Wall clock time and date at job start Mon Mar 30 2020 06:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39900 * 120.45367 * 234.05860 * 3 2 1 5 5 N 1.31869 * 121.13661 * 179.97438 * 4 3 2 6 6 C 1.31562 * 122.20792 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.62099 * 180.02562 * 6 5 4 8 8 F 1.39903 * 109.47497 * 119.99913 * 7 6 5 9 9 F 1.39898 * 109.47217 * 239.99642 * 7 6 5 10 10 C 1.40733 * 120.75717 * 359.97332 * 6 5 4 11 11 C 1.41387 * 120.60699 * 180.02562 * 10 6 5 12 12 H 1.07999 * 120.00364 * 43.69311 * 11 10 6 13 13 C 1.39946 * 120.00071 * 223.69066 * 11 10 6 14 14 N 1.30826 * 119.99911 * 20.99155 * 13 11 10 15 15 Si 1.86800 * 119.99948 * 200.98897 * 13 11 10 16 16 H 1.48510 * 109.46861 * 60.00249 * 15 13 11 17 17 H 1.48500 * 109.46836 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47377 * 300.00267 * 15 13 11 19 19 C 1.39677 * 120.45602 * 54.01532 * 3 2 1 20 20 Cl 1.73599 * 120.98676 * 0.04242 * 19 3 2 21 21 H 1.08002 * 119.42922 * 359.97438 * 4 3 2 22 22 H 1.08997 * 109.47344 * 359.97438 * 7 6 5 23 23 H 0.97007 * 120.00040 * 182.19034 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2767 0.7088 0.9764 5 7 4.5953 0.7182 0.9894 6 6 5.3100 0.0701 0.0950 7 6 6.8146 0.1203 0.1653 8 9 7.3176 -1.1755 0.3239 9 9 7.3184 0.6746 -1.0162 10 6 4.6857 -0.6704 -0.9259 11 6 5.4569 -1.3662 -1.8852 12 1 6.3182 -1.9384 -1.5737 13 6 5.1041 -1.3135 -3.2384 14 7 4.3540 -0.3375 -3.6813 15 14 5.7043 -2.6369 -4.4123 16 1 5.2047 -3.9611 -3.9626 17 1 5.1966 -2.3536 -5.7788 18 1 7.1892 -2.6476 -4.4288 19 6 3.2763 -0.7065 -0.9743 20 17 2.4468 -1.6019 -2.2087 21 1 2.7345 1.2573 1.7325 22 1 7.1184 0.7346 1.0129 23 1 4.0831 -0.3181 -4.6126 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238621767.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:37 Heat of formation + Delta-G solvation = -56.120091 kcal Electronic energy + Delta-G solvation = -16688.320542 eV Core-core repulsion = 13390.961334 eV Total energy + Delta-G solvation = -3297.359207 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.08843 -46.06705 -39.08677 -36.08434 -35.64101 -34.19974 -31.63332 -30.99946 -27.02293 -25.38282 -22.44033 -22.00781 -18.71075 -17.14532 -16.82401 -16.67839 -16.34745 -15.38003 -15.16201 -13.93734 -13.78021 -13.46012 -13.03285 -12.91935 -12.62417 -12.46525 -12.36746 -12.21679 -11.89377 -11.71931 -11.46518 -11.13018 -11.07268 -10.64551 -10.44421 -9.91115 -9.31202 -8.79239 -8.45767 -7.94065 -7.17640 -4.92665 1.30723 2.23924 2.93840 2.95902 3.00011 3.07430 3.18873 3.52951 3.75030 4.26617 4.35010 4.60549 4.82743 4.94406 5.44155 5.71243 5.96433 6.09379 6.10970 6.62023 6.78302 6.85191 7.10515 7.81212 7.94841 8.07023 8.33112 8.80469 9.79213 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.013219 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.000229 B = 2117.623402 C = 3475.099205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.277 3.723 3 C -0.041 4.041 4 C 0.022 3.978 5 N -0.433 5.433 6 C -0.038 4.038 7 C 0.350 3.650 8 F -0.205 7.205 9 F -0.194 7.194 10 C 0.097 3.903 11 C -0.435 4.435 12 H 0.104 0.896 13 C 0.086 3.914 14 N -0.752 5.752 15 Si 0.906 3.094 16 H -0.257 1.257 17 H -0.275 1.275 18 H -0.259 1.259 19 C -0.004 4.004 20 Cl -0.058 7.058 21 H 0.148 0.852 22 H 0.109 0.891 23 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -0.717 2.067 3.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.039 4.039 3 C -0.048 4.048 4 C -0.140 4.140 5 N -0.141 5.141 6 C -0.180 4.180 7 C 0.295 3.705 8 F -0.186 7.186 9 F -0.175 7.175 10 C 0.091 3.909 11 C -0.461 4.461 12 H 0.122 0.878 13 C -0.139 4.139 14 N -0.373 5.373 15 Si 0.729 3.271 16 H -0.181 1.181 17 H -0.199 1.199 18 H -0.183 1.183 19 C -0.041 4.041 20 Cl -0.029 7.029 21 H 0.165 0.835 22 H 0.126 0.874 23 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.543 -0.211 2.337 2.808 hybrid contribution 0.027 -1.060 -1.559 1.886 sum 1.570 -1.271 0.777 2.164 Atomic orbital electron populations 1.81089 1.12077 1.09341 1.09038 1.25627 0.92603 0.92895 0.92732 1.16840 0.84460 1.03647 0.99821 1.21689 0.88661 1.03978 0.99693 1.66525 1.07414 1.16788 1.23327 1.21462 0.94409 1.02936 0.99227 1.19541 0.87424 0.78265 0.85265 1.92939 1.88502 1.41404 1.95749 1.92990 1.88119 1.84952 1.51448 1.17777 0.89419 0.90884 0.92836 1.19635 1.11474 1.24535 0.90503 0.87805 1.25791 0.93527 0.95403 0.99155 1.69780 1.23762 1.25637 1.18170 0.86324 0.80558 0.81695 0.78538 1.18145 1.19946 1.18297 1.21485 0.92438 0.99350 0.90842 1.98279 1.77283 1.73171 1.54150 0.83451 0.87406 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.94 18.54 41.83 0.78 -8.17 14 2 C 0.28 5.52 14.51 -22.47 -0.33 5.19 14 3 C -0.04 -0.84 5.74 -106.81 -0.61 -1.45 14 4 C 0.02 0.42 10.91 -16.91 -0.18 0.23 14 5 N -0.43 -8.79 10.21 -8.50 -0.09 -8.88 14 6 C -0.04 -0.81 6.34 -81.77 -0.52 -1.33 14 7 C 0.35 6.66 5.13 36.01 0.18 6.84 14 8 F -0.20 -3.96 15.77 2.25 0.04 -3.93 14 9 F -0.19 -4.01 16.56 2.25 0.04 -3.98 14 10 C 0.10 2.24 5.25 -106.68 -0.56 1.68 14 11 C -0.43 -10.09 7.19 -37.74 -0.27 -10.36 14 12 H 0.10 2.38 6.60 -52.49 -0.35 2.03 14 13 C 0.09 1.93 3.83 -17.34 -0.07 1.86 14 14 N -0.75 -17.47 11.14 55.55 0.62 -16.86 14 15 Si 0.91 17.37 29.61 -169.99 -5.03 12.34 14 16 H -0.26 -4.92 7.11 56.52 0.40 -4.52 14 17 H -0.27 -5.15 7.11 56.52 0.40 -4.75 14 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 19 C 0.00 -0.09 6.01 -37.97 -0.23 -0.32 14 20 Cl -0.06 -1.26 24.26 -51.86 -1.26 -2.52 14 21 H 0.15 2.35 8.06 -52.49 -0.42 1.92 14 22 H 0.11 1.68 8.11 -51.93 -0.42 1.26 14 23 H 0.29 6.28 8.30 -40.82 -0.34 5.94 14 LS Contribution 243.35 15.07 3.67 3.67 Total: -1.00 -24.43 243.35 -4.15 -28.58 By element: Atomic # 1 Polarization: -2.29 SS G_CDS: -0.32 Total: -2.61 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.58 Total: 2.35 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 1.31 Total: -33.90 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 0.07 Total: -7.90 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.26 Total: -2.52 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -24.43 -4.15 -28.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621767.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.536 kcal (2) G-P(sol) polarization free energy of solvation -24.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds