Wall clock time and date at job start Mon Mar 30 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47006 * 2 1 4 4 C 1.81396 * 102.99933 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47248 * 54.99672 * 4 3 2 6 6 C 1.52997 * 109.47025 * 294.99695 * 4 3 2 7 7 C 1.53004 * 109.47204 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46878 * 60.00177 * 7 6 4 9 9 C 1.52997 * 109.47058 * 299.99912 * 8 7 6 10 10 C 1.52997 * 109.47362 * 60.00033 * 9 8 7 11 11 H 1.09007 * 109.46968 * 60.00076 * 10 9 8 12 12 N 1.46900 * 109.47447 * 179.97438 * 10 9 8 13 13 C 1.46901 * 110.99890 * 275.00408 * 12 10 9 14 14 H 1.09002 * 109.47401 * 34.99821 * 13 12 10 15 15 C 1.53002 * 109.46860 * 274.99873 * 13 12 10 16 16 C 1.50701 * 109.46921 * 154.99793 * 13 12 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 H 1.08999 * 109.47221 * 60.00669 * 1 2 3 25 25 H 1.09007 * 109.46992 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47248 * 299.99898 * 1 2 3 27 27 H 1.08997 * 109.47197 * 239.99548 * 2 1 3 28 28 H 1.09001 * 109.46683 * 119.99867 * 2 1 3 29 29 H 1.09001 * 109.47360 * 299.99638 * 6 4 3 30 30 H 1.09001 * 109.47405 * 60.00226 * 6 4 3 31 31 H 1.08997 * 109.47208 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47069 * 299.99977 * 7 6 4 33 33 H 1.08997 * 109.46970 * 60.00283 * 8 7 6 34 34 H 1.09008 * 109.46564 * 180.02562 * 8 7 6 35 35 H 1.09007 * 109.47017 * 300.00139 * 9 8 7 36 36 H 1.09006 * 109.46974 * 180.02562 * 9 8 7 37 37 H 1.00898 * 110.99796 * 151.04631 * 12 10 9 38 38 H 1.09002 * 109.47075 * 299.99593 * 15 13 12 39 39 H 1.08996 * 109.47407 * 60.00550 * 15 13 12 40 40 H 1.09000 * 109.46986 * 180.02562 * 15 13 12 41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9370 1.5058 0.0008 5 1 4.2320 0.8790 -0.8407 6 6 4.3745 0.8429 1.3084 7 6 5.8949 0.6710 1.3094 8 6 6.5631 2.0417 1.1841 9 6 6.1256 2.7046 -0.1236 10 6 4.6053 2.8764 -0.1246 11 1 4.3099 3.5031 0.7170 12 7 4.1853 3.5135 -1.3799 13 6 4.2874 4.9761 -1.2878 14 1 5.1473 5.2423 -0.6730 15 6 3.0134 5.5373 -0.6532 16 6 4.4584 5.5556 -2.6684 17 1 4.4878 4.9027 -3.5283 18 6 4.5762 6.9193 -2.8339 19 7 4.5399 7.7143 -1.7870 20 14 4.7873 7.6376 -4.5453 21 1 4.7959 6.5399 -5.5454 22 1 3.6626 8.5627 -4.8361 23 1 6.0708 8.3814 -4.6151 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0796 1.4697 2.1500 30 1 3.8981 -0.1334 1.3980 31 1 6.2065 0.1983 2.2408 32 1 6.1902 0.0444 0.4679 33 1 6.2677 2.6682 2.0257 34 1 7.6463 1.9191 1.1843 35 1 6.4210 2.0780 -0.9652 36 1 6.6021 3.6810 -0.2131 37 1 3.2503 3.2315 -1.6333 38 1 2.1536 5.2711 -1.2681 39 1 2.8898 5.1182 0.3453 40 1 3.0889 6.6225 -0.5853 41 1 4.6232 8.6737 -1.9034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249370177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:31 Heat of formation + Delta-G solvation = -46.223806 kcal Electronic energy + Delta-G solvation = -17978.373254 eV Core-core repulsion = 15403.332693 eV Total energy + Delta-G solvation = -2575.040561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.89142 -36.95078 -34.36038 -33.62699 -31.87717 -31.33456 -28.11815 -27.22936 -24.58168 -23.87480 -22.86365 -21.62980 -20.78967 -18.43851 -17.37411 -16.77972 -16.53143 -16.14439 -15.72072 -15.46949 -15.10322 -14.87888 -14.50817 -14.27785 -13.97366 -13.44578 -13.37553 -13.13930 -12.93992 -12.86323 -12.61269 -12.46953 -12.43385 -12.25571 -12.12824 -12.05950 -11.99840 -11.49227 -11.46247 -11.03113 -10.95029 -10.58141 -10.47404 -9.01017 -8.59779 -8.08970 -6.20009 0.72958 1.41560 1.42596 1.55682 1.69684 2.44341 3.19054 3.42836 3.65992 4.00336 4.04180 4.05426 4.13607 4.20238 4.32437 4.41890 4.48777 4.53051 4.55655 4.71757 4.83259 4.87527 4.90615 4.91606 4.94091 5.03672 5.11882 5.20406 5.22847 5.24341 5.24428 5.37764 5.43444 5.52989 5.68770 5.83250 6.28522 6.66508 6.85653 6.96059 7.49828 8.97152 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.006115 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.882777 B = 4578.099657 C = 5469.071149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 S -0.323 6.323 4 C -0.034 4.034 5 H 0.091 0.909 6 C -0.104 4.104 7 C -0.108 4.108 8 C -0.116 4.116 9 C -0.099 4.099 10 C 0.111 3.889 11 H 0.018 0.982 12 N -0.684 5.684 13 C 0.222 3.778 14 H 0.001 0.999 15 C -0.147 4.147 16 C -0.512 4.512 17 H 0.053 0.947 18 C 0.007 3.993 19 N -0.924 5.924 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.335 0.665 38 H 0.025 0.975 39 H 0.015 0.985 40 H 0.061 0.939 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 -17.826 7.014 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.223 4.223 3 S -0.094 6.094 4 C -0.163 4.163 5 H 0.109 0.891 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.154 4.154 9 C -0.138 4.138 10 C 0.000 4.000 11 H 0.036 0.964 12 N -0.316 5.316 13 C 0.113 3.887 14 H 0.019 0.981 15 C -0.207 4.207 16 C -0.551 4.551 17 H 0.071 0.929 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.155 0.845 38 H 0.044 0.956 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.024 -16.785 6.720 18.193 hybrid contribution -0.028 0.307 -0.307 0.435 sum -2.052 -16.478 6.413 17.801 Atomic orbital electron populations 1.21518 0.91608 1.03565 1.02501 1.23359 1.00496 0.92807 1.05665 1.87446 1.07768 1.16406 1.97810 1.23324 0.90977 0.99588 1.02434 0.89103 1.21830 0.97261 1.00680 0.94620 1.21536 0.93360 0.96496 1.03283 1.21554 1.00942 0.96824 0.96045 1.21492 0.93495 1.00074 0.98786 1.21225 0.95720 0.91936 0.91167 0.96423 1.60852 1.31040 1.08928 1.30823 1.18881 0.91981 0.83059 0.94784 0.98134 1.22167 0.99060 1.03118 0.96360 1.21459 1.48422 0.91685 0.93492 0.92881 1.25738 0.95227 0.97447 1.00620 1.70029 1.51811 1.03906 1.30683 0.85448 0.77569 0.78148 0.80080 1.19317 1.20615 1.20577 0.92746 0.88689 0.92297 0.89576 0.88651 0.91737 0.89848 0.89365 0.91061 0.92671 0.90288 0.91523 0.94387 0.84455 0.95560 0.96602 0.92035 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.92 71.98 0.71 -1.61 16 2 C -0.08 -1.49 6.36 71.98 0.46 -1.03 16 3 S -0.32 -9.69 19.63 -56.49 -1.11 -10.80 16 4 C -0.03 -0.99 2.29 30.59 0.07 -0.92 16 5 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 6 C -0.10 -2.28 5.11 30.59 0.16 -2.13 16 7 C -0.11 -2.08 5.92 30.60 0.18 -1.90 16 8 C -0.12 -2.86 5.92 30.59 0.18 -2.68 16 9 C -0.10 -3.34 5.41 30.59 0.17 -3.17 16 10 C 0.11 4.12 1.78 44.92 0.08 4.20 16 11 H 0.02 0.75 7.11 -2.38 -0.02 0.73 16 12 N -0.68 -30.95 6.04 -473.29 -2.86 -33.80 16 13 C 0.22 11.91 2.38 44.17 0.11 12.01 16 14 H 0.00 0.04 7.11 -2.39 -0.02 0.03 16 15 C -0.15 -7.76 8.92 71.98 0.64 -7.12 16 16 C -0.51 -29.76 8.84 25.60 0.23 -29.54 16 17 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 18 C 0.01 0.43 5.30 84.66 0.45 0.88 16 19 N -0.92 -55.16 11.32 21.45 0.24 -54.92 16 20 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 1.55 7.14 -2.39 -0.02 1.53 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.45 6.92 -2.39 -0.02 1.43 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.19 16 36 H 0.04 1.51 7.43 -2.38 -0.02 1.50 16 37 H 0.34 15.05 6.62 -89.70 -0.59 14.45 16 38 H 0.03 1.33 8.13 -2.39 -0.02 1.31 16 39 H 0.01 0.75 7.42 -2.39 -0.02 0.73 16 40 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 41 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -64.29 325.64 2.11 -62.17 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.38 Total: 22.90 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 3.43 Total: -33.00 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -2.62 Total: -88.72 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: -9.69 SS G_CDS: -1.11 Total: -10.80 kcal Total: -64.29 2.11 -62.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249370177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.948 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds