Wall clock time and date at job start Mon Mar 30 2020 06:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39935 * 120.65155 * 226.41365 * 3 2 1 5 5 C 1.38315 * 118.46118 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.13747 * 180.02562 * 5 4 3 7 7 F 1.39902 * 109.46979 * 209.97543 * 6 5 4 8 8 F 1.39894 * 109.47270 * 329.97196 * 6 5 4 9 9 C 1.39270 * 119.72050 * 359.97438 * 5 4 3 10 10 Cl 1.73602 * 119.32572 * 179.97438 * 9 5 4 11 11 N 1.31390 * 121.34503 * 0.26139 * 9 5 4 12 12 C 1.33643 * 121.65273 * 359.47385 * 11 9 5 13 13 C 1.40848 * 119.93631 * 180.26552 * 12 11 9 14 14 H 1.07999 * 120.00165 * 173.83979 * 13 12 11 15 15 C 1.40284 * 120.00189 * 353.83850 * 13 12 11 16 16 N 1.30608 * 119.99872 * 6.30220 * 15 13 12 17 17 Si 1.86803 * 120.00134 * 186.29839 * 15 13 12 18 18 H 1.48501 * 109.46809 * 94.98743 * 17 15 13 19 19 H 1.48497 * 109.47082 * 214.98956 * 17 15 13 20 20 H 1.48499 * 109.47289 * 334.99074 * 17 15 13 21 21 H 1.08004 * 120.77066 * 0.02562 * 4 3 2 22 22 H 1.08997 * 109.47194 * 89.97858 * 6 5 4 23 23 H 0.96997 * 119.99714 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2811 0.8309 0.8720 5 6 4.6632 0.7947 0.8341 6 6 5.4687 1.6726 1.7569 7 9 6.6837 2.0007 1.1457 8 9 4.7529 2.8432 2.0296 9 6 5.3073 -0.0572 -0.0597 10 17 7.0425 -0.0940 -0.0992 11 7 4.6285 -0.8297 -0.8776 12 6 3.2922 -0.8421 -0.8834 13 6 2.6010 -1.6886 -1.7719 14 1 1.5261 -1.7741 -1.7103 15 6 3.3087 -2.4208 -2.7368 16 7 4.6147 -2.4142 -2.7334 17 14 2.3831 -3.4054 -4.0265 18 1 2.2400 -2.5927 -5.2612 19 1 3.1361 -4.6474 -4.3358 20 1 1.0372 -3.7588 -3.5079 21 1 2.7641 1.4843 1.5593 22 1 5.6625 1.1399 2.6878 23 1 5.1040 -2.9208 -3.4003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238612701.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:04 Heat of formation + Delta-G solvation = -61.965494 kcal Electronic energy + Delta-G solvation = -16287.624859 eV Core-core repulsion = 12990.012176 eV Total energy + Delta-G solvation = -3297.612683 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.68505 -47.71060 -40.58032 -37.57403 -37.03305 -35.96152 -33.37256 -32.53366 -29.21235 -25.88360 -24.96365 -23.30015 -19.89903 -19.51019 -18.35123 -18.14311 -17.58472 -17.20247 -16.56270 -16.03694 -15.23541 -14.63117 -14.57547 -14.27669 -14.27107 -14.10561 -14.01426 -13.71708 -13.36585 -13.17495 -13.02156 -12.75494 -12.28273 -12.06423 -11.97886 -11.56262 -11.34001 -10.46792 -10.03264 -9.72689 -8.68869 -6.97655 0.05851 0.58528 1.11787 1.36570 1.43152 1.51096 1.91368 2.09663 2.19706 2.57935 3.08870 3.33284 3.49328 3.61892 4.00473 4.08943 4.29651 4.36630 4.61536 4.92878 5.14988 5.18582 5.54628 5.82320 6.18339 6.45331 6.78540 7.54133 8.04627 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.022380 B = 0.008488 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.844700 B = 3298.068851 C = 4488.973248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.310 3.690 3 C -0.236 4.236 4 C 0.062 3.938 5 C -0.360 4.360 6 C 0.338 3.662 7 F -0.207 7.207 8 F -0.212 7.212 9 C 0.257 3.743 10 Cl -0.043 7.043 11 N -0.495 5.495 12 C 0.265 3.735 13 C -0.397 4.397 14 H 0.094 0.906 15 C 0.025 3.975 16 N -0.705 5.705 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.255 1.255 20 H -0.259 1.259 21 H 0.155 0.845 22 H 0.147 0.853 23 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 1.498 3.615 5.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.001 4.001 3 C -0.245 4.245 4 C 0.036 3.964 5 C -0.367 4.367 6 C 0.284 3.716 7 F -0.188 7.188 8 F -0.193 7.193 9 C 0.076 3.924 10 Cl -0.014 7.014 11 N -0.208 5.208 12 C 0.143 3.857 13 C -0.425 4.425 14 H 0.112 0.888 15 C -0.203 4.203 16 N -0.323 5.323 17 Si 0.804 3.196 18 H -0.184 1.184 19 H -0.179 1.179 20 H -0.183 1.183 21 H 0.172 0.828 22 H 0.164 0.836 23 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.273 0.848 2.868 4.434 hybrid contribution -0.008 0.219 -0.155 0.268 sum 3.265 1.067 2.713 4.377 Atomic orbital electron populations 1.81067 1.12615 1.12569 1.12253 1.25403 0.92223 0.91210 0.91235 1.16691 0.84679 1.12147 1.10965 1.20877 0.91611 0.91521 0.92421 1.20298 0.94585 1.11105 1.10754 1.20164 0.75429 0.80435 0.95590 1.93004 1.46284 1.93659 1.85894 1.92929 1.79087 1.52631 1.94702 1.21815 0.87209 0.91817 0.91599 1.98342 1.08199 1.97386 1.97519 1.68048 1.07525 1.22744 1.22524 1.18440 0.86483 0.90481 0.90248 1.20263 0.95670 1.16872 1.09657 0.88788 1.27059 0.95793 0.97117 1.00343 1.70026 1.08606 1.25631 1.28078 0.85111 0.79132 0.78057 0.77293 1.18405 1.17911 1.18293 0.82769 0.83601 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.30 18.54 19.00 0.35 -21.95 14 2 C 0.31 13.33 13.94 88.33 1.23 14.56 14 3 C -0.24 -10.11 5.81 -20.70 -0.12 -10.23 14 4 C 0.06 2.28 9.23 22.70 0.21 2.49 14 5 C -0.36 -13.19 5.77 -19.60 -0.11 -13.31 14 6 C 0.34 9.96 5.47 71.24 0.39 10.35 14 7 F -0.21 -6.69 14.17 44.97 0.64 -6.05 14 8 F -0.21 -6.34 16.52 44.97 0.74 -5.60 14 9 C 0.26 10.80 7.23 85.01 0.61 11.41 14 10 Cl -0.04 -1.59 25.93 -2.72 -0.07 -1.66 14 11 N -0.50 -23.78 7.85 -179.19 -1.41 -25.19 14 12 C 0.27 12.70 6.57 40.43 0.27 12.97 14 13 C -0.40 -18.84 8.76 23.41 0.21 -18.64 14 14 H 0.09 4.39 6.91 -2.91 -0.02 4.37 14 15 C 0.03 1.12 5.49 85.37 0.47 1.59 14 16 N -0.71 -32.43 11.49 21.88 0.25 -32.18 14 17 Si 0.99 33.40 29.57 68.60 2.03 35.43 14 18 H -0.26 -8.64 7.11 99.48 0.71 -7.93 14 19 H -0.26 -8.06 7.11 99.48 0.71 -7.35 14 20 H -0.26 -8.86 7.11 99.48 0.71 -8.15 14 21 H 0.15 4.70 7.66 -2.91 -0.02 4.68 14 22 H 0.15 3.19 8.14 -2.39 -0.02 3.17 14 23 H 0.30 12.11 8.29 -92.71 -0.77 11.34 14 Total: -1.00 -52.85 244.66 6.98 -45.88 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: 1.29 Total: 0.13 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 3.15 Total: 11.20 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -0.80 Total: -79.32 kcal Atomic # 9 Polarization: -13.03 SS G_CDS: 1.38 Total: -11.65 kcal Atomic # 14 Polarization: 33.40 SS G_CDS: 2.03 Total: 35.43 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.07 Total: -1.66 kcal Total: -52.85 6.98 -45.88 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612701.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.090 kcal (2) G-P(sol) polarization free energy of solvation -52.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds