70 3.70 Total: -1.00 -24.89 245.51 -4.50 -29.39 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -0.33 Total: -1.47 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.85 Total: 3.18 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 1.35 Total: -34.41 kcal Atomic # 9 Polarization: -7.79 SS G_CDS: 0.07 Total: -7.72 kcal Atomic # 14 Polarization: 15.54 SS G_CDS: -5.03 Total: 10.51 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.42 Total: -3.18 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -24.89 -4.50 -29.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238579971.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.842 kcal (2) G-P(sol) polarization free energy of solvation -24.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds