Wall clock time and date at job start Mon Mar 30 2020 06:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86802 * 120.00524 * 2 1 4 4 H 1.48499 * 109.47002 * 274.65110 * 3 2 1 5 5 H 1.48506 * 109.46644 * 34.64273 * 3 2 1 6 6 H 1.48491 * 109.47098 * 154.64417 * 3 2 1 7 7 C 1.39892 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00212 * 162.64001 * 7 2 1 9 9 C 1.40944 * 120.00309 * 342.63180 * 7 2 1 10 10 C 1.40773 * 120.29946 * 334.61037 * 9 7 2 11 11 C 1.36377 * 119.96548 * 179.97438 * 10 9 7 12 12 C 1.39084 * 120.61002 * 359.97438 * 11 10 9 13 13 Br 1.89105 * 119.68848 * 179.97438 * 12 11 10 14 14 C 1.38179 * 120.62371 * 0.02562 * 12 11 10 15 15 C 1.38857 * 120.00514 * 359.97438 * 14 12 11 16 16 S 1.76196 * 120.29796 * 180.28018 * 15 14 12 17 17 H 0.96999 * 119.99409 * 359.97438 * 1 2 3 18 18 H 1.07998 * 120.01686 * 359.97438 * 10 9 7 19 19 H 1.07999 * 119.69145 * 180.02562 * 11 10 9 20 20 H 1.07997 * 119.99433 * 179.97438 * 14 12 11 21 21 H 1.40998 * 99.99650 * 269.71863 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.3925 2.1031 -1.3955 5 1 1.4932 2.6223 0.7959 6 1 3.5863 1.4136 0.5995 7 6 2.0085 -1.2115 -0.0005 8 1 3.0516 -1.2328 -0.2796 9 6 1.3520 -2.4045 0.3633 10 6 0.2266 -2.3666 1.2082 11 6 -0.4038 -3.5250 1.5555 12 6 0.0541 -4.7499 1.0818 13 35 -0.8393 -6.3402 1.5805 14 6 1.1564 -4.8159 0.2512 15 6 1.8178 -3.6523 -0.1188 16 16 3.2196 -3.7269 -1.1835 17 1 -0.4849 0.8401 0.0004 18 1 -0.1374 -1.4207 1.5812 19 1 -1.2670 -3.4908 2.2036 20 1 1.5035 -5.7726 -0.1104 21 1 4.2475 -3.8525 -0.2265 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238663581.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:11 Heat of formation + Delta-G solvation = 10.315075 kcal Electronic energy + Delta-G solvation = -9808.008489 eV Core-core repulsion = 7820.650077 eV Total energy + Delta-G solvation = -1987.358413 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 257.941 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.67514 -34.10433 -31.00860 -29.76576 -28.78370 -25.13085 -21.54024 -20.90080 -17.70889 -16.37809 -15.60442 -14.66643 -13.99203 -13.88903 -12.89463 -12.61101 -12.06482 -11.71829 -11.34390 -11.23884 -10.76952 -10.47429 -10.13677 -9.88531 -9.58124 -9.41330 -9.17288 -7.79663 -7.60465 -7.13391 -6.98768 -4.72364 2.23010 2.50262 2.76181 2.92646 2.94827 3.01519 3.08299 3.70776 3.78534 4.27462 5.30060 6.00311 6.17682 6.68550 6.79283 6.90402 7.15520 7.23075 7.49837 7.66547 7.86279 8.24432 8.48656 8.53829 9.79486 Molecular weight = 257.94amu Principal moments of inertia in cm(-1) A = 0.035506 B = 0.007345 C = 0.006192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.404258 B = 3811.266479 C = 4520.983842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.419 4.419 8 H 0.098 0.902 9 C 0.145 3.855 10 C -0.154 4.154 11 C -0.061 4.061 12 C -0.214 4.214 13 Br -0.115 7.115 14 C -0.002 4.002 15 C -0.228 4.228 16 S -0.159 6.159 17 H 0.289 0.711 18 H 0.128 0.872 19 H 0.101 0.899 20 H 0.108 0.892 21 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -3.855 2.369 4.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.149 4.149 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.447 4.447 8 H 0.116 0.884 9 C 0.138 3.862 10 C -0.176 4.176 11 C -0.082 4.082 12 C -0.295 4.295 13 Br -0.031 7.031 14 C -0.024 4.024 15 C -0.342 4.342 16 S -0.002 6.002 17 H 0.100 0.900 18 H 0.145 0.855 19 H 0.119 0.881 20 H 0.126 0.874 21 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -0.405 -4.291 1.773 4.660 hybrid contribution 0.195 1.033 1.166 1.570 sum -0.211 -3.258 2.939 4.393 Atomic orbital electron populations 1.69852 1.07904 1.30351 1.30939 1.26153 0.94852 1.02130 0.91759 0.86135 0.80726 0.79528 0.79638 1.18899 1.19727 1.18036 1.19940 0.99028 0.90503 1.35192 0.88438 1.17838 0.90009 0.91388 0.86935 1.21078 0.98757 0.96829 1.00890 1.20412 0.98143 0.91397 0.98224 1.20760 1.04359 0.89339 1.15026 1.96353 1.79044 1.35182 1.92571 1.20831 0.92272 0.96680 0.92655 1.20840 1.04522 0.95345 1.13525 1.86150 1.02976 1.97590 1.13493 0.90025 0.85477 0.88136 0.87413 0.97809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.07 10.99 55.55 0.61 -17.46 14 2 C 0.07 1.67 5.14 -17.33 -0.09 1.58 14 3 Si 0.92 17.12 29.59 -169.99 -5.03 12.09 14 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 5 H -0.27 -4.95 7.11 56.52 0.40 -4.54 14 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 14 7 C -0.42 -10.27 8.46 -37.94 -0.32 -10.59 14 8 H 0.10 2.34 7.03 -52.48 -0.37 1.97 14 9 C 0.14 3.62 5.58 -106.61 -0.59 3.03 14 10 C -0.15 -3.72 8.63 -39.29 -0.34 -4.06 14 11 C -0.06 -1.38 9.70 -39.94 -0.39 -1.76 14 12 C -0.21 -4.68 6.24 -39.29 -0.25 -4.92 14 13 Br -0.11 -2.12 33.68 -68.01 -2.29 -4.41 14 14 C 0.00 -0.04 9.52 -39.37 -0.37 -0.41 14 15 C -0.23 -5.41 6.19 -38.05 -0.24 -5.65 14 16 S -0.16 -3.39 24.33 -107.50 -2.62 -6.00 14 17 H 0.29 6.09 8.30 -40.82 -0.34 5.75 14 18 H 0.13 3.09 6.20 -52.49 -0.33 2.77 14 19 H 0.10 2.05 8.06 -52.49 -0.42 1.62 14 20 H 0.11 2.23 8.06 -52.49 -0.42 1.80 14 21 H 0.06 1.14 9.55 96.90 0.93 2.06 14 LS Contribution 226.55 15.07 3.41 3.41 Total: -1.00 -24.37 226.55 -8.25 -32.62 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 0.25 Total: 2.53 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -2.59 Total: -22.79 kcal Atomic # 7 Polarization: -18.07 SS G_CDS: 0.61 Total: -17.46 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.62 Total: -6.00 kcal Atomic # 35 Polarization: -2.12 SS G_CDS: -2.29 Total: -4.41 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -24.37 -8.25 -32.62 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238663581.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.936 kcal (2) G-P(sol) polarization free energy of solvation -24.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds