Wall clock time and date at job start Mon Mar 30 2020 06:41:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13600 * 1
3 3 C 1.43197 * 179.97438 * 2 1
4 4 N 1.32384 * 119.63726 * 354.50296 * 3 2 1
5 5 C 1.33340 * 121.42443 * 180.27276 * 4 3 2
6 6 C 1.41385 * 119.73366 * 179.97438 * 5 4 3
7 7 H 1.08007 * 119.99660 * 166.07028 * 6 5 4
8 8 C 1.40015 * 120.00238 * 346.07231 * 6 5 4
9 9 N 1.30743 * 120.00204 * 359.97438 * 8 6 5
10 10 Si 1.86806 * 119.99963 * 180.02562 * 8 6 5
11 11 H 1.48495 * 109.47376 * 89.99586 * 10 8 6
12 12 H 1.48498 * 109.46825 * 209.99827 * 10 8 6
13 13 H 1.48505 * 109.46803 * 329.99370 * 10 8 6
14 14 C 1.40893 * 120.52807 * 0.02562 * 5 4 3
15 15 C 1.50701 * 120.38245 * 180.02562 * 14 5 4
16 16 F 1.39900 * 109.46483 * 199.61621 * 15 14 5
17 17 F 1.39898 * 109.47468 * 319.62067 * 15 14 5
18 18 C 1.38056 * 119.22560 * 359.97438 * 14 5 4
19 19 C 1.39011 * 118.67964 * 359.97438 * 18 14 5
20 20 Cl 1.73606 * 120.29637 * 180.02562 * 19 18 14
21 21 H 0.96999 * 120.00316 * 179.97438 * 9 8 6
22 22 H 1.09006 * 109.46828 * 79.62175 * 15 14 5
23 23 H 1.08002 * 120.65375 * 180.02562 * 18 14 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 7 3.2231 -1.1444 0.1102
5 6 4.5559 -1.1847 0.1196
6 6 5.2190 -2.4276 0.2396
7 1 6.2751 -2.4992 0.0246
8 6 4.5068 -3.5657 0.6371
9 7 3.2286 -3.4790 0.8978
10 14 5.3832 -5.2077 0.7963
11 1 5.9070 -5.3574 2.1777
12 1 4.4291 -6.3081 0.5067
13 1 6.5103 -5.2628 -0.1692
14 6 5.3085 0.0015 0.0120
15 6 6.8147 -0.0479 0.0223
16 9 7.3203 1.2143 0.3514
17 9 7.2441 -0.9838 0.9694
18 6 4.6501 1.2093 -0.1042
19 6 3.2600 1.2134 -0.1115
20 17 2.3893 2.7084 -0.2562
21 1 2.7351 -4.2674 1.1728
22 1 7.1755 -0.3378 -0.9646
23 1 5.2041 2.1326 -0.1885
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238653228.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:41:22
Heat of formation + Delta-G solvation = -51.106359 kcal
Electronic energy + Delta-G solvation = -16385.711529 eV
Core-core repulsion = 13088.569734 eV
Total energy + Delta-G solvation = -3297.141796 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 258.007 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-48.28799 -46.29669 -38.97289 -35.93475 -35.65086 -34.01771 -32.04541 -30.60636
-26.73296 -25.98832 -22.37707 -21.83897 -18.69659 -17.74168 -16.78632 -16.57591
-16.37906 -15.33283 -15.00915 -13.87840 -13.82156 -13.63160 -13.11008 -12.88631
-12.73136 -12.32480 -12.26258 -11.99035 -11.94511 -11.65430 -11.42902 -11.13835
-10.80048 -10.62989 -10.52677 -10.20008 -9.63644 -8.83874 -8.40830 -8.04416
-7.00549 -5.06451 1.51020 2.27879 2.86780 2.89309 2.93165 3.00629
3.30970 3.58775 3.64178 4.33656 4.40431 4.55010 5.05725 5.18229
5.45768 5.69843 5.73956 6.09038 6.19774 6.62909 6.70419 6.82300
7.12836 7.66840 7.95229 8.10520 8.25660 9.21741 9.77283
Molecular weight = 258.01amu
Principal moments of inertia in cm(-1)
A = 0.018406 B = 0.009682 C = 0.006424
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1520.897921 B = 2891.305125 C = 4357.684885
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.427 5.427
2 C 0.292 3.708
3 C 0.247 3.753
4 N -0.432 5.432
5 C 0.266 3.734
6 C -0.386 4.386
7 H 0.107 0.893
8 C 0.061 3.939
9 N -0.700 5.700
10 Si 0.920 3.080
11 H -0.263 1.263
12 H -0.272 1.272
13 H -0.255 1.255
14 C -0.310 4.310
15 C 0.337 3.663
16 F -0.216 7.216
17 F -0.195 7.195
18 C 0.004 3.996
19 C -0.197 4.197
20 Cl -0.101 7.101
21 H 0.286 0.714
22 H 0.105 0.895
23 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.936 2.043 -1.835 6.540
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.104 5.104
2 C -0.024 4.024
3 C 0.095 3.905
4 N -0.146 5.146
5 C 0.142 3.858
6 C -0.414 4.414
7 H 0.125 0.875
8 C -0.168 4.168
9 N -0.318 5.318
10 Si 0.743 3.257
11 H -0.188 1.188
12 H -0.197 1.197
13 H -0.179 1.179
14 C -0.317 4.317
15 C 0.283 3.717
16 F -0.197 7.197
17 F -0.177 7.177
18 C -0.020 4.020
19 C -0.233 4.233
20 Cl -0.073 7.073
21 H 0.098 0.902
22 H 0.122 0.878
23 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 3.559 1.178 -1.658 4.099
hybrid contribution 1.118 0.254 0.181 1.160
sum 4.677 1.432 -1.476 5.109
Atomic orbital electron populations
1.81030 1.11992 1.08991 1.08432 1.25296 0.92163 0.91802 0.93177
1.16528 0.85777 0.89581 0.98629 1.68879 1.09119 1.21369 1.15196
1.18077 0.86394 0.91657 0.89625 1.20187 0.97360 0.90732 1.33140
0.87469 1.26249 0.94842 1.01899 0.93765 1.69982 1.07604 1.31726
1.22524 0.86080 0.80106 0.79263 0.80282 1.18775 1.19693 1.17892
1.20959 0.93910 0.94972 1.21831 1.19834 0.89951 0.71728 0.90169
1.92902 1.88935 1.43412 1.94467 1.92962 1.90935 1.65258 1.68498
1.20467 0.91274 0.97217 0.93076 1.20879 0.92041 0.85080 1.25253
1.98264 1.76999 1.34649 1.97405 0.90225 0.87773 0.85387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.43 -9.49 18.54 41.84 0.78 -8.71 14
2 C 0.29 6.50 14.57 -22.47 -0.33 6.17 14
3 C 0.25 5.55 6.59 -85.02 -0.56 4.99 14
4 N -0.43 -10.53 7.92 -9.02 -0.07 -10.60 14
5 C 0.27 6.15 6.48 -85.01 -0.55 5.60 14
6 C -0.39 -8.66 7.94 -37.72 -0.30 -8.96 14
7 H 0.11 2.20 5.81 -52.48 -0.30 1.90 14
8 C 0.06 1.35 5.48 -17.35 -0.10 1.25 14
9 N -0.70 -16.52 11.57 55.55 0.64 -15.88 14
10 Si 0.92 16.31 29.56 -169.99 -5.02 11.28 14
11 H -0.26 -4.68 7.11 56.52 0.40 -4.28 14
12 H -0.27 -4.78 7.11 56.52 0.40 -4.38 14
13 H -0.26 -4.38 7.11 56.52 0.40 -3.98 14
14 C -0.31 -6.29 5.79 -103.68 -0.60 -6.89 14
15 C 0.34 5.87 5.13 36.01 0.18 6.06 14
16 F -0.22 -3.68 16.27 2.25 0.04 -3.64 14
17 F -0.20 -3.72 14.56 2.25 0.03 -3.69 14
18 C 0.00 0.08 9.30 -39.36 -0.37 -0.29 14
19 C -0.20 -4.01 6.39 -38.61 -0.25 -4.26 14
20 Cl -0.10 -1.83 28.03 -51.86 -1.45 -3.29 14
21 H 0.29 6.14 8.29 -40.82 -0.34 5.80 14
22 H 0.11 1.49 8.14 -51.93 -0.42 1.06 14
23 H 0.13 2.17 7.43 -52.49 -0.39 1.78 14
LS Contribution 245.13 15.07 3.69 3.69
Total: -1.00 -24.79 245.13 -4.48 -29.27
By element:
Atomic # 1 Polarization: -1.84 SS G_CDS: -0.25 Total: -2.10 kcal
Atomic # 6 Polarization: 6.53 SS G_CDS: -2.86 Total: 3.66 kcal
Atomic # 7 Polarization: -36.54 SS G_CDS: 1.35 Total: -35.19 kcal
Atomic # 9 Polarization: -7.40 SS G_CDS: 0.07 Total: -7.33 kcal
Atomic # 14 Polarization: 16.31 SS G_CDS: -5.02 Total: 11.28 kcal
Atomic # 17 Polarization: -1.83 SS G_CDS: -1.45 Total: -3.29 kcal
Total LS contribution 3.69 Total: 3.69 kcal
Total: -24.79 -4.48 -29.27 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238653228.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.836 kcal
(2) G-P(sol) polarization free energy of solvation -24.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.625 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.481 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.106 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds