Wall clock time and date at job start Mon Mar 30 2020 06:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39455 * 120.44591 * 184.62886 * 3 2 1 5 5 C 1.40856 * 118.07860 * 179.97438 * 4 3 2 6 6 C 1.41421 * 120.57350 * 180.02562 * 5 4 3 7 7 H 1.07999 * 120.00021 * 155.11051 * 6 5 4 8 8 C 1.39919 * 120.00380 * 335.10449 * 6 5 4 9 9 N 1.30850 * 119.99698 * 343.64252 * 8 6 5 10 10 Si 1.86790 * 120.00272 * 163.64023 * 8 6 5 11 11 H 1.48508 * 109.47349 * 90.00098 * 10 8 6 12 12 H 1.48496 * 109.47322 * 210.00005 * 10 8 6 13 13 H 1.48496 * 109.47221 * 330.00069 * 10 8 6 14 14 C 1.40824 * 118.84729 * 359.97438 * 5 4 3 15 15 C 1.50708 * 119.61853 * 179.97438 * 14 5 4 16 16 F 1.39892 * 109.47140 * 299.99548 * 15 14 5 17 17 F 1.39895 * 109.47278 * 60.00147 * 15 14 5 18 18 N 1.31497 * 120.75807 * 359.97438 * 14 5 4 19 19 C 1.32024 * 122.13823 * 359.97438 * 18 14 5 20 20 Cl 1.73603 * 119.46339 * 179.97438 * 19 18 14 21 21 H 1.08011 * 120.95935 * 0.24757 * 4 3 2 22 22 H 0.96993 * 119.99835 * 180.02562 * 9 8 6 23 23 H 1.09009 * 109.46677 * 179.97438 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2742 1.1993 0.0970 5 6 4.6815 1.1419 0.0929 6 6 5.4500 2.3252 0.1892 7 1 6.4556 2.2856 0.5813 8 6 4.9078 3.5472 -0.2235 9 7 3.8415 3.5670 -0.9817 10 14 5.7059 5.1502 0.3078 11 1 6.7283 5.5496 -0.6925 12 1 4.6702 6.2098 0.4069 13 1 6.3537 4.9659 1.6312 14 6 5.3100 -0.1143 -0.0078 15 6 6.8149 -0.1959 -0.0144 16 9 7.3162 0.5263 -1.1025 17 9 7.3164 0.3440 1.1747 18 7 4.5989 -1.2169 -0.0960 19 6 3.2788 -1.2032 -0.0943 20 17 2.4091 -2.7009 -0.2149 21 1 2.7568 2.1440 0.1775 22 1 3.4658 4.4141 -1.2681 23 1 7.1218 -1.2386 -0.0975 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238585143.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:27 Heat of formation + Delta-G solvation = -75.542820 kcal Electronic energy + Delta-G solvation = -16411.908147 eV Core-core repulsion = 13113.706707 eV Total energy + Delta-G solvation = -3298.201440 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.68886 -47.65871 -40.72997 -37.71280 -37.37175 -36.21627 -33.42786 -32.58505 -28.69095 -27.10204 -24.06117 -23.69044 -20.48982 -18.80705 -18.45661 -18.38745 -17.93574 -17.09623 -16.74121 -15.58340 -15.51955 -15.09308 -14.63075 -14.30870 -14.13404 -14.09542 -14.06739 -13.82353 -13.61583 -13.32083 -12.95603 -12.81592 -12.42201 -12.16814 -12.04541 -11.70670 -11.32194 -10.60950 -10.48276 -9.79757 -8.99875 -6.72826 -0.29062 0.56445 1.08696 1.39865 1.44020 1.56713 1.58242 1.89709 2.13019 2.51683 2.76212 3.07399 3.20683 3.49268 3.93562 4.21280 4.41435 4.51926 4.72146 4.91584 4.98023 5.28535 5.45467 6.04644 6.28329 6.36314 6.42549 7.04053 7.93707 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.019867 B = 0.009177 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.004654 B = 3050.279913 C = 4221.270357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.286 3.714 3 C -0.033 4.033 4 C -0.070 4.070 5 C 0.059 3.941 6 C -0.416 4.416 7 H 0.105 0.895 8 C 0.038 3.962 9 N -0.786 5.786 10 Si 0.986 3.014 11 H -0.258 1.258 12 H -0.261 1.261 13 H -0.252 1.252 14 C -0.075 4.075 15 C 0.350 3.650 16 F -0.205 7.205 17 F -0.206 7.206 18 N -0.419 5.419 19 C 0.061 3.939 20 Cl -0.054 7.054 21 H 0.144 0.856 22 H 0.306 0.694 23 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -0.096 1.510 4.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.029 4.029 3 C -0.040 4.040 4 C -0.098 4.098 5 C 0.054 3.946 6 C -0.442 4.442 7 H 0.123 0.877 8 C -0.183 4.183 9 N -0.408 5.408 10 Si 0.805 3.195 11 H -0.183 1.183 12 H -0.185 1.185 13 H -0.175 1.175 14 C -0.218 4.218 15 C 0.295 3.705 16 F -0.186 7.186 17 F -0.187 7.187 18 N -0.128 5.128 19 C -0.109 4.109 20 Cl -0.026 7.026 21 H 0.162 0.838 22 H 0.118 0.882 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.839 -0.837 1.289 3.229 hybrid contribution -0.013 1.241 0.012 1.241 sum 2.826 0.403 1.301 3.137 Atomic orbital electron populations 1.81078 1.12067 1.08865 1.10183 1.25502 0.92405 0.92310 0.92668 1.16451 0.84500 0.94283 1.08764 1.21902 0.93987 0.95498 0.98432 1.18352 0.92289 0.93834 0.90171 1.20261 1.01726 0.90951 1.31240 0.87735 1.26970 0.94664 1.05014 0.91672 1.69726 1.18061 1.32270 1.20706 0.85080 0.79110 0.74860 0.80423 1.18280 1.18511 1.17500 1.21393 0.95147 0.88804 1.16422 1.19754 0.86235 0.93659 0.70804 1.92955 1.88238 1.81791 1.55631 1.92927 1.88392 1.88943 1.48433 1.65742 1.06124 1.31824 1.09083 1.20380 0.88484 0.85045 1.16960 1.98295 1.73609 1.33493 1.97174 0.83814 0.88223 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -18.33 18.54 19.00 0.35 -17.98 14 2 C 0.29 11.69 14.38 88.33 1.27 12.96 14 3 C -0.03 -1.40 5.74 -21.28 -0.12 -1.52 14 4 C -0.07 -3.10 8.51 23.20 0.20 -2.90 14 5 C 0.06 2.67 5.56 -21.22 -0.12 2.56 14 6 C -0.42 -18.21 7.83 23.46 0.18 -18.03 14 7 H 0.10 4.49 6.02 -2.91 -0.02 4.47 14 8 C 0.04 1.56 5.19 85.25 0.44 2.00 14 9 N -0.79 -33.27 10.94 21.82 0.24 -33.03 14 10 Si 0.99 31.12 29.59 68.60 2.03 33.15 14 11 H -0.26 -8.04 7.11 99.48 0.71 -7.33 14 12 H -0.26 -7.81 7.11 99.48 0.71 -7.11 14 13 H -0.25 -7.88 7.11 99.48 0.71 -7.17 14 14 C -0.08 -3.20 6.34 43.24 0.27 -2.93 14 15 C 0.35 12.76 5.05 71.24 0.36 13.12 14 16 F -0.20 -7.95 16.48 44.97 0.74 -7.21 14 17 F -0.21 -7.61 15.68 44.97 0.71 -6.90 14 18 N -0.42 -17.70 10.18 -171.70 -1.75 -19.45 14 19 C 0.06 2.55 7.32 85.12 0.62 3.17 14 20 Cl -0.05 -1.96 28.15 -2.72 -0.08 -2.04 14 21 H 0.14 6.40 6.25 -2.91 -0.02 6.38 14 22 H 0.31 11.54 8.30 -92.71 -0.77 10.77 14 23 H 0.14 4.22 8.11 -2.38 -0.02 4.20 14 Total: -1.00 -47.45 245.48 6.65 -40.80 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.30 Total: 4.21 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 3.11 Total: 8.44 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -1.16 Total: -70.45 kcal Atomic # 9 Polarization: -15.56 SS G_CDS: 1.45 Total: -14.11 kcal Atomic # 14 Polarization: 31.12 SS G_CDS: 2.03 Total: 33.15 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -47.45 6.65 -40.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585143.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.742 kcal (2) G-P(sol) polarization free energy of solvation -47.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds