Wall clock time and date at job start Mon Mar 30 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47006 * 2 1 4 4 C 1.81396 * 102.99933 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47248 * 54.99672 * 4 3 2 6 6 C 1.52997 * 109.47025 * 294.99695 * 4 3 2 7 7 C 1.53004 * 109.47204 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46878 * 60.00177 * 7 6 4 9 9 C 1.52997 * 109.47058 * 299.99912 * 8 7 6 10 10 C 1.52997 * 109.47362 * 60.00033 * 9 8 7 11 11 H 1.09007 * 109.46968 * 60.00076 * 10 9 8 12 12 N 1.46900 * 109.47447 * 179.97438 * 10 9 8 13 13 C 1.46901 * 110.99890 * 275.00408 * 12 10 9 14 14 H 1.09002 * 109.47401 * 34.99821 * 13 12 10 15 15 C 1.53002 * 109.46860 * 274.99873 * 13 12 10 16 16 C 1.50701 * 109.46921 * 154.99793 * 13 12 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 H 1.08999 * 109.47221 * 60.00669 * 1 2 3 25 25 H 1.09007 * 109.46992 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47248 * 299.99898 * 1 2 3 27 27 H 1.08997 * 109.47197 * 239.99548 * 2 1 3 28 28 H 1.09001 * 109.46683 * 119.99867 * 2 1 3 29 29 H 1.09001 * 109.47360 * 299.99638 * 6 4 3 30 30 H 1.09001 * 109.47405 * 60.00226 * 6 4 3 31 31 H 1.08997 * 109.47208 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47069 * 299.99977 * 7 6 4 33 33 H 1.08997 * 109.46970 * 60.00283 * 8 7 6 34 34 H 1.09008 * 109.46564 * 180.02562 * 8 7 6 35 35 H 1.09007 * 109.47017 * 300.00139 * 9 8 7 36 36 H 1.09006 * 109.46974 * 180.02562 * 9 8 7 37 37 H 1.00898 * 110.99796 * 151.04631 * 12 10 9 38 38 H 1.09002 * 109.47075 * 299.99593 * 15 13 12 39 39 H 1.08996 * 109.47407 * 60.00550 * 15 13 12 40 40 H 1.09000 * 109.46986 * 180.02562 * 15 13 12 41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9370 1.5058 0.0008 5 1 4.2320 0.8790 -0.8407 6 6 4.3745 0.8429 1.3084 7 6 5.8949 0.6710 1.3094 8 6 6.5631 2.0417 1.1841 9 6 6.1256 2.7046 -0.1236 10 6 4.6053 2.8764 -0.1246 11 1 4.3099 3.5031 0.7170 12 7 4.1853 3.5135 -1.3799 13 6 4.2874 4.9761 -1.2878 14 1 5.1473 5.2423 -0.6730 15 6 3.0134 5.5373 -0.6532 16 6 4.4584 5.5556 -2.6684 17 1 4.4878 4.9027 -3.5283 18 6 4.5762 6.9193 -2.8339 19 7 4.5399 7.7143 -1.7870 20 14 4.7873 7.6376 -4.5453 21 1 4.7959 6.5399 -5.5454 22 1 3.6626 8.5627 -4.8361 23 1 6.0708 8.3814 -4.6151 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0796 1.4697 2.1500 30 1 3.8981 -0.1334 1.3980 31 1 6.2065 0.1983 2.2408 32 1 6.1902 0.0444 0.4679 33 1 6.2677 2.6682 2.0257 34 1 7.6463 1.9191 1.1843 35 1 6.4210 2.0780 -0.9652 36 1 6.6021 3.6810 -0.2131 37 1 3.2503 3.2315 -1.6333 38 1 2.1536 5.2711 -1.2681 39 1 2.8898 5.1182 0.3453 40 1 3.0889 6.6225 -0.5853 41 1 4.6232 8.6737 -1.9034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249370177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:31 Heat of formation + Delta-G solvation = -29.998465 kcal Electronic energy + Delta-G solvation = -17977.669671 eV Core-core repulsion = 15403.332693 eV Total energy + Delta-G solvation = -2574.336978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.55232 -35.19726 -32.85270 -32.34722 -30.70138 -29.65011 -26.45585 -25.03480 -23.66251 -22.62759 -21.53857 -19.83988 -19.49247 -16.53998 -15.97649 -15.24942 -14.94512 -14.80594 -14.69735 -14.08832 -13.89488 -13.50181 -13.07212 -12.77878 -12.45869 -12.31626 -11.76186 -11.59820 -11.53826 -11.46320 -11.28859 -11.07909 -10.91314 -10.71348 -10.66571 -10.40919 -10.23230 -10.02618 -9.97165 -9.57810 -9.47092 -8.86224 -8.28533 -7.49628 -7.08645 -5.90893 -3.93331 1.81943 2.76034 3.36227 3.43664 3.49395 4.49154 4.73555 4.80905 4.88433 4.94159 5.10552 5.26714 5.32242 5.35687 5.40832 5.54694 5.60153 5.61887 5.72050 5.73918 5.76166 5.91682 6.00614 6.04375 6.24574 6.28051 6.32271 6.39302 6.67240 6.81010 6.83501 6.99842 7.24225 7.48803 7.85702 7.98490 8.37903 8.66610 8.73598 9.14383 9.71607 11.16242 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.006115 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.882777 B = 4578.099657 C = 5469.071149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 S -0.254 6.254 4 C -0.050 4.050 5 H 0.089 0.911 6 C -0.110 4.110 7 C -0.114 4.114 8 C -0.121 4.121 9 C -0.101 4.101 10 C 0.111 3.889 11 H 0.043 0.957 12 N -0.682 5.682 13 C 0.213 3.787 14 H 0.032 0.968 15 C -0.166 4.166 16 C -0.490 4.490 17 H 0.062 0.938 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.286 1.286 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.336 0.664 38 H 0.027 0.973 39 H 0.004 0.996 40 H 0.086 0.914 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -15.462 6.919 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.243 4.243 3 S -0.025 6.025 4 C -0.179 4.179 5 H 0.108 0.892 6 C -0.150 4.150 7 C -0.153 4.153 8 C -0.159 4.159 9 C -0.141 4.141 10 C -0.001 4.001 11 H 0.060 0.940 12 N -0.315 5.315 13 C 0.105 3.895 14 H 0.050 0.950 15 C -0.225 4.225 16 C -0.529 4.529 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.212 1.212 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.156 0.844 38 H 0.047 0.953 39 H 0.023 0.977 40 H 0.105 0.895 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.047 -14.405 6.617 15.984 hybrid contribution 0.009 -0.398 -0.301 0.500 sum -2.038 -14.803 6.316 16.223 Atomic orbital electron populations 1.21491 0.92568 1.02022 1.03253 1.23287 0.99956 0.96699 1.04358 1.87195 1.06528 1.11155 1.97644 1.23483 0.91867 1.01990 1.00603 0.89247 1.21839 0.96286 1.00009 0.96873 1.21545 0.94576 0.97804 1.01404 1.21585 0.99639 0.95916 0.98774 1.21533 0.94836 1.01437 0.96305 1.21179 0.94422 0.90485 0.93997 0.93959 1.60939 1.31003 1.11139 1.28408 1.19176 0.93271 0.80664 0.96384 0.94996 1.22393 0.99291 1.04974 0.95842 1.21199 1.47764 0.91169 0.92781 0.92003 1.24943 0.95757 0.97147 0.96739 1.69904 1.51584 1.03619 1.28704 0.86485 0.77428 0.78964 0.84769 1.19786 1.21276 1.21234 0.91603 0.91593 0.91852 0.90442 0.90580 0.90937 0.92395 0.92136 0.92038 0.92135 0.92042 0.91623 0.90939 0.84439 0.95344 0.97652 0.89522 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.92 37.16 0.37 -0.96 16 2 C -0.09 -1.06 6.36 37.16 0.24 -0.82 16 3 S -0.25 -3.89 19.63 -107.50 -2.11 -6.00 16 4 C -0.05 -0.75 2.29 -26.73 -0.06 -0.81 16 5 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 6 C -0.11 -1.35 5.11 -26.73 -0.14 -1.49 16 7 C -0.11 -1.29 5.92 -26.73 -0.16 -1.44 16 8 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 9 C -0.10 -1.69 5.41 -26.73 -0.14 -1.83 16 10 C 0.11 2.02 1.78 -67.71 -0.12 1.90 16 11 H 0.04 0.85 7.11 -51.93 -0.37 0.48 16 12 N -0.68 -14.94 6.04 -100.95 -0.61 -15.55 16 13 C 0.21 5.48 2.38 -68.86 -0.16 5.31 16 14 H 0.03 0.90 7.11 -51.93 -0.37 0.53 16 15 C -0.17 -4.19 8.92 37.16 0.33 -3.86 16 16 C -0.49 -13.87 8.84 -34.44 -0.30 -14.17 16 17 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 18 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 19 N -0.90 -26.20 11.32 55.43 0.63 -25.57 16 20 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.76 7.14 -51.92 -0.37 0.39 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.62 6.92 -51.93 -0.36 0.26 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.37 7.43 -51.93 -0.39 0.98 16 37 H 0.34 7.32 6.62 -39.29 -0.26 7.06 16 38 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 39 H 0.00 0.11 7.42 -51.93 -0.39 -0.28 16 40 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -28.93 325.64 -10.04 -38.97 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.43 Total: 4.82 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -0.41 Total: -18.48 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.02 Total: -41.12 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -2.11 Total: -6.00 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.93 -10.04 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249370177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.974 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds