Wall clock time and date at job start Mon Mar 30 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 N 1.32673 * 119.93353 * 47.38821 * 3 2 1 5 5 C 1.31610 * 121.90462 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.22574 * 179.97438 * 5 4 3 7 7 F 1.39904 * 109.47431 * 29.99885 * 6 5 4 8 8 F 1.39901 * 109.47334 * 150.00355 * 6 5 4 9 9 C 1.38921 * 121.54609 * 0.25605 * 5 4 3 10 10 C 1.38020 * 119.66146 * 359.46740 * 9 5 4 11 11 Cl 1.73604 * 120.87629 * 180.24547 * 10 9 5 12 12 C 1.41403 * 118.23975 * 0.51134 * 10 9 5 13 13 C 1.40736 * 120.74391 * 179.77081 * 12 10 9 14 14 H 1.07999 * 119.99880 * 314.85004 * 13 12 10 15 15 C 1.40275 * 119.99791 * 134.84361 * 13 12 10 16 16 N 1.30644 * 119.99867 * 154.60905 * 15 13 12 17 17 Si 1.86795 * 120.00176 * 334.61418 * 15 13 12 18 18 H 1.48495 * 109.47363 * 94.65899 * 17 15 13 19 19 H 1.48498 * 109.47067 * 214.66277 * 17 15 13 20 20 H 1.48503 * 109.47068 * 334.65824 * 17 15 13 21 21 H 1.09008 * 109.47202 * 270.00174 * 6 5 4 22 22 H 1.08003 * 120.16577 * 179.72132 * 9 5 4 23 23 H 0.96999 * 120.00441 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 7 3.2304 -0.7775 -0.8462 5 6 4.5458 -0.8072 -0.8798 6 6 5.2363 -1.7144 -1.8654 7 9 4.4342 -1.8652 -3.0017 8 9 6.4649 -1.1549 -2.2327 9 6 5.3125 -0.0262 -0.0242 10 6 4.6894 0.8117 0.8784 11 17 5.6168 1.8061 1.9578 12 6 3.2758 0.8345 0.9045 13 6 2.5862 1.6655 1.8069 14 1 2.8971 1.7161 2.8400 15 6 1.4952 2.4282 1.3645 16 7 0.5682 2.7936 2.2095 17 14 1.3677 2.9214 -0.4326 18 1 0.5276 1.9351 -1.1582 19 1 0.7495 4.2678 -0.5338 20 1 2.7249 2.9535 -1.0346 21 1 5.4036 -2.6890 -1.4067 22 1 6.3907 -0.0714 -0.0680 23 1 -0.1861 3.3213 1.9038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238655087.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:40 Heat of formation + Delta-G solvation = -49.664247 kcal Electronic energy + Delta-G solvation = -16439.686234 eV Core-core repulsion = 13142.606973 eV Total energy + Delta-G solvation = -3297.079261 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.54232 -46.55647 -39.33665 -35.96018 -35.70591 -34.31586 -31.92164 -31.33334 -27.78298 -24.92319 -23.58693 -21.30676 -18.67880 -18.31224 -17.09938 -16.88170 -16.13344 -15.88667 -15.31771 -14.07951 -13.79655 -13.68214 -13.43877 -13.38177 -12.93691 -12.64918 -12.49567 -12.30513 -11.89668 -11.70028 -11.61055 -11.31647 -10.99071 -10.67558 -10.48643 -10.14627 -9.53392 -9.00992 -8.69071 -8.27252 -7.55780 -5.18225 1.44726 1.79939 2.80953 2.84984 2.91184 2.99520 3.51043 3.51827 3.62532 4.04160 4.18709 4.48664 4.70830 4.79368 5.22860 5.37166 5.60886 5.83949 6.12336 6.35798 6.49264 6.58060 7.02396 7.61567 7.71060 7.99700 8.38890 8.59271 9.40160 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.020265 B = 0.010168 C = 0.007646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.352308 B = 2753.152782 C = 3661.245320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.300 3.700 3 C 0.059 3.941 4 N -0.385 5.385 5 C -0.074 4.074 6 C 0.345 3.655 7 F -0.197 7.197 8 F -0.206 7.206 9 C -0.078 4.078 10 C -0.071 4.071 11 Cl -0.070 7.070 12 C 0.073 3.927 13 C -0.394 4.394 14 H 0.119 0.881 15 C 0.089 3.911 16 N -0.740 5.740 17 Si 0.873 3.127 18 H -0.240 1.240 19 H -0.267 1.267 20 H -0.241 1.241 21 H 0.115 0.885 22 H 0.133 0.867 23 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 -2.427 -2.511 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.014 4.014 3 C -0.084 4.084 4 N -0.094 5.094 5 C -0.217 4.217 6 C 0.291 3.709 7 F -0.179 7.179 8 F -0.187 7.187 9 C -0.100 4.100 10 C -0.105 4.105 11 Cl -0.041 7.041 12 C 0.065 3.935 13 C -0.420 4.420 14 H 0.136 0.864 15 C -0.140 4.140 16 N -0.359 5.359 17 Si 0.693 3.307 18 H -0.164 1.164 19 H -0.192 1.192 20 H -0.164 1.164 21 H 0.132 0.868 22 H 0.151 0.849 23 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.814 -2.707 -2.880 7.030 hybrid contribution 0.863 1.023 -0.004 1.338 sum 6.677 -1.684 -2.884 7.466 Atomic orbital electron populations 1.81059 1.11851 1.09855 1.09311 1.24480 0.91555 0.92731 0.92614 1.16144 0.85443 1.02480 1.04292 1.66314 1.08775 1.16669 1.17654 1.20354 0.89567 1.07447 1.04355 1.19811 0.74233 0.95873 0.81010 1.92978 1.74222 1.96606 1.54055 1.92953 1.45031 1.88039 1.92673 1.21314 1.00444 0.94061 0.94134 1.21075 0.91265 1.00100 0.98010 1.98289 1.72437 1.69246 1.64175 1.18016 0.90075 0.93313 0.92122 1.19635 1.06920 1.17267 0.98158 0.86380 1.26292 0.92486 0.94243 1.00966 1.69582 1.05469 1.22323 1.38542 0.86889 0.82341 0.80012 0.81419 1.16365 1.19207 1.16368 0.86773 0.84930 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.78 17.35 41.84 0.73 -10.06 14 2 C 0.30 7.17 10.52 -22.47 -0.24 6.93 14 3 C 0.06 1.36 5.62 -84.17 -0.47 0.88 14 4 N -0.38 -8.32 9.83 -6.69 -0.07 -8.38 14 5 C -0.07 -1.38 6.59 -82.43 -0.54 -1.92 14 6 C 0.35 5.30 5.71 36.01 0.21 5.51 14 7 F -0.20 -3.44 17.04 2.25 0.04 -3.40 14 8 F -0.21 -3.10 16.44 2.25 0.04 -3.06 14 9 C -0.08 -1.40 9.22 -39.41 -0.36 -1.76 14 10 C -0.07 -1.40 6.42 -38.46 -0.25 -1.65 14 11 Cl -0.07 -1.25 28.15 -51.86 -1.46 -2.71 14 12 C 0.07 1.63 4.60 -106.34 -0.49 1.14 14 13 C -0.39 -9.19 8.37 -37.87 -0.32 -9.51 14 14 H 0.12 2.81 7.96 -52.49 -0.42 2.39 14 15 C 0.09 2.08 4.44 -17.29 -0.08 2.01 14 16 N -0.74 -17.62 13.92 55.56 0.77 -16.85 14 17 Si 0.87 19.19 24.81 -169.99 -4.22 14.97 14 18 H -0.24 -5.52 5.46 56.52 0.31 -5.21 14 19 H -0.27 -5.54 7.11 56.52 0.40 -5.13 14 20 H -0.24 -5.33 7.11 56.52 0.40 -4.93 14 21 H 0.12 1.32 8.14 -51.92 -0.42 0.90 14 22 H 0.13 1.99 7.58 -52.48 -0.40 1.59 14 23 H 0.30 6.55 8.29 -40.82 -0.34 6.21 14 LS Contribution 240.67 15.07 3.63 3.63 Total: -1.00 -24.88 240.67 -3.55 -28.43 By element: Atomic # 1 Polarization: -3.73 SS G_CDS: -0.47 Total: -4.19 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.54 Total: 1.63 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 1.43 Total: -35.29 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.08 Total: -6.46 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.22 Total: 14.97 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.46 Total: -2.71 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -24.88 -3.55 -28.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238655087.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.237 kcal (2) G-P(sol) polarization free energy of solvation -24.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds