Wall clock time and date at job start Mon Mar 30 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39984 * 119.59891 * 333.59594 * 3 2 1 5 5 C 1.38670 * 119.47641 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.66457 * 179.97438 * 5 4 3 7 7 F 1.39902 * 109.46914 * 30.00405 * 6 5 4 8 8 F 1.39904 * 109.47187 * 149.99927 * 6 5 4 9 9 C 1.38414 * 118.67435 * 0.02562 * 5 4 3 10 10 Cl 1.73600 * 120.41920 * 180.02562 * 9 5 4 11 11 C 1.40984 * 119.16675 * 359.97438 * 9 5 4 12 12 C 1.41352 * 119.77235 * 180.28598 * 11 9 5 13 13 H 1.07998 * 120.00600 * 359.71925 * 12 11 9 14 14 C 1.40041 * 119.99651 * 179.72719 * 12 11 9 15 15 N 1.30742 * 120.00193 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99673 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47396 * 89.99987 * 16 14 12 18 18 H 1.48503 * 109.46876 * 209.99733 * 16 14 12 19 19 H 1.48498 * 109.47175 * 329.99371 * 16 14 12 20 20 N 1.32361 * 119.59291 * 153.57269 * 3 2 1 21 21 H 1.07994 * 120.26438 * 359.97438 * 4 3 2 22 22 H 1.08995 * 109.47175 * 270.00148 * 6 5 4 23 23 H 0.96996 * 119.99765 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2599 -1.0892 0.5413 5 6 4.6466 -1.0862 0.5395 6 6 5.4184 -2.2452 1.1157 7 9 4.6761 -3.4213 0.9641 8 9 6.6383 -2.3737 0.4428 9 6 5.3076 0.0031 -0.0012 10 17 7.0427 0.0539 -0.0275 11 6 4.5542 1.0703 -0.5312 12 6 5.2161 2.1863 -1.0920 13 1 6.2954 2.2216 -1.1093 14 6 4.4723 3.2465 -1.6250 15 7 3.1658 3.2037 -1.6043 16 14 5.3471 4.7216 -2.3654 17 1 5.5797 4.4841 -3.8126 18 1 4.5071 5.9338 -2.1914 19 1 6.6497 4.9197 -1.6805 20 7 3.2212 1.0316 -0.5122 21 1 2.7180 -1.9258 0.9570 22 1 5.6047 -2.0670 2.1747 23 1 2.6507 3.9379 -1.9738 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238617834.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:41 Heat of formation + Delta-G solvation = -53.592536 kcal Electronic energy + Delta-G solvation = -16294.343026 eV Core-core repulsion = 12997.093422 eV Total energy + Delta-G solvation = -3297.249604 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.84582 -47.85941 -40.61634 -37.66171 -36.99592 -35.82693 -33.63697 -32.24751 -28.24398 -27.24564 -25.01920 -23.15429 -20.16641 -19.21632 -18.32802 -18.22072 -17.45772 -16.88785 -16.54345 -16.33439 -15.40514 -15.01618 -14.69528 -14.40525 -14.25925 -14.12054 -13.94811 -13.67514 -13.37998 -13.06657 -12.94041 -12.77916 -12.38925 -12.20019 -11.96661 -11.34216 -11.31009 -10.37105 -9.98004 -9.67462 -8.53751 -6.72307 -0.08827 0.54103 1.43844 1.44191 1.50036 1.57967 1.61599 1.92194 2.18439 2.66716 2.75185 2.99215 3.34635 3.54826 3.78212 4.10144 4.33578 4.49342 4.61206 4.99199 5.08877 5.22108 5.50883 6.07904 6.28461 6.41069 6.63785 7.61850 8.22821 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.018398 B = 0.009698 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.544822 B = 2886.632513 C = 4362.840907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.303 3.697 3 C 0.201 3.799 4 C -0.227 4.227 5 C -0.091 4.091 6 C 0.320 3.680 7 F -0.203 7.203 8 F -0.199 7.199 9 C -0.146 4.146 10 Cl -0.061 7.061 11 C 0.230 3.770 12 C -0.417 4.417 13 H 0.111 0.889 14 C 0.026 3.974 15 N -0.740 5.740 16 Si 0.985 3.015 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.248 1.248 20 N -0.466 5.466 21 H 0.149 0.851 22 H 0.162 0.838 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.554 -3.591 3.616 8.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.013 4.013 3 C 0.054 3.946 4 C -0.253 4.253 5 C -0.099 4.099 6 C 0.267 3.733 7 F -0.184 7.184 8 F -0.180 7.180 9 C -0.179 4.179 10 Cl -0.032 7.032 11 C 0.105 3.895 12 C -0.447 4.447 13 H 0.129 0.871 14 C -0.199 4.199 15 N -0.360 5.360 16 Si 0.804 3.196 17 H -0.187 1.187 18 H -0.194 1.194 19 H -0.171 1.171 20 N -0.181 5.181 21 H 0.167 0.833 22 H 0.178 0.822 23 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.354 -2.768 3.173 6.057 hybrid contribution 0.984 -0.102 -0.194 1.008 sum 5.338 -2.870 2.979 6.753 Atomic orbital electron populations 1.81061 1.12184 1.09486 1.09554 1.25401 0.92096 0.91601 0.92248 1.16748 0.85717 0.93270 0.98842 1.20943 0.92170 1.00731 1.11480 1.20283 0.94286 0.95050 1.00246 1.20447 0.75280 0.79072 0.98536 1.92964 1.77533 1.50592 1.97320 1.93036 1.45172 1.96119 1.83655 1.21735 0.84989 0.99010 1.12200 1.98256 1.09246 1.98365 1.97369 1.18576 0.86531 0.92336 0.92022 1.20267 0.96068 0.99263 1.29076 0.87099 1.27037 0.95313 1.02574 0.94973 1.70142 1.07853 1.30550 1.27460 0.85130 0.79450 0.75797 0.79196 1.18653 1.19405 1.17124 1.68820 1.08769 1.22598 1.17937 0.83295 0.82153 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -18.95 18.54 19.00 0.35 -18.60 14 2 C 0.30 12.83 15.52 88.33 1.37 14.20 14 3 C 0.20 8.72 6.59 40.73 0.27 8.99 14 4 C -0.23 -8.41 9.17 22.80 0.21 -8.20 14 5 C -0.09 -3.32 5.75 -19.72 -0.11 -3.44 14 6 C 0.32 9.19 5.51 71.24 0.39 9.58 14 7 F -0.20 -5.93 16.56 44.97 0.74 -5.18 14 8 F -0.20 -6.28 14.33 44.97 0.64 -5.64 14 9 C -0.15 -6.05 6.35 22.99 0.15 -5.90 14 10 Cl -0.06 -2.22 24.42 -2.72 -0.07 -2.29 14 11 C 0.23 11.00 6.56 40.35 0.26 11.27 14 12 C -0.42 -19.53 8.83 23.47 0.21 -19.33 14 13 H 0.11 4.84 6.64 -2.91 -0.02 4.82 14 14 C 0.03 1.15 5.50 85.29 0.47 1.62 14 15 N -0.74 -36.06 11.46 21.84 0.25 -35.81 14 16 Si 0.98 33.94 29.56 68.60 2.03 35.96 14 17 H -0.26 -8.85 7.11 99.48 0.71 -8.14 14 18 H -0.27 -9.04 7.11 99.48 0.71 -8.33 14 19 H -0.25 -8.14 7.11 99.48 0.71 -7.44 14 20 N -0.47 -23.02 7.77 -182.47 -1.42 -24.44 14 21 H 0.15 4.68 7.68 -2.91 -0.02 4.66 14 22 H 0.16 3.30 8.14 -2.39 -0.02 3.28 14 23 H 0.29 12.74 8.29 -92.71 -0.77 11.97 14 Total: -1.00 -53.43 244.48 7.04 -46.39 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: 1.29 Total: 0.81 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 3.21 Total: 8.79 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -0.81 Total: -78.84 kcal Atomic # 9 Polarization: -12.21 SS G_CDS: 1.39 Total: -10.82 kcal Atomic # 14 Polarization: 33.94 SS G_CDS: 2.03 Total: 35.96 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.07 Total: -2.29 kcal Total: -53.43 7.04 -46.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238617834.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.200 kcal (2) G-P(sol) polarization free energy of solvation -53.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds