Wall clock time and date at job start Mon Mar 30 2020 06:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 N 1.32726 * 119.99010 * 101.51797 * 3 2 1 5 5 C 1.31704 * 121.70245 * 179.97438 * 4 3 2 6 6 Cl 1.73595 * 119.25166 * 179.97438 * 5 4 3 7 7 C 1.39223 * 121.49287 * 0.02562 * 5 4 3 8 8 C 1.36734 * 119.80557 * 359.97438 * 7 5 4 9 9 C 1.50705 * 120.79442 * 179.97438 * 8 7 5 10 10 F 1.39895 * 109.47289 * 120.02235 * 9 8 7 11 11 F 1.39906 * 109.46829 * 240.02214 * 9 8 7 12 12 C 1.41262 * 118.40836 * 0.02562 * 8 7 5 13 13 C 1.40758 * 120.71296 * 180.02562 * 12 8 7 14 14 H 1.08002 * 120.00180 * 316.45778 * 13 12 8 15 15 C 1.40257 * 119.99967 * 136.45592 * 13 12 8 16 16 N 1.30659 * 119.99920 * 339.36998 * 15 13 12 17 17 Si 1.86795 * 120.00219 * 159.36896 * 15 13 12 18 18 H 1.48499 * 109.47136 * 59.99969 * 17 15 13 19 19 H 1.48502 * 109.47428 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47334 * 300.00591 * 17 15 13 21 21 H 1.08005 * 120.09609 * 179.97438 * 7 5 4 22 22 H 1.08997 * 109.47390 * 0.02562 * 9 8 7 23 23 H 0.96998 * 119.99728 * 184.52848 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 7 3.2314 0.2305 -1.1264 5 6 4.5479 0.2394 -1.1649 6 17 5.3503 0.5464 -2.6733 7 6 5.3104 0.0072 -0.0234 8 6 4.6900 -0.2364 1.1705 9 6 5.4935 -0.4911 2.4197 10 9 5.1839 0.4786 3.3793 11 9 5.1846 -1.7598 2.9222 12 6 3.2778 -0.2445 1.2046 13 6 2.5892 -0.4894 2.4076 14 1 2.9168 -1.2803 3.0661 15 6 1.4775 0.2937 2.7513 16 7 1.3126 1.4693 2.2053 17 14 0.2327 -0.3439 3.9894 18 1 0.9094 -0.5952 5.2871 19 1 -0.8403 0.6655 4.1774 20 1 -0.3611 -1.6092 3.4877 21 1 6.3888 0.0194 -0.0808 22 1 6.5566 -0.4426 2.1842 23 1 0.5808 2.0382 2.4908 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238661162.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:55 Heat of formation + Delta-G solvation = -74.740343 kcal Electronic energy + Delta-G solvation = -16659.785185 eV Core-core repulsion = 13361.618543 eV Total energy + Delta-G solvation = -3298.166642 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 258.007 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.60482 -47.60282 -40.81835 -37.62117 -37.00697 -35.90216 -34.11985 -32.20895 -28.40794 -27.13031 -24.93452 -23.01317 -20.09801 -19.58649 -18.52088 -17.85579 -17.38780 -17.21240 -16.45618 -16.04059 -15.49232 -15.46094 -14.54088 -14.34778 -14.00153 -13.96334 -13.83816 -13.70448 -13.51694 -13.19659 -13.04306 -12.75601 -12.23011 -12.11326 -11.99586 -11.94009 -11.24832 -10.72806 -10.47154 -9.53741 -9.05414 -6.82499 -0.02758 0.41788 1.10070 1.25001 1.34924 1.37098 1.94719 1.98976 2.07380 2.56093 3.07412 3.16846 3.30151 3.52802 4.01888 4.25780 4.40197 4.44441 4.61440 4.85534 5.02436 5.17858 5.49072 5.98861 6.21256 6.43637 6.80071 7.03514 7.90954 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.010064 C = 0.007264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.399553 B = 2781.454815 C = 3853.842537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.334 3.666 3 C 0.068 3.932 4 N -0.434 5.434 5 C 0.052 3.948 6 Cl -0.045 7.045 7 C -0.043 4.043 8 C -0.219 4.219 9 C 0.334 3.666 10 F -0.211 7.211 11 F -0.212 7.212 12 C 0.116 3.884 13 C -0.455 4.455 14 H 0.109 0.891 15 C 0.051 3.949 16 N -0.783 5.783 17 Si 0.955 3.045 18 H -0.239 1.239 19 H -0.270 1.270 20 H -0.264 1.264 21 H 0.181 0.819 22 H 0.167 0.833 23 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.209 -2.165 1.094 10.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C 0.020 3.980 3 C -0.072 4.072 4 N -0.146 5.146 5 C -0.117 4.117 6 Cl -0.017 7.017 7 C -0.064 4.064 8 C -0.228 4.228 9 C 0.281 3.719 10 F -0.193 7.193 11 F -0.194 7.194 12 C 0.109 3.891 13 C -0.482 4.482 14 H 0.126 0.874 15 C -0.171 4.171 16 N -0.405 5.405 17 Si 0.775 3.225 18 H -0.162 1.162 19 H -0.195 1.195 20 H -0.188 1.188 21 H 0.198 0.802 22 H 0.184 0.816 23 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.887 -1.778 0.198 8.087 hybrid contribution -0.170 0.029 0.939 0.955 sum 7.717 -1.749 1.137 7.994 Atomic orbital electron populations 1.80887 1.12654 1.12476 1.11002 1.24826 0.91894 0.91158 0.90072 1.16250 0.85138 1.16787 0.89063 1.66070 1.10390 1.08598 1.29508 1.20874 0.88134 1.14199 0.88486 1.98305 1.76407 1.94838 1.32113 1.21367 1.02144 0.93786 0.89129 1.20796 0.93766 1.12037 0.96166 1.20457 0.99700 0.70926 0.80803 1.92971 1.95422 1.64078 1.66780 1.92938 1.95356 1.42189 1.88888 1.18118 0.91809 0.86812 0.92392 1.19867 1.09256 1.15022 1.04044 0.87358 1.26645 0.98021 0.93831 0.98610 1.69615 1.27852 1.07290 1.35754 0.85581 0.77880 0.79560 0.79478 1.16210 1.19459 1.18808 0.80163 0.81613 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -25.29 18.48 19.01 0.35 -24.94 14 2 C 0.33 17.08 11.78 88.33 1.04 18.13 14 3 C 0.07 3.30 6.34 41.17 0.26 3.57 14 4 N -0.43 -19.70 10.24 -177.71 -1.82 -21.52 14 5 C 0.05 1.97 7.28 84.95 0.62 2.59 14 6 Cl -0.04 -1.38 29.09 -2.72 -0.08 -1.45 14 7 C -0.04 -1.38 9.44 22.15 0.21 -1.17 14 8 C -0.22 -8.12 5.41 -19.47 -0.11 -8.22 14 9 C 0.33 10.25 5.06 71.24 0.36 10.61 14 10 F -0.21 -7.72 16.67 44.97 0.75 -6.97 14 11 F -0.21 -7.16 15.92 44.97 0.72 -6.44 14 12 C 0.12 5.34 5.29 -21.00 -0.11 5.23 14 13 C -0.45 -21.37 7.29 23.38 0.17 -21.20 14 14 H 0.11 4.92 6.73 -2.91 -0.02 4.90 14 15 C 0.05 2.42 4.04 85.36 0.35 2.76 14 16 N -0.78 -38.87 11.25 21.88 0.25 -38.62 14 17 Si 0.95 37.66 29.61 68.60 2.03 39.70 14 18 H -0.24 -8.65 7.11 99.48 0.71 -7.94 14 19 H -0.27 -10.48 7.11 99.48 0.71 -9.77 14 20 H -0.26 -10.67 7.11 99.48 0.71 -9.96 14 21 H 0.18 3.79 7.97 -2.91 -0.02 3.76 14 22 H 0.17 3.05 7.91 -2.39 -0.02 3.04 14 23 H 0.30 13.97 8.30 -92.71 -0.77 13.20 14 Total: -1.00 -57.02 245.45 6.27 -50.75 By element: Atomic # 1 Polarization: -4.06 SS G_CDS: 1.29 Total: -2.77 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 2.79 Total: 12.29 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.22 Total: -85.09 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 1.47 Total: -13.41 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.70 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.45 kcal Total: -57.02 6.27 -50.75 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238661162.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.991 kcal (2) G-P(sol) polarization free energy of solvation -57.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds