Wall clock time and date at job start Mon Mar 30 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39655 * 120.74305 * 220.47382 * 3 2 1 5 5 Cl 1.73601 * 119.63060 * 359.97438 * 4 3 2 6 6 N 1.31749 * 120.73652 * 180.02562 * 4 3 2 7 7 C 1.32201 * 122.51005 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.29681 * 180.02562 * 7 6 4 9 9 F 1.39903 * 109.46733 * 29.99627 * 8 7 6 10 10 F 1.39902 * 109.47468 * 149.99919 * 8 7 6 11 11 C 1.37607 * 121.41345 * 359.70923 * 7 6 4 12 12 C 1.41069 * 119.04198 * 0.56549 * 11 7 6 13 13 C 1.40935 * 121.10866 * 179.72878 * 12 11 7 14 14 H 1.07989 * 120.00373 * 155.06081 * 13 12 11 15 15 C 1.40325 * 119.99148 * 335.06119 * 13 12 11 16 16 N 1.30592 * 120.00251 * 334.75836 * 15 13 12 17 17 Si 1.86801 * 119.99532 * 154.76943 * 15 13 12 18 18 H 1.48503 * 109.47259 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47223 * 299.99209 * 17 15 13 20 20 H 1.48500 * 109.47285 * 59.99383 * 17 15 13 21 21 H 1.09005 * 109.46966 * 270.00401 * 8 7 6 22 22 H 1.07995 * 120.47569 * 180.29408 * 11 7 6 23 23 H 0.97000 * 120.00028 * 354.20405 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2815 0.9140 0.7791 5 17 2.4228 2.0620 1.7581 6 7 4.5990 0.9148 0.7786 7 6 5.3097 0.0677 0.0541 8 6 6.8143 0.1324 0.1089 9 9 7.2157 0.5909 1.3683 10 9 7.3445 -1.1429 -0.1139 11 6 4.7052 -0.8762 -0.7440 12 6 3.2964 -0.9288 -0.7955 13 6 2.6319 -1.8740 -1.6025 14 1 1.6281 -2.1853 -1.3544 15 6 3.2750 -2.4106 -2.7284 16 7 4.2239 -1.7371 -3.3213 17 14 2.7734 -4.0881 -3.3794 18 1 3.5979 -4.4247 -4.5677 19 1 2.9840 -5.1117 -2.3243 20 1 1.3393 -4.0613 -3.7639 21 1 7.1768 0.8159 -0.6590 22 1 5.3006 -1.5640 -1.3260 23 1 4.4272 -0.8324 -3.0366 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238640894.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:38 Heat of formation + Delta-G solvation = -85.195976 kcal Electronic energy + Delta-G solvation = -16278.421462 eV Core-core repulsion = 12979.801430 eV Total energy + Delta-G solvation = -3298.620032 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.94006 -47.95291 -40.94149 -37.78105 -37.44010 -36.66823 -33.31520 -32.38390 -28.54864 -27.65131 -24.37078 -23.48874 -20.63731 -19.48404 -18.52925 -18.43724 -18.15691 -17.23106 -16.45610 -15.84058 -15.65543 -15.14667 -14.81820 -14.76397 -14.30617 -14.24193 -14.11644 -13.79053 -13.67408 -13.11244 -13.07331 -12.67784 -12.35326 -12.23073 -12.05205 -11.89476 -11.31942 -10.56074 -10.51347 -9.98423 -9.57189 -7.11968 -0.33734 0.45150 0.73083 1.50573 1.55799 1.80776 1.82290 1.95732 2.19296 2.43223 2.59221 3.07099 3.13125 3.32075 3.60888 3.98777 4.20223 4.39250 4.49477 4.73751 5.01760 5.18904 5.51341 5.54089 6.03061 6.26506 6.65195 6.88253 7.62534 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.010368 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.853428 B = 2700.047824 C = 4364.259221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.303 3.697 3 C -0.217 4.217 4 C 0.266 3.734 5 Cl -0.039 7.039 6 N -0.558 5.558 7 C 0.077 3.923 8 C 0.333 3.667 9 F -0.199 7.199 10 F -0.200 7.200 11 C -0.215 4.215 12 C 0.113 3.887 13 C -0.463 4.463 14 H 0.087 0.913 15 C 0.014 3.986 16 N -0.751 5.751 17 Si 1.111 2.889 18 H -0.259 1.259 19 H -0.257 1.257 20 H -0.261 1.261 21 H 0.166 0.834 22 H 0.138 0.862 23 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -0.263 -0.067 4.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.009 4.009 3 C -0.229 4.229 4 C 0.095 3.905 5 Cl -0.010 7.010 6 N -0.275 5.275 7 C -0.050 4.050 8 C 0.278 3.722 9 F -0.181 7.181 10 F -0.182 7.182 11 C -0.237 4.237 12 C 0.103 3.897 13 C -0.490 4.490 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.370 5.370 17 Si 0.926 3.074 18 H -0.183 1.183 19 H -0.181 1.181 20 H -0.186 1.186 21 H 0.183 0.817 22 H 0.156 0.844 23 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.080 -0.641 -0.607 4.175 hybrid contribution -0.494 0.910 1.061 1.482 sum 3.587 0.269 0.454 3.626 Atomic orbital electron populations 1.81018 1.12342 1.11173 1.12134 1.25242 0.92209 0.91804 0.91607 1.16479 0.84932 1.06259 1.15191 1.21171 0.89382 0.89211 0.90691 1.98352 1.74099 1.59232 1.69341 1.66332 1.05442 1.28877 1.26856 1.21312 0.95685 0.93327 0.94688 1.20363 0.86554 0.80981 0.84259 1.92975 1.91472 1.88721 1.44889 1.92987 1.87114 1.43306 1.94753 1.21843 0.94342 1.02157 1.05393 1.17745 0.91678 0.89501 0.90728 1.21137 1.03280 1.16558 1.08058 0.89485 1.28657 0.91165 1.08132 0.93161 1.70505 1.20364 1.12100 1.34036 0.83044 0.77797 0.68828 0.77701 1.18304 1.18071 1.18585 0.81708 0.84401 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -22.26 18.54 19.00 0.35 -21.91 14 2 C 0.30 13.64 13.30 88.33 1.17 14.82 14 3 C -0.22 -9.65 5.82 -20.66 -0.12 -9.77 14 4 C 0.27 11.19 7.31 85.05 0.62 11.81 14 5 Cl -0.04 -1.43 28.18 -2.72 -0.08 -1.51 14 6 N -0.56 -23.06 9.88 -174.23 -1.72 -24.78 14 7 C 0.08 3.00 6.58 42.35 0.28 3.28 14 8 C 0.33 10.35 5.71 71.24 0.41 10.76 14 9 F -0.20 -6.70 17.04 44.97 0.77 -5.94 14 10 F -0.20 -6.49 16.42 44.97 0.74 -5.76 14 11 C -0.21 -8.88 7.33 22.82 0.17 -8.71 14 12 C 0.11 5.05 5.35 -20.89 -0.11 4.94 14 13 C -0.46 -20.58 8.50 23.44 0.20 -20.38 14 14 H 0.09 3.95 7.42 -2.92 -0.02 3.93 14 15 C 0.01 0.55 4.99 85.38 0.43 0.98 14 16 N -0.75 -31.62 12.33 21.89 0.27 -31.35 14 17 Si 1.11 34.71 30.00 68.60 2.06 36.77 14 18 H -0.26 -7.84 7.11 99.48 0.71 -7.13 14 19 H -0.26 -7.63 7.11 99.48 0.71 -6.92 14 20 H -0.26 -7.87 7.11 99.48 0.71 -7.16 14 21 H 0.17 3.74 8.14 -2.38 -0.02 3.72 14 22 H 0.14 5.65 6.06 -2.91 -0.02 5.63 14 23 H 0.30 12.81 6.65 -92.71 -0.62 12.20 14 Total: -1.00 -49.36 246.89 6.88 -42.49 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.45 Total: 4.27 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 3.04 Total: 7.72 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.10 Total: -78.04 kcal Atomic # 9 Polarization: -13.20 SS G_CDS: 1.50 Total: -11.69 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.06 Total: 36.77 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -49.36 6.88 -42.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238640894.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.707 kcal (2) G-P(sol) polarization free energy of solvation -49.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds