Wall clock time and date at job start Mon Mar 30 2020 06:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40209 * 120.85125 * 226.90501 * 3 2 1 5 5 C 1.38571 * 119.41686 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.39317 * 180.02562 * 5 4 3 7 7 F 1.39901 * 109.47572 * 210.01714 * 6 5 4 8 8 F 1.39902 * 109.47148 * 330.02316 * 6 5 4 9 9 N 1.31426 * 121.21816 * 0.03912 * 5 4 3 10 10 C 1.33592 * 121.87849 * 359.97438 * 9 5 4 11 11 C 1.41298 * 119.78912 * 180.02562 * 10 9 5 12 12 H 1.07997 * 120.00704 * 179.97438 * 11 10 9 13 13 C 1.40069 * 119.99616 * 359.97438 * 11 10 9 14 14 N 1.30728 * 120.00177 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00198 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46869 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47264 * 119.99451 * 15 13 11 18 18 H 1.48493 * 109.47342 * 240.00063 * 15 13 11 19 19 C 1.39664 * 120.85950 * 46.93056 * 3 2 1 20 20 Cl 1.73601 * 120.61464 * 0.27317 * 19 3 2 21 21 H 1.07998 * 120.29770 * 359.97438 * 4 3 2 22 22 H 1.09009 * 109.47175 * 90.01671 * 6 5 4 23 23 H 0.96996 * 120.00255 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2866 0.8233 0.8790 5 6 4.6719 0.7999 0.8540 6 6 5.4438 1.6839 1.7993 7 9 6.6636 2.0398 1.2141 8 9 4.7014 2.8386 2.0691 9 7 5.3251 0.0210 0.0209 10 6 4.6914 -0.7824 -0.8379 11 6 5.4378 -1.6021 -1.7139 12 1 4.9291 -2.2532 -2.4093 13 6 6.8378 -1.5701 -1.6804 14 7 7.4536 -0.7816 -0.8390 15 14 7.8248 -2.6542 -2.8380 16 1 6.8976 -3.4480 -3.6839 17 1 8.6802 -1.8037 -3.7040 18 1 8.6810 -3.5733 -2.0460 19 6 3.2848 -0.8178 -0.8758 20 17 2.4562 -1.8545 -1.9949 21 1 2.7652 1.4697 1.5694 22 1 5.6301 1.1463 2.7292 23 1 8.4231 -0.7592 -0.8161 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238613311.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:31 Heat of formation + Delta-G solvation = -63.881338 kcal Electronic energy + Delta-G solvation = -16277.174636 eV Core-core repulsion = 12979.478875 eV Total energy + Delta-G solvation = -3297.695760 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.74351 -47.74944 -40.57788 -37.76131 -37.22971 -35.76532 -33.16006 -32.56545 -28.56536 -26.90681 -25.02455 -22.96120 -20.63831 -18.82940 -18.24134 -17.78593 -17.49362 -16.99797 -16.61063 -16.48815 -15.34836 -15.01334 -14.60079 -14.22558 -14.19962 -14.13538 -14.04101 -13.66802 -13.32197 -13.04348 -12.93262 -12.89878 -12.60884 -12.12570 -11.98213 -11.46809 -11.31995 -10.31716 -9.92984 -9.70605 -8.49912 -6.69989 -0.07740 0.42657 1.42018 1.46469 1.48788 1.54161 1.61301 2.07983 2.21144 2.63819 2.72697 2.95912 3.38625 3.50038 3.89953 4.20744 4.30962 4.56812 4.60590 5.01934 5.09866 5.18777 5.51854 6.10815 6.31409 6.33272 6.66179 7.68576 8.25735 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.011080 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.412067 B = 2526.355365 C = 4345.433881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.285 3.715 3 C 0.043 3.957 4 C -0.241 4.241 5 C 0.080 3.920 6 C 0.333 3.667 7 F -0.201 7.201 8 F -0.202 7.202 9 N -0.458 5.458 10 C 0.231 3.769 11 C -0.413 4.413 12 H 0.106 0.894 13 C 0.026 3.974 14 N -0.721 5.721 15 Si 0.983 3.017 16 H -0.254 1.254 17 H -0.266 1.266 18 H -0.263 1.263 19 C -0.148 4.148 20 Cl -0.075 7.075 21 H 0.148 0.852 22 H 0.159 0.841 23 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 -0.007 2.384 2.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.030 4.030 3 C 0.033 3.967 4 C -0.267 4.267 5 C -0.069 4.069 6 C 0.278 3.722 7 F -0.182 7.182 8 F -0.183 7.183 9 N -0.171 5.171 10 C 0.107 3.893 11 C -0.442 4.442 12 H 0.124 0.876 13 C -0.200 4.200 14 N -0.340 5.340 15 Si 0.803 3.197 16 H -0.177 1.177 17 H -0.191 1.191 18 H -0.187 1.187 19 C -0.183 4.183 20 Cl -0.046 7.046 21 H 0.166 0.834 22 H 0.176 0.824 23 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.796 -0.017 2.321 2.454 hybrid contribution -0.196 -0.271 -0.599 0.686 sum 0.599 -0.288 1.723 1.847 Atomic orbital electron populations 1.81103 1.12091 1.09274 1.09197 1.25529 0.92384 0.92559 0.92547 1.15741 0.83754 0.98880 0.98336 1.21098 0.93392 1.06421 1.05745 1.21912 0.91338 0.96953 0.96696 1.20282 0.74987 0.80900 0.95991 1.92987 1.45535 1.92756 1.86958 1.92955 1.77594 1.53206 1.94591 1.68449 1.36886 1.06723 1.05080 1.18533 0.86370 0.92073 0.92290 1.20272 0.92085 1.17413 1.14420 0.87598 1.26958 0.99030 0.96692 0.97327 1.70123 1.11321 1.25996 1.26585 0.85110 0.78170 0.78268 0.78189 1.17705 1.19112 1.18743 1.21969 0.93256 1.02815 1.00309 1.98246 1.77804 1.66813 1.61785 0.83429 0.82433 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -17.08 18.54 19.00 0.35 -16.72 14 2 C 0.28 10.89 14.54 88.33 1.28 12.17 14 3 C 0.04 1.71 5.76 -21.21 -0.12 1.59 14 4 C -0.24 -9.00 9.19 22.83 0.21 -8.79 14 5 C 0.08 3.22 6.58 42.70 0.28 3.50 14 6 C 0.33 11.00 5.72 71.23 0.41 11.40 14 7 F -0.20 -7.83 17.05 44.97 0.77 -7.06 14 8 F -0.20 -6.37 16.44 44.97 0.74 -5.63 14 9 N -0.46 -21.53 7.42 -177.38 -1.32 -22.84 14 10 C 0.23 10.94 6.56 40.24 0.26 11.21 14 11 C -0.41 -19.18 8.83 23.47 0.21 -18.97 14 12 H 0.11 4.68 6.65 -2.91 -0.02 4.66 14 13 C 0.03 1.14 5.50 85.30 0.47 1.61 14 14 N -0.72 -33.31 11.46 21.84 0.25 -33.06 14 15 Si 0.98 33.21 29.56 68.60 2.03 35.24 14 16 H -0.25 -8.40 7.11 99.48 0.71 -7.69 14 17 H -0.27 -8.83 7.11 99.48 0.71 -8.12 14 18 H -0.26 -8.56 7.11 99.48 0.71 -7.85 14 19 C -0.15 -6.42 6.43 23.23 0.15 -6.27 14 20 Cl -0.07 -2.95 26.58 -2.72 -0.07 -3.02 14 21 H 0.15 4.70 7.58 -2.91 -0.02 4.68 14 22 H 0.16 3.92 8.14 -2.38 -0.02 3.90 14 23 H 0.29 12.04 8.29 -92.71 -0.77 11.27 14 Total: -1.00 -51.99 248.12 7.19 -44.80 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: 1.29 Total: 0.85 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 3.15 Total: 7.45 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -0.71 Total: -72.62 kcal Atomic # 9 Polarization: -14.20 SS G_CDS: 1.51 Total: -12.69 kcal Atomic # 14 Polarization: 33.21 SS G_CDS: 2.03 Total: 35.24 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.07 Total: -3.02 kcal Total: -51.99 7.19 -44.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238613311.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.083 kcal (2) G-P(sol) polarization free energy of solvation -51.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds