Wall clock time and date at job start Mon Mar 30 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81394 * 109.47122 * 2 1 4 4 C 1.81394 * 103.00171 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.03885 * 56.02176 * 4 3 2 6 6 C 1.53825 * 108.99277 * 297.07943 * 4 3 2 7 7 C 1.54171 * 111.97077 * 198.52687 * 6 4 3 8 8 C 1.50751 * 112.61298 * 318.48785 * 7 6 4 9 9 C 1.54433 * 109.02357 * 93.01842 * 8 7 6 10 10 N 1.39782 * 111.76631 * 282.58749 * 9 8 7 11 11 C 1.46898 * 110.99872 * 189.12904 * 10 9 8 12 12 H 1.09004 * 109.46960 * 49.11028 * 11 10 9 13 13 C 1.53000 * 109.47613 * 289.10560 * 11 10 9 14 14 C 1.50701 * 109.46922 * 169.10548 * 11 10 9 15 15 H 1.07997 * 120.00405 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00158 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99862 * 0.02562 * 16 14 11 18 18 Si 1.86792 * 120.00099 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47368 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47054 * 120.00314 * 18 16 14 21 21 H 1.48509 * 109.47351 * 240.00141 * 18 16 14 22 22 C 1.47641 * 114.75890 * 62.28252 * 10 9 8 23 23 H 1.09005 * 109.47369 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47354 * 300.00052 * 1 2 3 25 25 H 1.08995 * 109.47362 * 60.00344 * 1 2 3 26 26 H 1.08996 * 109.47156 * 239.99247 * 2 1 3 27 27 H 1.09005 * 109.46877 * 119.99828 * 2 1 3 28 28 H 1.09001 * 108.98060 * 77.88985 * 6 4 3 29 29 H 1.09000 * 108.98254 * 319.17081 * 6 4 3 30 30 H 1.08999 * 108.85531 * 197.67835 * 7 6 4 31 31 H 1.08999 * 108.85272 * 79.29521 * 7 6 4 32 32 H 1.08998 * 109.54660 * 212.87361 * 8 7 6 33 33 H 1.08990 * 109.54780 * 333.05953 * 8 7 6 34 34 H 1.09003 * 109.02095 * 43.17713 * 9 8 7 35 35 H 1.09001 * 109.02244 * 161.99936 * 9 8 7 36 36 H 1.09000 * 109.46899 * 183.53352 * 13 11 10 37 37 H 1.08999 * 109.47325 * 303.53780 * 13 11 10 38 38 H 1.09002 * 109.46546 * 63.53890 * 13 11 10 39 39 H 0.96994 * 119.99908 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.74507 * 36.83336 * 22 10 9 41 41 H 1.09001 * 109.74451 * 157.50666 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9370 1.5058 0.0008 5 1 4.2258 0.8934 -0.8534 6 6 4.3593 0.7917 1.2961 7 6 5.8596 0.9809 1.5963 8 6 6.7170 0.8635 0.3620 9 6 6.9314 2.2704 -0.2378 10 7 5.8065 2.7111 -0.9408 11 6 6.0990 3.9452 -1.6819 12 1 7.0220 3.8190 -2.2479 13 6 6.2589 5.1056 -0.6975 14 6 4.9655 4.2428 -2.6293 15 1 4.1129 3.5816 -2.6759 16 6 5.0168 5.3594 -3.4366 17 7 6.0553 6.1644 -3.3803 18 14 3.6122 5.7279 -4.6115 19 1 2.5715 4.6762 -4.4842 20 1 3.0227 7.0497 -4.2791 21 1 4.1253 5.7511 -6.0049 22 6 4.5862 2.8614 -0.1234 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.1489 -0.2734 1.1986 29 1 3.7782 1.1916 2.1271 30 1 6.1729 0.2248 2.3161 31 1 6.0091 1.9668 2.0366 32 1 7.6811 0.4297 0.6275 33 1 6.2192 0.2261 -0.3686 34 1 7.1435 2.9720 0.5691 35 1 7.7849 2.2416 -0.9151 36 1 6.4136 6.0322 -1.2503 37 1 5.3593 5.1918 -0.0882 38 1 7.1179 4.9193 -0.0529 39 1 6.0917 6.9497 -3.9485 40 1 4.8495 3.2357 0.8659 41 1 3.9007 3.5557 -0.6094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246664085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:49 Heat of formation + Delta-G solvation = -10.156286 kcal Electronic energy + Delta-G solvation = -18324.128110 eV Core-core repulsion = 15750.651554 eV Total energy + Delta-G solvation = -2573.476556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.98015 -34.96354 -32.76102 -32.42593 -31.69479 -28.84645 -25.44673 -25.27234 -24.77564 -23.17311 -21.34666 -19.51283 -19.03020 -16.27798 -16.13180 -15.47287 -14.87178 -14.80145 -14.53502 -14.43047 -13.89012 -13.47853 -13.13550 -12.55124 -12.42336 -12.19924 -12.04067 -11.82945 -11.55277 -11.40089 -11.04983 -10.79621 -10.77696 -10.65225 -10.51145 -10.32165 -10.15657 -10.12148 -9.85487 -9.66070 -9.36982 -8.84732 -8.33795 -7.32094 -7.06480 -5.96823 -3.99965 1.98291 2.91481 3.34570 3.42543 3.49580 4.47156 4.81002 4.96201 4.98626 5.03607 5.20825 5.34971 5.38995 5.40394 5.47052 5.54633 5.70351 5.80766 5.84777 5.92953 5.97523 6.00052 6.06785 6.23298 6.26372 6.36893 6.49267 6.56398 6.66280 6.72602 6.86452 6.90354 7.16740 7.56931 7.74988 7.93668 8.22599 8.41680 8.76836 9.07455 9.65481 11.10083 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.008054 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.425795 B = 3475.858522 C = 4865.446065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 S -0.267 6.267 4 C -0.038 4.038 5 H 0.097 0.903 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.121 4.121 9 C 0.078 3.922 10 N -0.548 5.548 11 C 0.217 3.783 12 H 0.039 0.961 13 C -0.171 4.171 14 C -0.497 4.497 15 H 0.066 0.934 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.094 3.906 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.011 0.989 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.027 0.973 38 H 0.006 0.994 39 H 0.259 0.741 40 H 0.033 0.967 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 -11.337 8.963 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.241 4.241 3 S -0.039 6.039 4 C -0.167 4.167 5 H 0.116 0.884 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.159 4.159 9 C -0.052 4.052 10 N -0.272 5.272 11 C 0.112 3.888 12 H 0.057 0.943 13 C -0.230 4.230 14 C -0.535 4.535 15 H 0.084 0.916 16 C -0.143 4.143 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.195 1.195 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.035 4.035 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.029 0.971 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.046 0.954 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.762 -10.591 8.548 14.419 hybrid contribution 0.258 -0.258 -0.061 0.370 sum -4.504 -10.849 8.487 14.492 Atomic orbital electron populations 1.21494 0.92786 1.01911 1.03092 1.23238 0.99719 0.96784 1.04343 1.87036 1.07625 1.11377 1.97891 1.23189 0.90641 1.02371 1.00546 0.88426 1.22300 0.96487 0.99409 0.96888 1.21389 0.94216 1.01623 0.98030 1.21543 0.98902 0.98328 0.97108 1.20880 0.94148 0.93883 0.96307 1.58959 1.02935 1.36005 1.29289 1.19298 0.97432 0.81692 0.90401 0.94305 1.22409 0.96617 1.05199 0.98815 1.21209 1.04592 1.07973 1.19774 0.91605 1.24915 0.95966 0.96152 0.97224 1.69893 1.29227 1.14653 1.39791 0.86512 0.82552 0.78186 0.80688 1.19463 1.21220 1.21184 1.21348 0.93094 0.93193 0.95822 0.91712 0.91949 0.91704 0.90452 0.90691 0.92815 0.91435 0.92726 0.92185 0.92263 0.91239 0.97092 0.91888 0.89152 0.95410 0.97453 0.93136 0.94890 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.92 37.16 0.37 -1.04 16 2 C -0.09 -1.13 6.39 37.16 0.24 -0.89 16 3 S -0.27 -4.34 20.72 -107.50 -2.23 -6.56 16 4 C -0.04 -0.63 2.22 -27.40 -0.06 -0.69 16 5 H 0.10 1.74 7.27 -51.91 -0.38 1.37 16 6 C -0.11 -1.51 4.84 -25.69 -0.12 -1.64 16 7 C -0.11 -1.51 5.31 -27.25 -0.14 -1.66 16 8 C -0.12 -1.75 5.64 -27.11 -0.15 -1.90 16 9 C 0.08 1.42 4.62 -6.74 -0.03 1.38 16 10 N -0.55 -11.49 3.88 -233.37 -0.91 -12.40 16 11 C 0.22 5.41 2.26 -68.87 -0.16 5.25 16 12 H 0.04 1.06 7.82 -51.93 -0.41 0.66 16 13 C -0.17 -4.15 8.52 37.16 0.32 -3.83 16 14 C -0.50 -13.54 7.54 -34.44 -0.26 -13.80 16 15 H 0.07 1.83 7.20 -52.49 -0.38 1.45 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 17 N -0.90 -25.55 11.30 55.43 0.63 -24.92 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.09 1.84 3.21 -4.51 -0.01 1.83 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.83 7.57 -51.92 -0.39 0.43 16 28 H 0.05 0.66 7.75 -51.93 -0.40 0.25 16 29 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.05 7.11 -51.93 -0.37 0.68 16 34 H 0.01 0.21 6.35 -51.93 -0.33 -0.12 16 35 H 0.06 1.16 7.79 -51.93 -0.40 0.76 16 36 H 0.09 2.43 5.99 -51.93 -0.31 2.12 16 37 H 0.03 0.65 6.81 -51.93 -0.35 0.29 16 38 H 0.01 0.15 7.03 -51.93 -0.36 -0.22 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.03 0.64 6.49 -51.93 -0.34 0.30 16 41 H 0.10 2.25 5.75 -51.93 -0.30 1.95 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -27.74 315.16 -10.04 -37.79 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.15 Total: 0.20 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.12 Total: -15.49 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.28 Total: -37.32 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -2.23 Total: -6.56 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.74 -10.04 -37.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246664085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.631 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds