Wall clock time and date at job start Mon Mar 30 2020 06:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86798 * 119.99995 * 2 1 4 4 H 1.48502 * 109.46794 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46951 * 299.99762 * 3 2 1 6 6 H 1.48496 * 109.47026 * 60.00292 * 3 2 1 7 7 C 1.39892 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 163.66910 * 7 2 1 9 9 C 1.40959 * 120.00359 * 343.39355 * 7 2 1 10 10 C 1.40738 * 120.30796 * 334.01749 * 9 7 2 11 11 C 1.36485 * 119.94801 * 179.76562 * 10 9 7 12 12 Br 1.89102 * 119.69425 * 180.23371 * 11 10 9 13 13 C 1.39062 * 120.60980 * 0.51599 * 11 10 9 14 14 C 1.38036 * 120.63321 * 359.73936 * 13 11 10 15 15 C 1.38928 * 120.02556 * 0.02562 * 14 13 11 16 16 S 1.76203 * 120.29931 * 179.97438 * 15 14 13 17 17 H 0.97002 * 119.99669 * 359.97438 * 1 2 3 18 18 H 1.07997 * 120.02888 * 359.97438 * 10 9 7 19 19 H 1.07997 * 119.67993 * 179.71602 * 13 11 10 20 20 H 1.07998 * 119.99134 * 179.97438 * 14 13 11 21 21 H 1.41004 * 99.99565 * 270.02083 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8843 2.3963 1.2125 7 6 2.0084 -1.2116 0.0005 8 1 3.0557 -1.2306 -0.2625 9 6 1.3476 -2.4067 0.3499 10 6 0.2203 -2.3750 1.1919 11 6 -0.4167 -3.5361 1.5216 12 35 -1.9347 -3.4846 2.6481 13 6 0.0438 -4.7574 1.0416 14 6 1.1503 -4.8175 0.2185 15 6 1.8159 -3.6513 -0.1378 16 16 3.2295 -3.7198 -1.1875 17 1 -0.4850 0.8401 0.0004 18 1 -0.1424 -1.4323 1.5741 19 1 -0.4690 -5.6674 1.3158 20 1 1.4992 -5.7716 -0.1480 21 1 4.2461 -3.8580 -0.2203 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238664650.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:10 Heat of formation + Delta-G solvation = 11.982879 kcal Electronic energy + Delta-G solvation = -9857.995780 eV Core-core repulsion = 7870.709688 eV Total energy + Delta-G solvation = -1987.286091 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 257.941 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.69870 -34.02133 -31.26404 -29.94299 -28.16053 -25.58976 -21.41166 -20.86386 -17.63202 -16.48001 -15.50035 -14.70527 -13.99124 -13.86406 -12.88198 -12.61160 -12.08047 -11.67659 -11.29288 -11.22485 -10.76212 -10.49482 -10.16114 -9.89147 -9.52333 -9.39382 -9.28237 -7.76493 -7.59183 -7.07679 -6.96870 -4.67441 2.09543 2.58962 2.63292 2.96398 2.99972 3.02915 3.05155 3.75419 3.77634 4.31458 5.28746 6.01725 6.25425 6.72047 6.78379 6.95298 7.07114 7.35795 7.55214 7.59683 7.84407 8.23373 8.51464 8.55717 9.86654 Molecular weight = 257.94amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.010232 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.407845 B = 2735.911683 C = 3980.729230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.424 4.424 8 H 0.098 0.902 9 C 0.141 3.859 10 C -0.126 4.126 11 C -0.039 4.039 12 Br -0.106 7.106 13 C -0.236 4.236 14 C -0.030 4.030 15 C -0.224 4.224 16 S -0.163 6.163 17 H 0.288 0.712 18 H 0.133 0.867 19 H 0.103 0.897 20 H 0.107 0.893 21 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 -2.072 3.302 4.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.452 4.452 8 H 0.116 0.884 9 C 0.134 3.866 10 C -0.149 4.149 11 C -0.118 4.118 12 Br -0.022 7.022 13 C -0.258 4.258 14 C -0.051 4.051 15 C -0.338 4.338 16 S -0.006 6.006 17 H 0.099 0.901 18 H 0.151 0.849 19 H 0.121 0.879 20 H 0.125 0.875 21 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -1.622 -1.903 2.951 3.868 hybrid contribution 0.314 0.662 1.040 1.272 sum -1.308 -1.241 3.990 4.379 Atomic orbital electron populations 1.69838 1.07809 1.30225 1.31686 1.26120 0.94856 1.02039 0.91874 0.86111 0.81116 0.79971 0.78892 1.17939 1.19459 1.19455 1.19878 0.98706 0.90266 1.36332 0.88394 1.17704 0.89816 0.91749 0.87359 1.21156 0.97810 0.96110 0.99783 1.21255 0.93786 0.96951 0.99792 1.96442 1.40330 1.99344 1.66070 1.20180 1.02161 0.94994 1.08507 1.20873 0.93725 0.96213 0.94326 1.21009 1.03921 0.95852 1.13009 1.86138 1.03205 1.97535 1.13705 0.90094 0.84948 0.87894 0.87490 0.97797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.64 10.98 55.55 0.61 -18.03 14 2 C 0.07 1.69 5.15 -17.33 -0.09 1.60 14 3 Si 0.92 17.53 29.59 -169.99 -5.03 12.50 14 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 14 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 14 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 14 7 C -0.42 -10.53 8.45 -37.93 -0.32 -10.85 14 8 H 0.10 2.38 7.04 -52.49 -0.37 2.01 14 9 C 0.14 3.57 5.58 -106.62 -0.59 2.97 14 10 C -0.13 -3.11 8.33 -39.27 -0.33 -3.44 14 11 C -0.04 -0.88 6.18 -39.91 -0.25 -1.13 14 12 Br -0.11 -2.05 33.67 -68.01 -2.29 -4.34 14 13 C -0.24 -5.11 9.77 -39.35 -0.38 -5.49 14 14 C -0.03 -0.65 9.79 -39.40 -0.39 -1.03 14 15 C -0.22 -5.31 6.19 -38.03 -0.24 -5.54 14 16 S -0.16 -3.45 24.34 -107.50 -2.62 -6.07 14 17 H 0.29 6.26 8.30 -40.82 -0.34 5.92 14 18 H 0.13 3.36 6.22 -52.49 -0.33 3.03 14 19 H 0.10 2.01 8.06 -52.49 -0.42 1.58 14 20 H 0.11 2.06 8.06 -52.49 -0.42 1.63 14 21 H 0.06 1.13 9.55 96.90 0.93 2.06 14 LS Contribution 226.56 15.07 3.41 3.41 Total: -1.00 -24.79 226.56 -8.25 -33.04 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 0.25 Total: 2.41 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.58 Total: -22.91 kcal Atomic # 7 Polarization: -18.64 SS G_CDS: 0.61 Total: -18.03 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.62 Total: -6.07 kcal Atomic # 35 Polarization: -2.05 SS G_CDS: -2.29 Total: -4.34 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -24.79 -8.25 -33.04 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238664650.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.023 kcal (2) G-P(sol) polarization free energy of solvation -24.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds