Wall clock time and date at job start Mon Mar 30 2020 06:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39827 * 121.07061 * 353.62679 * 3 2 1 5 5 Cl 1.73603 * 120.39094 * 0.02947 * 4 3 2 6 6 C 1.38330 * 119.21554 * 179.75522 * 4 3 2 7 7 N 1.32187 * 121.49139 * 0.53991 * 6 4 3 8 8 C 1.31306 * 122.39732 * 359.74414 * 7 6 4 9 9 C 1.50705 * 119.71791 * 179.97438 * 8 7 6 10 10 F 1.39898 * 109.47363 * 21.62262 * 9 8 7 11 11 F 1.39897 * 109.46877 * 141.62622 * 9 8 7 12 12 C 1.40875 * 120.55830 * 359.96580 * 8 7 6 13 13 C 1.40759 * 120.76043 * 180.02562 * 12 8 7 14 14 H 1.07996 * 120.00275 * 317.28006 * 13 12 8 15 15 C 1.40289 * 119.99608 * 137.27579 * 13 12 8 16 16 N 1.30635 * 120.00215 * 339.21658 * 15 13 12 17 17 Si 1.86803 * 119.99915 * 159.22149 * 15 13 12 18 18 H 1.48502 * 109.47197 * 59.99755 * 17 15 13 19 19 H 1.48498 * 109.47235 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46986 * 299.99816 * 17 15 13 21 21 H 1.07998 * 119.25829 * 180.27839 * 6 4 3 22 22 H 1.09001 * 109.46670 * 261.62737 * 9 8 7 23 23 H 0.97002 * 120.00231 * 185.18725 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2901 -1.1893 0.1329 5 17 2.4614 -2.7054 0.3015 6 6 4.6726 -1.1448 0.1228 7 7 5.3258 -0.0020 0.0010 8 6 4.7096 1.1509 -0.1219 9 6 5.5147 2.4178 -0.2565 10 9 6.8005 2.1071 -0.7117 11 9 4.8899 3.2724 -1.1711 12 6 3.3022 1.2136 -0.1293 13 6 2.6372 2.4472 -0.2614 14 1 2.9874 3.3106 0.2847 15 6 1.5196 2.5549 -1.1024 16 7 1.3299 1.6784 -2.0523 17 14 0.3026 3.9520 -0.8642 18 1 1.0023 5.2515 -1.0289 19 1 -0.7809 3.8423 -1.8737 20 1 -0.2807 3.8732 0.4993 21 1 5.2311 -2.0639 0.2209 22 1 5.5819 2.9102 0.7136 23 1 0.6002 1.7944 -2.6808 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238633878.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:39 Heat of formation + Delta-G solvation = -72.778124 kcal Electronic energy + Delta-G solvation = -16698.775574 eV Core-core repulsion = 13400.694020 eV Total energy + Delta-G solvation = -3298.081554 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.59611 -47.61764 -40.76157 -37.64115 -37.46370 -35.84252 -33.13092 -32.78786 -28.48292 -27.09956 -24.77416 -23.18356 -20.16024 -19.30962 -18.35220 -18.09390 -17.40505 -17.13375 -16.65522 -16.25189 -15.26343 -15.08152 -14.53136 -14.44996 -14.03211 -13.98920 -13.71386 -13.66922 -13.57613 -13.33522 -13.06506 -12.88725 -12.57152 -12.27812 -12.23113 -11.70167 -11.30718 -10.45662 -10.17328 -9.70034 -9.00668 -6.77510 -0.14240 0.38548 1.03371 1.28926 1.39021 1.40370 1.96729 2.02098 2.23405 2.57279 2.93503 3.22285 3.32531 3.44334 3.87192 4.26287 4.29979 4.46887 4.56001 4.92044 5.06033 5.22706 5.47388 5.98541 6.27270 6.43636 6.84159 7.14775 7.94128 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.013249 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.063477 B = 2112.837020 C = 3764.319873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.321 3.679 3 C -0.107 4.107 4 C 0.012 3.988 5 Cl -0.063 7.063 6 C -0.017 4.017 7 N -0.415 5.415 8 C -0.045 4.045 9 C 0.345 3.655 10 F -0.207 7.207 11 F -0.197 7.197 12 C 0.115 3.885 13 C -0.445 4.445 14 H 0.120 0.880 15 C 0.050 3.950 16 N -0.787 5.787 17 Si 0.957 3.043 18 H -0.236 1.236 19 H -0.277 1.277 20 H -0.262 1.262 21 H 0.179 0.821 22 H 0.153 0.847 23 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.416 0.841 3.534 5.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C 0.009 3.991 3 C -0.119 4.119 4 C -0.020 4.020 5 Cl -0.034 7.034 6 C -0.171 4.171 7 N -0.123 5.123 8 C -0.193 4.193 9 C 0.291 3.709 10 F -0.188 7.188 11 F -0.178 7.178 12 C 0.107 3.893 13 C -0.473 4.473 14 H 0.138 0.862 15 C -0.172 4.172 16 N -0.409 5.409 17 Si 0.778 3.222 18 H -0.159 1.159 19 H -0.202 1.202 20 H -0.186 1.186 21 H 0.196 0.804 22 H 0.170 0.830 23 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.336 0.536 3.341 4.752 hybrid contribution -1.279 0.145 -0.465 1.369 sum 2.057 0.680 2.876 3.601 Atomic orbital electron populations 1.80903 1.12856 1.10430 1.12756 1.25017 0.92270 0.90850 0.90994 1.16361 0.84872 0.94084 1.16544 1.22143 0.94058 0.85487 1.00290 1.98329 1.78947 1.30406 1.95719 1.22129 0.87953 0.96432 1.10619 1.66771 1.40700 0.97948 1.06891 1.21963 0.91333 0.94034 1.11923 1.19995 0.73846 0.85676 0.91353 1.92930 1.40481 1.94016 1.91410 1.93006 1.82852 1.71127 1.70832 1.18033 0.90960 0.92329 0.87967 1.19887 1.08741 0.96548 1.22099 0.86230 1.26664 0.97825 0.99485 0.93218 1.69610 1.27396 1.34079 1.09821 0.85539 0.77760 0.79459 0.79463 1.15884 1.20185 1.18609 0.80369 0.83037 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -23.83 18.50 19.00 0.35 -23.48 14 2 C 0.32 15.19 10.85 88.33 0.96 16.15 14 3 C -0.11 -4.82 5.49 -20.62 -0.11 -4.93 14 4 C 0.01 0.47 6.37 22.68 0.14 0.61 14 5 Cl -0.06 -2.19 28.14 -2.72 -0.08 -2.26 14 6 C -0.02 -0.64 10.96 84.66 0.93 0.29 14 7 N -0.42 -16.60 9.81 -181.87 -1.78 -18.38 14 8 C -0.05 -1.85 6.65 43.28 0.29 -1.56 14 9 C 0.35 12.11 5.30 71.24 0.38 12.48 14 10 F -0.21 -7.49 16.97 44.97 0.76 -6.73 14 11 F -0.20 -7.67 14.99 44.97 0.67 -6.99 14 12 C 0.11 5.14 5.29 -20.99 -0.11 5.03 14 13 C -0.45 -19.64 6.50 23.39 0.15 -19.49 14 14 H 0.12 4.74 7.48 -2.91 -0.02 4.72 14 15 C 0.05 2.26 4.10 85.37 0.35 2.61 14 16 N -0.79 -38.08 11.22 21.88 0.25 -37.84 14 17 Si 0.96 35.84 29.61 68.60 2.03 37.87 14 18 H -0.24 -8.00 7.11 99.48 0.71 -7.29 14 19 H -0.28 -10.48 7.11 99.48 0.71 -9.77 14 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 14 21 H 0.18 5.39 8.06 -2.91 -0.02 5.36 14 22 H 0.15 3.98 8.14 -2.39 -0.02 3.96 14 23 H 0.30 13.64 8.30 -92.71 -0.77 12.87 14 Total: -1.00 -52.48 244.06 6.47 -46.01 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: 1.29 Total: 0.61 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 2.97 Total: 11.18 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -1.19 Total: -79.69 kcal Atomic # 9 Polarization: -15.16 SS G_CDS: 1.44 Total: -13.72 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.26 kcal Total: -52.48 6.47 -46.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238633878.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.767 kcal (2) G-P(sol) polarization free energy of solvation -52.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds