Wall clock time and date at job start Mon Mar 30 2020 06:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 N 1.32384 * 119.63726 * 354.50296 * 3 2 1 5 5 C 1.33340 * 121.42443 * 180.27276 * 4 3 2 6 6 C 1.41385 * 119.73366 * 179.97438 * 5 4 3 7 7 H 1.08007 * 119.99660 * 166.07028 * 6 5 4 8 8 C 1.40015 * 120.00238 * 346.07231 * 6 5 4 9 9 N 1.30743 * 120.00204 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99963 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47376 * 89.99586 * 10 8 6 12 12 H 1.48498 * 109.46825 * 209.99827 * 10 8 6 13 13 H 1.48505 * 109.46803 * 329.99370 * 10 8 6 14 14 C 1.40893 * 120.52807 * 0.02562 * 5 4 3 15 15 C 1.50701 * 120.38245 * 180.02562 * 14 5 4 16 16 F 1.39900 * 109.46483 * 199.61621 * 15 14 5 17 17 F 1.39898 * 109.47468 * 319.62067 * 15 14 5 18 18 C 1.38056 * 119.22560 * 359.97438 * 14 5 4 19 19 C 1.39011 * 118.67964 * 359.97438 * 18 14 5 20 20 Cl 1.73606 * 120.29637 * 180.02562 * 19 18 14 21 21 H 0.96999 * 120.00316 * 179.97438 * 9 8 6 22 22 H 1.09006 * 109.46828 * 79.62175 * 15 14 5 23 23 H 1.08002 * 120.65375 * 180.02562 * 18 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2231 -1.1444 0.1102 5 6 4.5559 -1.1847 0.1196 6 6 5.2190 -2.4276 0.2396 7 1 6.2751 -2.4992 0.0246 8 6 4.5068 -3.5657 0.6371 9 7 3.2286 -3.4790 0.8978 10 14 5.3832 -5.2077 0.7963 11 1 5.9070 -5.3574 2.1777 12 1 4.4291 -6.3081 0.5067 13 1 6.5103 -5.2628 -0.1692 14 6 5.3085 0.0015 0.0120 15 6 6.8147 -0.0479 0.0223 16 9 7.3203 1.2143 0.3514 17 9 7.2441 -0.9838 0.9694 18 6 4.6501 1.2093 -0.1042 19 6 3.2600 1.2134 -0.1115 20 17 2.3893 2.7084 -0.2562 21 1 2.7351 -4.2674 1.1728 22 1 7.1755 -0.3378 -0.9646 23 1 5.2041 2.1326 -0.1885 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238653228.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:22 Heat of formation + Delta-G solvation = -51.106359 kcal Electronic energy + Delta-G solvation = -16385.711529 eV Core-core repulsion = 13088.569734 eV Total energy + Delta-G solvation = -3297.141796 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.28799 -46.29669 -38.97289 -35.93475 -35.65086 -34.01771 -32.04541 -30.60636 -26.73296 -25.98832 -22.37707 -21.83897 -18.69659 -17.74168 -16.78632 -16.57591 -16.37906 -15.33283 -15.00915 -13.87840 -13.82156 -13.63160 -13.11008 -12.88631 -12.73136 -12.32480 -12.26258 -11.99035 -11.94511 -11.65430 -11.42902 -11.13835 -10.80048 -10.62989 -10.52677 -10.20008 -9.63644 -8.83874 -8.40830 -8.04416 -7.00549 -5.06451 1.51020 2.27879 2.86780 2.89309 2.93165 3.00629 3.30970 3.58775 3.64178 4.33656 4.40431 4.55010 5.05725 5.18229 5.45768 5.69843 5.73956 6.09038 6.19774 6.62909 6.70419 6.82300 7.12836 7.66840 7.95229 8.10520 8.25660 9.21741 9.77283 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.009682 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.897921 B = 2891.305125 C = 4357.684885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.292 3.708 3 C 0.247 3.753 4 N -0.432 5.432 5 C 0.266 3.734 6 C -0.386 4.386 7 H 0.107 0.893 8 C 0.061 3.939 9 N -0.700 5.700 10 Si 0.920 3.080 11 H -0.263 1.263 12 H -0.272 1.272 13 H -0.255 1.255 14 C -0.310 4.310 15 C 0.337 3.663 16 F -0.216 7.216 17 F -0.195 7.195 18 C 0.004 3.996 19 C -0.197 4.197 20 Cl -0.101 7.101 21 H 0.286 0.714 22 H 0.105 0.895 23 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.936 2.043 -1.835 6.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.024 4.024 3 C 0.095 3.905 4 N -0.146 5.146 5 C 0.142 3.858 6 C -0.414 4.414 7 H 0.125 0.875 8 C -0.168 4.168 9 N -0.318 5.318 10 Si 0.743 3.257 11 H -0.188 1.188 12 H -0.197 1.197 13 H -0.179 1.179 14 C -0.317 4.317 15 C 0.283 3.717 16 F -0.197 7.197 17 F -0.177 7.177 18 C -0.020 4.020 19 C -0.233 4.233 20 Cl -0.073 7.073 21 H 0.098 0.902 22 H 0.122 0.878 23 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.559 1.178 -1.658 4.099 hybrid contribution 1.118 0.254 0.181 1.160 sum 4.677 1.432 -1.476 5.109 Atomic orbital electron populations 1.81030 1.11992 1.08991 1.08432 1.25296 0.92163 0.91802 0.93177 1.16528 0.85777 0.89581 0.98629 1.68879 1.09119 1.21369 1.15196 1.18077 0.86394 0.91657 0.89625 1.20187 0.97360 0.90732 1.33140 0.87469 1.26249 0.94842 1.01899 0.93765 1.69982 1.07604 1.31726 1.22524 0.86080 0.80106 0.79263 0.80282 1.18775 1.19693 1.17892 1.20959 0.93910 0.94972 1.21831 1.19834 0.89951 0.71728 0.90169 1.92902 1.88935 1.43412 1.94467 1.92962 1.90935 1.65258 1.68498 1.20467 0.91274 0.97217 0.93076 1.20879 0.92041 0.85080 1.25253 1.98264 1.76999 1.34649 1.97405 0.90225 0.87773 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.49 18.54 41.84 0.78 -8.71 14 2 C 0.29 6.50 14.57 -22.47 -0.33 6.17 14 3 C 0.25 5.55 6.59 -85.02 -0.56 4.99 14 4 N -0.43 -10.53 7.92 -9.02 -0.07 -10.60 14 5 C 0.27 6.15 6.48 -85.01 -0.55 5.60 14 6 C -0.39 -8.66 7.94 -37.72 -0.30 -8.96 14 7 H 0.11 2.20 5.81 -52.48 -0.30 1.90 14 8 C 0.06 1.35 5.48 -17.35 -0.10 1.25 14 9 N -0.70 -16.52 11.57 55.55 0.64 -15.88 14 10 Si 0.92 16.31 29.56 -169.99 -5.02 11.28 14 11 H -0.26 -4.68 7.11 56.52 0.40 -4.28 14 12 H -0.27 -4.78 7.11 56.52 0.40 -4.38 14 13 H -0.26 -4.38 7.11 56.52 0.40 -3.98 14 14 C -0.31 -6.29 5.79 -103.68 -0.60 -6.89 14 15 C 0.34 5.87 5.13 36.01 0.18 6.06 14 16 F -0.22 -3.68 16.27 2.25 0.04 -3.64 14 17 F -0.20 -3.72 14.56 2.25 0.03 -3.69 14 18 C 0.00 0.08 9.30 -39.36 -0.37 -0.29 14 19 C -0.20 -4.01 6.39 -38.61 -0.25 -4.26 14 20 Cl -0.10 -1.83 28.03 -51.86 -1.45 -3.29 14 21 H 0.29 6.14 8.29 -40.82 -0.34 5.80 14 22 H 0.11 1.49 8.14 -51.93 -0.42 1.06 14 23 H 0.13 2.17 7.43 -52.49 -0.39 1.78 14 LS Contribution 245.13 15.07 3.69 3.69 Total: -1.00 -24.79 245.13 -4.48 -29.27 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: -0.25 Total: -2.10 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.86 Total: 3.66 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 1.35 Total: -35.19 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.07 Total: -7.33 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -5.02 Total: 11.28 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.45 Total: -3.29 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -24.79 -4.48 -29.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238653228.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.836 kcal (2) G-P(sol) polarization free energy of solvation -24.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds