Wall clock time and date at job start Mon Mar 30 2020 06:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39935 * 120.65155 * 226.41365 * 3 2 1 5 5 C 1.38315 * 118.46118 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.13747 * 180.02562 * 5 4 3 7 7 F 1.39902 * 109.46979 * 209.97543 * 6 5 4 8 8 F 1.39894 * 109.47270 * 329.97196 * 6 5 4 9 9 C 1.39270 * 119.72050 * 359.97438 * 5 4 3 10 10 Cl 1.73602 * 119.32572 * 179.97438 * 9 5 4 11 11 N 1.31390 * 121.34503 * 0.26139 * 9 5 4 12 12 C 1.33643 * 121.65273 * 359.47385 * 11 9 5 13 13 C 1.40848 * 119.93631 * 180.26552 * 12 11 9 14 14 H 1.07999 * 120.00165 * 173.83979 * 13 12 11 15 15 C 1.40284 * 120.00189 * 353.83850 * 13 12 11 16 16 N 1.30608 * 119.99872 * 6.30220 * 15 13 12 17 17 Si 1.86803 * 120.00134 * 186.29839 * 15 13 12 18 18 H 1.48501 * 109.46809 * 94.98743 * 17 15 13 19 19 H 1.48497 * 109.47082 * 214.98956 * 17 15 13 20 20 H 1.48499 * 109.47289 * 334.99074 * 17 15 13 21 21 H 1.08004 * 120.77066 * 0.02562 * 4 3 2 22 22 H 1.08997 * 109.47194 * 89.97858 * 6 5 4 23 23 H 0.96997 * 119.99714 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2811 0.8309 0.8720 5 6 4.6632 0.7947 0.8341 6 6 5.4687 1.6726 1.7569 7 9 6.6837 2.0007 1.1457 8 9 4.7529 2.8432 2.0296 9 6 5.3073 -0.0572 -0.0597 10 17 7.0425 -0.0940 -0.0992 11 7 4.6285 -0.8297 -0.8776 12 6 3.2922 -0.8421 -0.8834 13 6 2.6010 -1.6886 -1.7719 14 1 1.5261 -1.7741 -1.7103 15 6 3.3087 -2.4208 -2.7368 16 7 4.6147 -2.4142 -2.7334 17 14 2.3831 -3.4054 -4.0265 18 1 2.2400 -2.5927 -5.2612 19 1 3.1361 -4.6474 -4.3358 20 1 1.0372 -3.7588 -3.5079 21 1 2.7641 1.4843 1.5593 22 1 5.6625 1.1399 2.6878 23 1 5.1040 -2.9208 -3.4003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238612701.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:04 Heat of formation + Delta-G solvation = -49.323104 kcal Electronic energy + Delta-G solvation = -16287.076644 eV Core-core repulsion = 12990.012176 eV Total energy + Delta-G solvation = -3297.064468 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.35730 -46.37846 -38.91929 -35.93551 -35.34696 -34.33278 -31.74716 -30.86676 -27.61292 -24.38229 -23.31122 -21.68963 -18.24704 -17.92917 -16.91777 -16.78317 -16.04495 -15.69841 -14.96723 -14.52150 -13.56387 -13.23324 -13.03872 -12.90338 -12.74104 -12.51133 -12.35014 -12.05273 -11.86696 -11.66105 -11.41694 -11.15943 -10.74469 -10.62831 -10.49130 -10.00935 -9.78161 -8.82759 -8.37233 -8.06296 -7.06827 -5.25891 1.73947 2.17464 2.74012 2.82275 2.84943 2.88446 3.56186 3.63367 3.87833 4.24189 4.42578 4.83955 5.07617 5.18732 5.45555 5.57362 5.63022 6.00424 6.22357 6.55227 6.73468 6.81601 7.14177 7.54973 7.86241 8.14670 8.49967 9.22439 9.62920 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.022380 B = 0.008488 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.844700 B = 3298.068851 C = 4488.973248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.301 3.699 3 C -0.221 4.221 4 C 0.054 3.946 5 C -0.366 4.366 6 C 0.336 3.664 7 F -0.201 7.201 8 F -0.213 7.213 9 C 0.273 3.727 10 Cl -0.059 7.059 11 N -0.466 5.466 12 C 0.284 3.716 13 C -0.366 4.366 14 H 0.099 0.901 15 C 0.057 3.943 16 N -0.673 5.673 17 Si 0.919 3.081 18 H -0.262 1.262 19 H -0.268 1.268 20 H -0.255 1.255 21 H 0.125 0.875 22 H 0.104 0.896 23 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.027 1.218 3.086 5.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.010 4.010 3 C -0.230 4.230 4 C 0.027 3.973 5 C -0.374 4.374 6 C 0.282 3.718 7 F -0.182 7.182 8 F -0.195 7.195 9 C 0.090 3.910 10 Cl -0.031 7.031 11 N -0.178 5.178 12 C 0.163 3.837 13 C -0.394 4.394 14 H 0.117 0.883 15 C -0.174 4.174 16 N -0.290 5.290 17 Si 0.741 3.259 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.178 1.178 21 H 0.143 0.857 22 H 0.121 0.879 23 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.985 0.549 2.317 3.818 hybrid contribution -0.012 0.223 -0.073 0.235 sum 2.973 0.772 2.244 3.804 Atomic orbital electron populations 1.81074 1.12329 1.11947 1.11645 1.25398 0.92272 0.91660 0.91684 1.16603 0.84735 1.11406 1.10236 1.20572 0.91531 0.92208 0.92952 1.19923 0.94217 1.11838 1.11430 1.19907 0.76320 0.80689 0.94930 1.93014 1.46023 1.93628 1.85535 1.92923 1.79073 1.52645 1.94811 1.21430 0.86291 0.91737 0.91543 1.98345 1.09679 1.97450 1.97580 1.68087 1.07206 1.21354 1.21156 1.18140 0.86055 0.89899 0.89654 1.20079 0.95691 1.15386 1.08238 0.88287 1.26337 0.95201 0.96761 0.99141 1.69998 1.07397 1.24615 1.26956 0.86068 0.80682 0.79157 0.80008 1.18632 1.19228 1.17824 0.85700 0.87916 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.95 18.54 41.84 0.78 -10.17 14 2 C 0.30 6.53 13.94 -22.47 -0.31 6.22 14 3 C -0.22 -4.78 5.81 -105.92 -0.62 -5.40 14 4 C 0.05 1.04 9.23 -38.92 -0.36 0.68 14 5 C -0.37 -7.09 5.77 -104.21 -0.60 -7.70 14 6 C 0.34 5.49 5.47 36.00 0.20 5.69 14 7 F -0.20 -3.51 14.17 2.25 0.03 -3.47 14 8 F -0.21 -3.54 16.52 2.25 0.04 -3.51 14 9 C 0.27 5.86 7.23 -17.36 -0.13 5.73 14 10 Cl -0.06 -1.13 25.93 -51.86 -1.34 -2.47 14 11 N -0.47 -11.15 7.85 -7.99 -0.06 -11.21 14 12 C 0.28 6.74 6.57 -84.67 -0.56 6.18 14 13 C -0.37 -8.55 8.76 -37.83 -0.33 -8.88 14 14 H 0.10 2.26 6.91 -52.49 -0.36 1.90 14 15 C 0.06 1.25 5.49 -17.30 -0.10 1.16 14 16 N -0.67 -15.33 11.49 55.56 0.64 -14.69 14 17 Si 0.92 16.34 29.57 -169.99 -5.03 11.32 14 18 H -0.26 -4.65 7.11 56.52 0.40 -4.24 14 19 H -0.27 -4.60 7.11 56.52 0.40 -4.20 14 20 H -0.25 -4.58 7.11 56.52 0.40 -4.18 14 21 H 0.13 2.09 7.66 -52.48 -0.40 1.69 14 22 H 0.10 1.35 8.14 -51.93 -0.42 0.93 14 23 H 0.29 5.87 8.29 -40.82 -0.34 5.53 14 LS Contribution 244.66 15.07 3.69 3.69 Total: -1.00 -25.02 244.66 -4.38 -29.40 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -0.32 Total: -2.57 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.80 Total: 3.69 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 1.35 Total: -36.07 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.07 Total: -6.98 kcal Atomic # 14 Polarization: 16.34 SS G_CDS: -5.03 Total: 11.32 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.34 Total: -2.47 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -25.02 -4.38 -29.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612701.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.923 kcal (2) G-P(sol) polarization free energy of solvation -25.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds