Wall clock time and date at job start Mon Mar 30 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39984 * 119.59891 * 333.59594 * 3 2 1 5 5 C 1.38670 * 119.47641 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.66457 * 179.97438 * 5 4 3 7 7 F 1.39902 * 109.46914 * 30.00405 * 6 5 4 8 8 F 1.39904 * 109.47187 * 149.99927 * 6 5 4 9 9 C 1.38414 * 118.67435 * 0.02562 * 5 4 3 10 10 Cl 1.73600 * 120.41920 * 180.02562 * 9 5 4 11 11 C 1.40984 * 119.16675 * 359.97438 * 9 5 4 12 12 C 1.41352 * 119.77235 * 180.28598 * 11 9 5 13 13 H 1.07998 * 120.00600 * 359.71925 * 12 11 9 14 14 C 1.40041 * 119.99651 * 179.72719 * 12 11 9 15 15 N 1.30742 * 120.00193 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99673 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47396 * 89.99987 * 16 14 12 18 18 H 1.48503 * 109.46876 * 209.99733 * 16 14 12 19 19 H 1.48498 * 109.47175 * 329.99371 * 16 14 12 20 20 N 1.32361 * 119.59291 * 153.57269 * 3 2 1 21 21 H 1.07994 * 120.26438 * 359.97438 * 4 3 2 22 22 H 1.08995 * 109.47175 * 270.00148 * 6 5 4 23 23 H 0.96996 * 119.99765 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2599 -1.0892 0.5413 5 6 4.6466 -1.0862 0.5395 6 6 5.4184 -2.2452 1.1157 7 9 4.6761 -3.4213 0.9641 8 9 6.6383 -2.3737 0.4428 9 6 5.3076 0.0031 -0.0012 10 17 7.0427 0.0539 -0.0275 11 6 4.5542 1.0703 -0.5312 12 6 5.2161 2.1863 -1.0920 13 1 6.2954 2.2216 -1.1093 14 6 4.4723 3.2465 -1.6250 15 7 3.1658 3.2037 -1.6043 16 14 5.3471 4.7216 -2.3654 17 1 5.5797 4.4841 -3.8126 18 1 4.5071 5.9338 -2.1914 19 1 6.6497 4.9197 -1.6805 20 7 3.2212 1.0316 -0.5122 21 1 2.7180 -1.9258 0.9570 22 1 5.6047 -2.0670 2.1747 23 1 2.6507 3.9379 -1.9738 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238617834.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:41 Heat of formation + Delta-G solvation = -40.881400 kcal Electronic energy + Delta-G solvation = -16293.791830 eV Core-core repulsion = 12997.093422 eV Total energy + Delta-G solvation = -3296.698408 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.54788 -46.55692 -38.95126 -35.98345 -35.38531 -34.18545 -32.03132 -30.56390 -26.59161 -25.77295 -23.37977 -21.55082 -18.62429 -17.51106 -17.06260 -16.83624 -15.93514 -15.35132 -14.93029 -14.76956 -13.71188 -13.51630 -13.33492 -13.01749 -12.66917 -12.61345 -12.30202 -12.07811 -11.86005 -11.49842 -11.45294 -11.15519 -10.85155 -10.75178 -10.52351 -9.75657 -9.73514 -8.74854 -8.31688 -8.00293 -6.89804 -5.00097 1.58867 2.14243 2.88125 2.92177 2.96379 3.13777 3.29768 3.58593 3.67960 4.13587 4.41144 4.43924 4.72544 5.15050 5.17359 5.40369 5.89135 6.13831 6.21888 6.64115 6.72660 6.81984 7.10557 7.78882 7.97098 8.10550 8.33261 9.29522 9.83912 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.018398 B = 0.009698 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.544822 B = 2886.632513 C = 4362.840907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.298 3.702 3 C 0.219 3.781 4 C -0.245 4.245 5 C -0.088 4.088 6 C 0.316 3.684 7 F -0.203 7.203 8 F -0.192 7.192 9 C -0.138 4.138 10 Cl -0.079 7.079 11 C 0.252 3.748 12 C -0.387 4.387 13 H 0.105 0.895 14 C 0.061 3.939 15 N -0.697 5.697 16 Si 0.917 3.083 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.255 1.255 20 N -0.430 5.430 21 H 0.122 0.878 22 H 0.116 0.884 23 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -2.979 3.020 6.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.019 4.019 3 C 0.070 3.930 4 C -0.272 4.272 5 C -0.096 4.096 6 C 0.262 3.738 7 F -0.185 7.185 8 F -0.173 7.173 9 C -0.171 4.171 10 Cl -0.051 7.051 11 C 0.128 3.872 12 C -0.416 4.416 13 H 0.123 0.877 14 C -0.168 4.168 15 N -0.316 5.316 16 Si 0.740 3.260 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.179 1.179 20 N -0.145 5.145 21 H 0.140 0.860 22 H 0.133 0.867 23 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.325 -2.126 2.562 4.705 hybrid contribution 1.300 -0.158 -0.063 1.311 sum 4.625 -2.284 2.500 5.732 Atomic orbital electron populations 1.81069 1.12102 1.09214 1.09209 1.25395 0.92151 0.91837 0.92500 1.16538 0.85570 0.92722 0.98146 1.20645 0.91832 1.01176 1.13575 1.19880 0.94106 0.94346 1.01243 1.20192 0.76210 0.80488 0.96869 1.92959 1.77499 1.50801 1.97212 1.93047 1.44882 1.96187 1.83204 1.21624 0.83853 0.99022 1.12624 1.98259 1.10965 1.98391 1.97453 1.18233 0.86279 0.91231 0.91450 1.19993 0.95622 0.98405 1.27603 0.87703 1.26225 0.94928 1.00348 0.95260 1.70056 1.06367 1.29410 1.25795 0.86125 0.80462 0.79255 0.80163 1.18872 1.19717 1.17900 1.68906 1.08000 1.21134 1.16430 0.85968 0.86656 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.42 18.54 41.84 0.78 -8.65 14 2 C 0.30 6.35 15.52 -22.47 -0.35 6.00 14 3 C 0.22 4.78 6.59 -85.06 -0.56 4.22 14 4 C -0.25 -4.79 9.17 -38.77 -0.36 -5.14 14 5 C -0.09 -1.71 5.75 -104.40 -0.60 -2.31 14 6 C 0.32 5.08 5.51 36.00 0.20 5.28 14 7 F -0.20 -3.32 16.56 2.25 0.04 -3.29 14 8 F -0.19 -3.31 14.33 2.25 0.03 -3.28 14 9 C -0.14 -2.93 6.35 -38.48 -0.24 -3.17 14 10 Cl -0.08 -1.51 24.42 -51.86 -1.27 -2.77 14 11 C 0.25 6.00 6.56 -84.97 -0.56 5.44 14 12 C -0.39 -8.99 8.83 -37.72 -0.33 -9.33 14 13 H 0.11 2.29 6.64 -52.49 -0.35 1.94 14 14 C 0.06 1.36 5.50 -17.34 -0.10 1.27 14 15 N -0.70 -16.60 11.46 55.55 0.64 -15.97 14 16 Si 0.92 16.60 29.56 -169.99 -5.02 11.57 14 17 H -0.26 -4.76 7.11 56.52 0.40 -4.36 14 18 H -0.27 -4.86 7.11 56.52 0.40 -4.46 14 19 H -0.26 -4.53 7.11 56.52 0.40 -4.13 14 20 N -0.43 -10.50 7.77 -9.03 -0.07 -10.57 14 21 H 0.12 2.11 7.68 -52.49 -0.40 1.71 14 22 H 0.12 1.46 8.14 -51.93 -0.42 1.03 14 23 H 0.28 6.13 8.29 -40.82 -0.34 5.80 14 LS Contribution 244.48 15.07 3.68 3.68 Total: -1.00 -25.08 244.48 -4.40 -29.48 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: -0.31 Total: -2.47 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.90 Total: 2.26 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 1.34 Total: -35.18 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.07 Total: -6.57 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.02 Total: 11.57 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -1.27 Total: -2.77 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -25.08 -4.40 -29.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238617834.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.402 kcal (2) G-P(sol) polarization free energy of solvation -25.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds