Wall clock time and date at job start Mon Mar 30 2020 06:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.46855 * 121.00699 * 269.83960 * 3 2 1 5 5 C 1.40845 * 121.37467 * 0.02562 * 4 3 2 6 6 H 1.08001 * 120.00057 * 138.51340 * 5 4 3 7 7 C 1.40336 * 119.99814 * 318.24334 * 5 4 3 8 8 N 1.30592 * 120.00025 * 339.68831 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 159.69109 * 7 5 4 10 10 H 1.48498 * 109.47052 * 89.99837 * 9 7 5 11 11 H 1.48502 * 109.46730 * 209.99807 * 9 7 5 12 12 H 1.48494 * 109.47033 * 329.99535 * 9 7 5 13 13 C 1.41297 * 117.25536 * 179.74907 * 4 3 2 14 14 Cl 1.73603 * 120.56163 * 180.27110 * 13 4 3 15 15 C 1.37792 * 118.87758 * 0.24849 * 13 4 3 16 16 N 1.31937 * 121.96658 * 0.02562 * 15 13 4 17 17 C 1.31616 * 123.20612 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.64921 * 180.02562 * 17 16 15 19 19 F 1.39899 * 109.47714 * 29.99531 * 18 17 16 20 20 F 1.39905 * 109.47574 * 149.99927 * 18 17 16 21 21 H 0.96997 * 120.00010 * 185.56715 * 8 7 5 22 22 H 1.08000 * 119.01799 * 179.97438 * 15 13 4 23 23 H 1.09008 * 109.47169 * 269.99536 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3245 0.0045 1.2587 5 6 2.6716 0.0072 2.5067 6 1 3.0426 -0.6101 3.3115 7 6 1.5423 0.8161 2.7060 8 7 1.3233 1.8366 1.9210 9 14 0.3524 0.4334 4.0942 10 1 0.7768 1.1524 5.3222 11 1 -1.0134 0.8723 3.7105 12 1 0.3480 -1.0288 4.3533 13 6 4.7345 -0.0006 1.1663 14 17 5.7131 -0.0037 2.6002 15 6 5.3196 -0.0036 -0.0813 16 7 4.6028 -0.0014 -1.1889 17 6 3.2867 0.0034 -1.1958 18 6 2.5480 0.0051 -2.5094 19 9 3.3127 -0.6578 -3.4753 20 9 1.3214 -0.6499 -2.3556 21 1 0.5892 2.4426 2.1068 22 1 6.3971 -0.0071 -0.1546 23 1 2.3736 1.0332 -2.8268 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238635097.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:45 Heat of formation + Delta-G solvation = -72.338607 kcal Electronic energy + Delta-G solvation = -16625.214242 eV Core-core repulsion = 13327.151747 eV Total energy + Delta-G solvation = -3298.062495 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.01441 -48.02249 -40.51990 -37.34015 -37.12227 -35.91738 -32.98472 -32.68730 -28.36124 -27.53199 -24.90065 -22.82698 -20.11122 -19.34905 -18.52282 -18.35361 -17.88384 -17.33097 -16.62167 -16.06461 -15.14713 -14.98923 -14.85708 -14.51921 -14.44066 -13.92002 -13.84648 -13.72424 -13.48966 -13.23033 -13.10532 -12.80789 -12.44830 -12.27510 -12.08360 -11.64212 -11.28421 -10.33579 -9.94008 -9.69652 -9.05883 -6.88575 -0.14519 0.49290 1.26657 1.36251 1.41491 1.50137 1.99653 2.13229 2.26815 2.56766 2.60153 3.12017 3.18562 3.41999 3.51130 3.94931 4.22057 4.41961 4.65072 4.83574 4.92575 5.19157 5.58965 5.99623 6.26429 6.42396 6.93692 7.15292 7.89839 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.011357 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.685465 B = 2464.860169 C = 3871.420959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.321 3.679 3 C -0.155 4.155 4 C 0.153 3.847 5 C -0.446 4.446 6 H 0.111 0.889 7 C 0.053 3.947 8 N -0.776 5.776 9 Si 0.957 3.043 10 H -0.243 1.243 11 H -0.278 1.278 12 H -0.252 1.252 13 C -0.169 4.169 14 Cl -0.064 7.064 15 C 0.148 3.852 16 N -0.540 5.540 17 C 0.113 3.887 18 C 0.324 3.676 19 F -0.191 7.191 20 F -0.205 7.205 21 H 0.299 0.701 22 H 0.179 0.821 23 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 -0.206 -0.676 4.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C 0.009 3.991 3 C -0.166 4.166 4 C 0.142 3.858 5 C -0.475 4.475 6 H 0.129 0.871 7 C -0.171 4.171 8 N -0.398 5.398 9 Si 0.777 3.223 10 H -0.166 1.166 11 H -0.203 1.203 12 H -0.175 1.175 13 C -0.200 4.200 14 Cl -0.036 7.036 15 C -0.004 4.004 16 N -0.254 5.254 17 C -0.027 4.027 18 C 0.270 3.730 19 F -0.172 7.172 20 F -0.186 7.186 21 H 0.111 0.889 22 H 0.196 0.804 23 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.083 -0.069 -1.466 3.414 hybrid contribution -0.558 -0.003 1.480 1.581 sum 2.525 -0.072 0.014 2.526 Atomic orbital electron populations 1.80905 1.12886 1.12922 1.10870 1.24979 0.92214 0.91196 0.90710 1.17691 0.85086 1.19822 0.93961 1.18623 0.89671 0.85711 0.91750 1.19883 1.08265 1.21469 0.97844 0.87099 1.26660 0.97417 0.93311 0.99703 1.69556 1.26678 1.08798 1.34725 0.85496 0.77143 0.81005 0.78634 1.16622 1.20311 1.17545 1.22066 0.91333 1.17960 0.88677 1.98254 1.68925 1.97332 1.39051 1.22495 1.00455 0.92362 0.85085 1.67017 1.05198 1.22694 1.30466 1.21430 0.91601 0.97321 0.92391 1.20383 0.74474 0.94417 0.83768 1.92979 1.76028 1.83782 1.64398 1.92997 1.45309 1.84550 1.95728 0.88947 0.80419 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.33 18.37 19.00 0.35 -23.98 14 2 C 0.32 15.28 9.10 88.33 0.80 16.09 14 3 C -0.16 -7.06 5.60 -19.47 -0.11 -7.17 14 4 C 0.15 6.92 5.46 -19.63 -0.11 6.81 14 5 C -0.45 -20.28 8.09 23.42 0.19 -20.09 14 6 H 0.11 4.80 7.75 -2.91 -0.02 4.77 14 7 C 0.05 2.36 4.21 85.39 0.36 2.72 14 8 N -0.78 -36.43 11.14 21.89 0.24 -36.18 14 9 Si 0.96 35.81 29.61 68.60 2.03 37.84 14 10 H -0.24 -8.29 7.11 99.48 0.71 -7.58 14 11 H -0.28 -10.79 7.11 99.48 0.71 -10.08 14 12 H -0.25 -9.34 7.11 99.48 0.71 -8.63 14 13 C -0.17 -6.74 6.40 22.92 0.15 -6.59 14 14 Cl -0.06 -2.22 28.09 -2.72 -0.08 -2.30 14 15 C 0.15 5.40 10.91 84.57 0.92 6.32 14 16 N -0.54 -21.10 9.86 -183.33 -1.81 -22.91 14 17 C 0.11 4.59 6.63 42.90 0.28 4.88 14 18 C 0.32 11.37 5.54 71.23 0.39 11.77 14 19 F -0.19 -6.64 17.06 44.97 0.77 -5.87 14 20 F -0.20 -8.03 14.55 44.97 0.65 -7.37 14 21 H 0.30 13.20 8.30 -92.71 -0.77 12.43 14 22 H 0.18 5.16 8.06 -2.91 -0.02 5.13 14 23 H 0.16 4.39 8.14 -2.38 -0.02 4.37 14 Total: -1.00 -51.96 244.22 6.33 -45.63 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: 1.29 Total: 0.42 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 2.89 Total: 14.73 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.21 Total: -83.07 kcal Atomic # 9 Polarization: -14.67 SS G_CDS: 1.42 Total: -13.25 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.08 Total: -2.30 kcal Total: -51.96 6.33 -45.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238635097.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.707 kcal (2) G-P(sol) polarization free energy of solvation -51.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds