Wall clock time and date at job start Mon Mar 30 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81394 * 109.47122 * 2 1 4 4 C 1.81394 * 103.00171 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.03885 * 56.02176 * 4 3 2 6 6 C 1.53825 * 108.99277 * 297.07943 * 4 3 2 7 7 C 1.54171 * 111.97077 * 198.52687 * 6 4 3 8 8 C 1.50751 * 112.61298 * 318.48785 * 7 6 4 9 9 C 1.54433 * 109.02357 * 93.01842 * 8 7 6 10 10 N 1.39782 * 111.76631 * 282.58749 * 9 8 7 11 11 C 1.46898 * 110.99872 * 189.12904 * 10 9 8 12 12 H 1.09004 * 109.46960 * 49.11028 * 11 10 9 13 13 C 1.53000 * 109.47613 * 289.10560 * 11 10 9 14 14 C 1.50701 * 109.46922 * 169.10548 * 11 10 9 15 15 H 1.07997 * 120.00405 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00158 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99862 * 0.02562 * 16 14 11 18 18 Si 1.86792 * 120.00099 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47368 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47054 * 120.00314 * 18 16 14 21 21 H 1.48509 * 109.47351 * 240.00141 * 18 16 14 22 22 C 1.47641 * 114.75890 * 62.28252 * 10 9 8 23 23 H 1.09005 * 109.47369 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47354 * 300.00052 * 1 2 3 25 25 H 1.08995 * 109.47362 * 60.00344 * 1 2 3 26 26 H 1.08996 * 109.47156 * 239.99247 * 2 1 3 27 27 H 1.09005 * 109.46877 * 119.99828 * 2 1 3 28 28 H 1.09001 * 108.98060 * 77.88985 * 6 4 3 29 29 H 1.09000 * 108.98254 * 319.17081 * 6 4 3 30 30 H 1.08999 * 108.85531 * 197.67835 * 7 6 4 31 31 H 1.08999 * 108.85272 * 79.29521 * 7 6 4 32 32 H 1.08998 * 109.54660 * 212.87361 * 8 7 6 33 33 H 1.08990 * 109.54780 * 333.05953 * 8 7 6 34 34 H 1.09003 * 109.02095 * 43.17713 * 9 8 7 35 35 H 1.09001 * 109.02244 * 161.99936 * 9 8 7 36 36 H 1.09000 * 109.46899 * 183.53352 * 13 11 10 37 37 H 1.08999 * 109.47325 * 303.53780 * 13 11 10 38 38 H 1.09002 * 109.46546 * 63.53890 * 13 11 10 39 39 H 0.96994 * 119.99908 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.74507 * 36.83336 * 22 10 9 41 41 H 1.09001 * 109.74451 * 157.50666 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9370 1.5058 0.0008 5 1 4.2258 0.8934 -0.8534 6 6 4.3593 0.7917 1.2961 7 6 5.8596 0.9809 1.5963 8 6 6.7170 0.8635 0.3620 9 6 6.9314 2.2704 -0.2378 10 7 5.8065 2.7111 -0.9408 11 6 6.0990 3.9452 -1.6819 12 1 7.0220 3.8190 -2.2479 13 6 6.2589 5.1056 -0.6975 14 6 4.9655 4.2428 -2.6293 15 1 4.1129 3.5816 -2.6759 16 6 5.0168 5.3594 -3.4366 17 7 6.0553 6.1644 -3.3803 18 14 3.6122 5.7279 -4.6115 19 1 2.5715 4.6762 -4.4842 20 1 3.0227 7.0497 -4.2791 21 1 4.1253 5.7511 -6.0049 22 6 4.5862 2.8614 -0.1234 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.1489 -0.2734 1.1986 29 1 3.7782 1.1916 2.1271 30 1 6.1729 0.2248 2.3161 31 1 6.0091 1.9668 2.0366 32 1 7.6811 0.4297 0.6275 33 1 6.2192 0.2261 -0.3686 34 1 7.1435 2.9720 0.5691 35 1 7.7849 2.2416 -0.9151 36 1 6.4136 6.0322 -1.2503 37 1 5.3593 5.1918 -0.0882 38 1 7.1179 4.9193 -0.0529 39 1 6.0917 6.9497 -3.9485 40 1 4.8495 3.2357 0.8659 41 1 3.9007 3.5557 -0.6094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246664085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:49 Heat of formation + Delta-G solvation = -24.952282 kcal Electronic energy + Delta-G solvation = -18324.769712 eV Core-core repulsion = 15750.651554 eV Total energy + Delta-G solvation = -2574.118159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51269 -36.55754 -34.37225 -33.59951 -33.09235 -30.68435 -27.35002 -26.82792 -26.19261 -24.17482 -23.03169 -20.99212 -20.45770 -18.21939 -17.68627 -16.87557 -16.35514 -16.30236 -15.94235 -15.47886 -15.36709 -14.94693 -14.61553 -14.18122 -13.79583 -13.59069 -13.38644 -13.16906 -13.03687 -12.92006 -12.67748 -12.42181 -12.37312 -12.22542 -12.08825 -11.92378 -11.76453 -11.43027 -11.30549 -11.21738 -10.89244 -10.62091 -10.47018 -8.78991 -8.57755 -8.10375 -6.19764 0.79659 1.39486 1.42063 1.54679 1.74868 2.43673 3.18596 3.34529 3.77255 3.99869 4.07243 4.09723 4.15497 4.17204 4.25842 4.49686 4.55745 4.63056 4.65921 4.72470 4.80860 4.82916 4.88771 4.93092 4.95048 5.01597 5.08080 5.13578 5.21790 5.25107 5.32133 5.36194 5.51203 5.53510 5.72917 5.82833 6.25891 6.48939 6.93684 7.01209 7.49235 8.95759 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.008054 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.425795 B = 3475.858522 C = 4865.446065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 S -0.324 6.324 4 C -0.025 4.025 5 H 0.083 0.917 6 C -0.103 4.103 7 C -0.111 4.111 8 C -0.110 4.110 9 C 0.072 3.928 10 N -0.552 5.552 11 C 0.221 3.779 12 H 0.008 0.992 13 C -0.156 4.156 14 C -0.506 4.506 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.921 5.921 18 Si 0.951 3.049 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.280 1.280 22 C 0.103 3.897 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.007 0.993 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.034 0.966 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 -13.542 10.144 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.224 4.224 3 S -0.096 6.096 4 C -0.154 4.154 5 H 0.101 0.899 6 C -0.143 4.143 7 C -0.151 4.151 8 C -0.148 4.148 9 C -0.058 4.058 10 N -0.275 5.275 11 C 0.114 3.886 12 H 0.026 0.974 13 C -0.215 4.215 14 C -0.545 4.545 15 H 0.072 0.928 16 C -0.185 4.185 17 N -0.561 5.561 18 Si 0.778 3.222 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.205 1.205 22 C -0.025 4.025 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.534 -12.808 9.740 17.016 hybrid contribution 0.496 0.399 -0.420 0.762 sum -5.038 -12.409 9.320 16.317 Atomic orbital electron populations 1.21517 0.91409 1.03549 1.02578 1.23329 1.00638 0.93050 1.05398 1.87239 1.08046 1.16299 1.98055 1.22965 0.90435 1.00133 1.01906 0.89908 1.22256 0.96769 1.00282 0.94977 1.21385 0.93662 1.02107 0.97902 1.21471 1.00669 0.95338 0.97280 1.21023 0.92724 0.96282 0.95773 1.58920 1.04415 1.33874 1.30306 1.19050 0.95245 0.83695 0.90565 0.97371 1.22193 0.97165 1.03665 0.98489 1.21386 1.04791 1.07881 1.20443 0.92804 1.25615 0.98106 0.96094 0.98714 1.70003 1.30631 1.14988 1.40502 0.85597 0.79843 0.77903 0.78904 1.19467 1.20754 1.20532 1.21205 0.91861 0.94623 0.94803 0.88803 0.91897 0.92857 0.90221 0.88668 0.90469 0.90943 0.89479 0.93361 0.89628 0.91616 0.97531 0.92868 0.91814 0.95483 0.95829 0.93022 0.94818 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.92 71.98 0.71 -1.72 16 2 C -0.08 -1.67 6.39 71.98 0.46 -1.21 16 3 S -0.32 -10.32 20.72 -56.49 -1.17 -11.49 16 4 C -0.03 -0.82 2.22 30.16 0.07 -0.75 16 5 H 0.08 2.90 7.27 -2.40 -0.02 2.89 16 6 C -0.10 -2.52 4.84 31.27 0.15 -2.37 16 7 C -0.11 -2.62 5.31 30.26 0.16 -2.46 16 8 C -0.11 -2.92 5.64 30.35 0.17 -2.74 16 9 C 0.07 2.58 4.62 88.07 0.41 2.98 16 10 N -0.55 -23.52 3.88 -892.24 -3.46 -26.99 16 11 C 0.22 11.40 2.26 44.17 0.10 11.50 16 12 H 0.01 0.48 7.82 -2.38 -0.02 0.46 16 13 C -0.16 -7.77 8.52 71.98 0.61 -7.16 16 14 C -0.51 -28.49 7.54 25.60 0.19 -28.29 16 15 H 0.05 3.10 7.20 -2.91 -0.02 3.08 16 16 C 0.01 0.73 5.30 84.66 0.45 1.18 16 17 N -0.92 -53.79 11.30 21.45 0.24 -53.55 16 18 Si 0.95 45.22 29.54 68.60 2.03 47.25 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 C 0.10 4.10 3.21 85.45 0.27 4.38 16 23 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 1.73 7.57 -2.39 -0.02 1.71 16 28 H 0.08 1.56 7.75 -2.39 -0.02 1.54 16 29 H 0.07 1.73 7.96 -2.39 -0.02 1.71 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.27 6.58 -2.39 -0.02 1.25 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.83 7.11 -2.39 -0.02 1.81 16 34 H 0.01 0.25 6.35 -2.39 -0.02 0.23 16 35 H 0.05 1.98 7.79 -2.39 -0.02 1.96 16 36 H 0.06 3.53 5.99 -2.39 -0.01 3.52 16 37 H 0.03 1.30 6.81 -2.39 -0.02 1.28 16 38 H 0.02 1.05 7.03 -2.39 -0.02 1.03 16 39 H 0.26 14.48 8.31 -92.71 -0.77 13.70 16 40 H 0.03 1.31 6.49 -2.39 -0.02 1.30 16 41 H 0.06 2.95 5.75 -2.39 -0.01 2.94 16 Total: -1.00 -61.56 315.16 2.37 -59.19 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.98 Total: 12.26 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 3.76 Total: -26.67 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -3.22 Total: -80.54 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: -10.32 SS G_CDS: -1.17 Total: -11.49 kcal Total: -61.56 2.37 -59.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246664085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.236 kcal (2) G-P(sol) polarization free energy of solvation -61.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds