Wall clock time and date at job start Mon Mar 30 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81400 * 109.46943 * 2 1 4 4 C 1.81394 * 103.00006 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46856 * 55.00419 * 4 3 2 6 6 C 1.53002 * 109.47320 * 295.00247 * 4 3 2 7 7 C 1.53005 * 109.46794 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47060 * 60.00242 * 7 6 4 9 9 C 1.52992 * 109.47151 * 299.99409 * 8 7 6 10 10 C 1.53001 * 109.47073 * 174.99962 * 4 3 2 11 11 H 1.08997 * 109.47325 * 300.00168 * 10 4 3 12 12 N 1.46900 * 109.47322 * 60.00413 * 10 4 3 13 13 C 1.46896 * 111.00205 * 255.44838 * 12 10 4 14 14 H 1.09001 * 109.47410 * 34.83507 * 13 12 10 15 15 C 1.53002 * 109.46772 * 274.84518 * 13 12 10 16 16 C 1.50700 * 109.47734 * 154.84126 * 13 12 10 17 17 H 1.08001 * 119.99223 * 4.04450 * 16 13 12 18 18 C 1.37866 * 120.00013 * 184.03826 * 16 13 12 19 19 N 1.31511 * 120.00432 * 7.28319 * 18 16 13 20 20 Si 1.86803 * 119.99809 * 187.27741 * 18 16 13 21 21 H 1.48503 * 109.47047 * 94.99192 * 20 18 16 22 22 H 1.48508 * 109.47428 * 214.98821 * 20 18 16 23 23 H 1.48494 * 109.47131 * 334.99215 * 20 18 16 24 24 H 1.08999 * 109.46889 * 299.99575 * 1 2 3 25 25 H 1.08996 * 109.47731 * 59.99854 * 1 2 3 26 26 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46889 * 240.00425 * 2 1 3 28 28 H 1.08998 * 109.47294 * 120.00433 * 2 1 3 29 29 H 1.08992 * 109.46740 * 60.00105 * 6 4 3 30 30 H 1.08995 * 109.46659 * 299.99463 * 6 4 3 31 31 H 1.08995 * 109.47152 * 300.00041 * 7 6 4 32 32 H 1.08997 * 109.46656 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46343 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.47302 * 59.99891 * 8 7 6 35 35 H 1.09005 * 109.47263 * 300.00902 * 9 8 7 36 36 H 1.08992 * 109.47470 * 180.02562 * 9 8 7 37 37 H 1.00893 * 111.00516 * 131.48760 * 12 10 4 38 38 H 1.08999 * 109.47413 * 174.54763 * 15 13 12 39 39 H 1.09006 * 109.46726 * 294.54486 * 15 13 12 40 40 H 1.08994 * 109.47437 * 54.54454 * 15 13 12 41 41 H 0.96999 * 120.00502 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9370 1.5059 -0.0008 5 1 4.2312 0.8794 -0.8429 6 6 4.3757 0.8424 1.3062 7 6 5.8959 0.6695 1.3052 8 6 6.5650 2.0397 1.1791 9 6 6.1264 2.7031 -0.1278 10 6 4.6056 2.8763 -0.1266 11 1 4.2931 3.3490 -1.0577 12 7 4.2092 3.7207 1.0082 13 6 3.2189 4.7246 0.5968 14 1 2.5663 4.3000 -0.1660 15 6 3.9397 5.9483 0.0275 16 6 2.3955 5.1366 1.7898 17 1 2.6305 4.7460 2.7689 18 6 1.3423 6.0120 1.6314 19 7 0.9654 6.3759 0.4251 20 14 0.4505 6.6812 3.1302 21 1 1.0271 7.9982 3.5022 22 1 -0.9920 6.8433 2.8165 23 1 0.6073 5.7343 4.2632 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8994 -0.1338 1.3958 30 1 4.0815 1.4690 2.1482 31 1 6.1897 0.0429 0.4632 32 1 6.2085 0.1973 2.2365 33 1 7.6480 1.9165 1.1789 34 1 6.2712 2.6664 2.0212 35 1 6.4201 2.0764 -0.9699 36 1 6.6033 3.6790 -0.2179 37 1 5.0135 4.1585 1.4316 38 1 3.2059 6.6517 -0.3663 39 1 4.5172 6.4296 0.8168 40 1 4.6094 5.6355 -0.7735 41 1 0.2241 6.9916 0.3136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249370174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:29 Heat of formation + Delta-G solvation = -23.946147 kcal Electronic energy + Delta-G solvation = -18354.681110 eV Core-core repulsion = 15780.606580 eV Total energy + Delta-G solvation = -2574.074530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.65197 -34.88728 -32.47455 -32.07302 -30.55164 -29.71418 -26.67907 -24.94155 -23.35211 -22.38247 -21.71261 -20.32839 -18.60771 -16.43527 -15.71959 -15.09612 -14.85865 -14.56429 -14.37568 -14.11653 -13.79369 -13.04331 -12.97751 -12.49761 -12.27958 -12.09151 -11.87138 -11.60058 -11.49210 -11.31653 -11.15380 -10.97367 -10.81248 -10.78898 -10.44699 -10.26147 -10.19959 -9.93948 -9.81374 -9.55884 -9.03644 -8.67940 -8.15467 -7.17105 -6.80209 -5.84846 -3.82296 2.32889 3.31535 3.40723 3.47653 3.52241 4.56364 4.94270 5.02141 5.19031 5.22843 5.33813 5.37957 5.48599 5.49323 5.56070 5.67314 5.72131 5.76435 5.84584 5.94839 5.99458 6.08234 6.09550 6.21191 6.33270 6.37651 6.49609 6.51241 6.56102 6.71913 6.86316 6.88467 7.16473 7.50310 7.71911 8.03725 8.38051 8.68009 8.75703 9.22223 9.79691 11.24789 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016458 B = 0.008417 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.863283 B = 3325.988915 C = 4343.433363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.119 4.119 3 S -0.185 6.185 4 C -0.043 4.043 5 H 0.066 0.934 6 C -0.105 4.105 7 C -0.111 4.111 8 C -0.115 4.115 9 C -0.122 4.122 10 C 0.104 3.896 11 H 0.053 0.947 12 N -0.668 5.668 13 C 0.212 3.788 14 H 0.052 0.948 15 C -0.165 4.165 16 C -0.481 4.481 17 H 0.060 0.940 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.888 3.112 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.274 1.274 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.324 0.676 38 H 0.071 0.929 39 H 0.029 0.971 40 H 0.005 0.995 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.323 -11.638 -1.521 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.267 4.267 3 S 0.045 5.955 4 C -0.173 4.173 5 H 0.084 0.916 6 C -0.144 4.144 7 C -0.151 4.151 8 C -0.152 4.152 9 C -0.162 4.162 10 C -0.008 4.008 11 H 0.071 0.929 12 N -0.298 5.298 13 C 0.104 3.896 14 H 0.070 0.930 15 C -0.225 4.225 16 C -0.520 4.520 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.717 3.283 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.199 1.199 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.024 0.976 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.041 -11.044 -1.397 12.665 hybrid contribution 0.732 -0.065 0.133 0.747 sum 6.773 -11.108 -1.265 13.072 Atomic orbital electron populations 1.21424 0.92949 1.01318 1.03312 1.23397 1.00034 0.99984 1.03331 1.88176 1.03861 1.05946 1.97564 1.23243 0.94483 1.00139 0.99426 0.91555 1.21741 0.94594 0.99402 0.98648 1.21501 0.95960 0.96895 1.00698 1.21464 0.98583 0.96748 0.98445 1.21872 0.95785 1.00585 0.97940 1.21199 0.91960 0.92339 0.95279 0.92869 1.60806 1.15756 1.26383 1.26866 1.19322 0.88650 0.85409 0.96241 0.93049 1.22440 0.99354 1.02933 0.97727 1.21018 1.12416 1.24381 0.94143 0.92209 1.24876 0.96871 0.97124 0.95409 1.69953 1.28156 1.34947 1.20571 0.86640 0.78829 0.79121 0.83724 1.21218 1.21604 1.19932 0.91590 0.92021 0.92306 0.91702 0.91005 0.93574 0.88762 0.93074 0.92421 0.92904 0.90776 0.92305 0.91885 0.85819 0.90996 0.95138 0.97594 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.92 37.16 0.37 -1.44 16 2 C -0.12 -1.75 6.36 37.16 0.24 -1.52 16 3 S -0.18 -3.54 19.01 -107.50 -2.04 -5.59 16 4 C -0.04 -0.70 2.45 -26.73 -0.07 -0.77 16 5 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 6 C -0.10 -1.55 4.95 -26.73 -0.13 -1.69 16 7 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 8 C -0.11 -1.46 5.74 -26.73 -0.15 -1.61 16 9 C -0.12 -1.69 5.27 -26.70 -0.14 -1.83 16 10 C 0.10 1.81 2.20 -67.68 -0.15 1.67 16 11 H 0.05 1.04 7.21 -51.93 -0.37 0.67 16 12 N -0.67 -13.48 4.68 -100.92 -0.47 -13.96 16 13 C 0.21 5.20 1.76 -68.87 -0.12 5.08 16 14 H 0.05 1.42 6.32 -51.93 -0.33 1.09 16 15 C -0.16 -3.92 8.92 37.16 0.33 -3.59 16 16 C -0.48 -13.24 8.78 -34.44 -0.30 -13.54 16 17 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 18 C 0.06 1.62 5.25 -17.82 -0.09 1.52 16 19 N -0.90 -26.21 12.00 55.43 0.66 -25.54 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 28 H 0.07 1.00 7.14 -51.93 -0.37 0.63 16 29 H 0.05 0.64 6.92 -51.93 -0.36 0.28 16 30 H 0.09 1.65 7.60 -51.93 -0.39 1.25 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.03 6.96 -51.93 -0.36 0.67 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.32 6.25 6.90 -39.30 -0.27 5.98 16 38 H 0.07 1.90 6.83 -51.93 -0.35 1.55 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.01 0.11 7.77 -51.93 -0.40 -0.29 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -28.65 323.43 -9.79 -38.44 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.41 Total: 4.06 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -0.38 Total: -19.25 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.19 Total: -39.50 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.04 Total: -5.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.65 -9.79 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249370174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.496 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds