Wall clock time and date at job start Mon Mar 30 2020 06:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.42417 * 121.06649 * 274.89172 * 3 2 1 5 5 C 1.40755 * 120.76431 * 0.02562 * 4 3 2 6 6 H 1.08007 * 119.99956 * 330.22504 * 5 4 3 7 7 C 1.40286 * 120.00233 * 150.22017 * 5 4 3 8 8 N 1.30639 * 120.00027 * 161.98295 * 7 5 4 9 9 Si 1.86799 * 120.00232 * 341.99155 * 7 5 4 10 10 H 1.48495 * 109.47097 * 95.38395 * 9 7 5 11 11 H 1.48494 * 109.47287 * 215.38425 * 9 7 5 12 12 H 1.48507 * 109.46688 * 335.38695 * 9 7 5 13 13 C 1.40845 * 118.47456 * 180.02562 * 4 3 2 14 14 N 1.31329 * 120.56344 * 0.02842 * 13 4 3 15 15 C 1.32160 * 122.39497 * 359.97329 * 14 13 4 16 16 C 1.50702 * 119.25177 * 179.97438 * 15 14 13 17 17 F 1.39901 * 109.47056 * 30.00527 * 16 15 14 18 18 F 1.39900 * 109.46734 * 149.99917 * 16 15 14 19 19 C 1.38375 * 121.49193 * 0.02562 * 15 14 13 20 20 Cl 1.73601 * 120.39280 * 179.97438 * 19 15 14 21 21 H 0.97007 * 120.00118 * 179.97438 * 8 7 5 22 22 H 1.08002 * 119.72296 * 179.97438 * 13 4 3 23 23 H 1.08997 * 109.47429 * 270.00355 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3029 -0.1031 1.2155 5 6 2.6385 -0.2097 2.4517 6 1 1.6675 0.2444 2.5839 7 6 3.2374 -0.9058 3.5122 8 7 2.8176 -0.7201 4.7353 9 14 4.6355 -2.0982 3.1756 10 1 5.9345 -1.4065 3.3739 11 1 4.5400 -3.2491 4.1090 12 1 4.5432 -2.5866 1.7762 13 6 4.7099 -0.0964 1.1520 14 7 5.3259 0.0038 -0.0035 15 6 4.6724 0.1015 -1.1481 16 6 5.4511 0.2137 -2.4334 17 9 6.6710 -0.4579 -2.2997 18 9 4.7151 -0.3594 -3.4760 19 6 3.2893 0.1042 -1.1928 20 17 2.4600 0.2347 -2.7123 21 1 3.2315 -1.2017 5.4686 22 1 5.2873 -0.1736 2.0615 23 1 5.6372 1.2646 -2.6549 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238629429.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:44 Heat of formation + Delta-G solvation = -51.335291 kcal Electronic energy + Delta-G solvation = -16409.172777 eV Core-core repulsion = 13112.021054 eV Total energy + Delta-G solvation = -3297.151723 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.40577 -46.42557 -39.32378 -36.20140 -35.75106 -34.63423 -32.14887 -31.16189 -27.95505 -24.32921 -23.81784 -21.90354 -18.57755 -18.38863 -17.01468 -16.93295 -16.03335 -15.52751 -15.28221 -14.83262 -14.05603 -13.68237 -13.28515 -13.20279 -12.98062 -12.53809 -12.43593 -12.22466 -12.11435 -11.80464 -11.51488 -11.28411 -11.24078 -10.91150 -10.56713 -10.22519 -9.82234 -8.91629 -8.79679 -8.32421 -7.71703 -5.33469 1.42807 1.68231 2.47815 2.72120 2.83077 2.91026 3.44792 3.49105 3.66548 3.99463 4.18835 4.62412 4.70664 4.74365 5.22054 5.43514 5.67644 5.74173 6.02650 6.34283 6.36212 6.55158 7.05166 7.47434 7.63320 7.84791 8.34836 8.65312 9.24113 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.009593 C = 0.007038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.359348 B = 2917.983145 C = 3977.442581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.293 3.707 3 C -0.129 4.129 4 C 0.072 3.928 5 C -0.370 4.370 6 H 0.108 0.892 7 C 0.077 3.923 8 N -0.744 5.744 9 Si 0.909 3.091 10 H -0.251 1.251 11 H -0.273 1.273 12 H -0.237 1.237 13 C 0.013 3.987 14 N -0.399 5.399 15 C -0.110 4.110 16 C 0.344 3.656 17 F -0.198 7.198 18 F -0.199 7.199 19 C 0.054 3.946 20 Cl -0.065 7.065 21 H 0.303 0.697 22 H 0.152 0.848 23 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 0.503 -4.864 7.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.020 4.020 3 C -0.140 4.140 4 C 0.064 3.936 5 C -0.396 4.396 6 H 0.125 0.875 7 C -0.151 4.151 8 N -0.362 5.362 9 Si 0.732 3.268 10 H -0.176 1.176 11 H -0.199 1.199 12 H -0.159 1.159 13 C -0.159 4.159 14 N -0.107 5.107 15 C -0.241 4.241 16 C 0.289 3.711 17 F -0.180 7.180 18 F -0.180 7.180 19 C 0.022 3.978 20 Cl -0.036 7.036 21 H 0.115 0.885 22 H 0.169 0.831 23 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.478 0.480 -4.862 6.627 hybrid contribution -0.062 -0.534 0.082 0.544 sum 4.416 -0.054 -4.780 6.508 Atomic orbital electron populations 1.81057 1.12001 1.12048 1.08594 1.25048 0.92017 0.92507 0.92396 1.15722 0.84691 1.21739 0.91827 1.18390 0.92472 0.91117 0.91615 1.19838 1.04862 1.23121 0.91805 0.87455 1.26530 0.97923 0.96962 0.93735 1.69540 1.35178 1.30908 1.00622 0.86303 0.79473 0.79322 0.81719 1.17587 1.19940 1.15924 1.22651 0.91213 1.07573 0.94485 1.66571 1.40281 1.06411 0.97395 1.20165 0.88268 1.21699 0.93990 1.19743 0.75623 0.93278 0.82454 1.92958 1.45439 1.83374 1.96185 1.93031 1.77534 1.87581 1.59867 1.21442 0.92107 0.98307 0.85922 1.98353 1.78799 1.95891 1.30554 0.88498 0.83141 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.42 18.54 41.84 0.78 -9.64 14 2 C 0.29 6.46 13.47 -22.47 -0.30 6.16 14 3 C -0.13 -2.79 5.83 -105.79 -0.62 -3.40 14 4 C 0.07 1.58 5.14 -106.35 -0.55 1.03 14 5 C -0.37 -8.33 9.00 -37.86 -0.34 -8.67 14 6 H 0.11 2.61 7.62 -52.48 -0.40 2.21 14 7 C 0.08 1.63 5.42 -17.29 -0.09 1.54 14 8 N -0.74 -16.00 13.92 55.57 0.77 -15.22 14 9 Si 0.91 16.76 24.53 -169.99 -4.17 12.59 14 10 H -0.25 -4.35 6.72 56.52 0.38 -3.97 14 11 H -0.27 -4.83 7.11 56.52 0.40 -4.43 14 12 H -0.24 -4.67 6.85 56.52 0.39 -4.28 14 13 C 0.01 0.26 8.37 -16.78 -0.14 0.12 14 14 N -0.40 -8.31 9.89 -8.82 -0.09 -8.39 14 15 C -0.11 -2.18 6.59 -82.40 -0.54 -2.72 14 16 C 0.34 5.77 5.53 36.01 0.20 5.97 14 17 F -0.20 -3.55 17.04 2.25 0.04 -3.51 14 18 F -0.20 -3.40 14.11 2.25 0.03 -3.36 14 19 C 0.05 1.09 6.30 -38.95 -0.25 0.84 14 20 Cl -0.06 -1.17 24.94 -51.86 -1.29 -2.46 14 21 H 0.30 5.71 8.29 -40.82 -0.34 5.37 14 22 H 0.15 2.92 4.74 -52.49 -0.25 2.67 14 23 H 0.11 1.47 8.14 -51.93 -0.42 1.05 14 LS Contribution 238.10 15.07 3.59 3.59 Total: -1.00 -23.72 238.10 -3.21 -26.93 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -0.24 Total: -1.38 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.63 Total: 0.87 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 1.46 Total: -33.26 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.07 Total: -6.88 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -4.17 Total: 12.59 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.29 Total: -2.46 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -23.72 -3.21 -26.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238629429.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.403 kcal (2) G-P(sol) polarization free energy of solvation -23.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds