Wall clock time and date at job start Mon Mar 30 2020 06:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35750 * 117.00309 * 2 1 4 4 C 1.39232 * 119.86028 * 270.02664 * 3 2 1 5 5 Cl 1.73600 * 119.87964 * 359.97418 * 4 3 2 6 6 C 1.37560 * 120.23477 * 179.97438 * 4 3 2 7 7 C 1.40896 * 119.94625 * 359.97438 * 6 4 3 8 8 C 1.41204 * 120.13784 * 179.97438 * 7 6 4 9 9 H 1.07996 * 119.99684 * 204.62688 * 8 7 6 10 10 C 1.39843 * 120.00225 * 24.62895 * 8 7 6 11 11 N 1.30907 * 119.99823 * 17.96353 * 10 8 7 12 12 Si 1.86803 * 120.00082 * 197.96682 * 10 8 7 13 13 H 1.48498 * 109.47024 * 59.99796 * 12 10 8 14 14 H 1.48497 * 109.46865 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46603 * 299.99550 * 12 10 8 16 16 C 1.40715 * 119.71835 * 359.72765 * 7 6 4 17 17 C 1.38037 * 119.76742 * 0.56594 * 16 7 6 18 18 S 1.76193 * 119.97615 * 179.71397 * 17 16 7 19 19 C 1.81401 * 103.00214 * 359.72239 * 18 17 16 20 20 H 1.09001 * 109.46642 * 299.99893 * 1 2 3 21 21 H 1.09000 * 109.47225 * 59.99656 * 1 2 3 22 22 H 1.08995 * 109.47122 * 180.02562 * 1 2 3 23 23 H 1.08005 * 120.02815 * 179.97438 * 6 4 3 24 24 H 0.97000 * 119.99535 * 180.02562 * 11 10 8 25 25 H 1.07998 * 120.11568 * 180.27389 * 16 7 6 26 26 H 1.08995 * 109.47417 * 180.02562 * 19 18 17 27 27 H 1.09005 * 109.46956 * 60.00085 * 19 18 17 28 28 H 1.08997 * 109.47000 * 300.00416 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 2.3596 1.8274 -1.2075 5 17 1.9624 1.0480 -2.7069 6 6 2.9837 3.0533 -1.2165 7 6 3.3062 3.6873 -0.0002 8 6 3.9473 4.9454 -0.0047 9 1 4.5406 5.2520 0.8439 10 6 3.8139 5.7942 -1.1081 11 7 2.8437 5.6046 -1.9662 12 14 5.0203 7.1984 -1.3574 13 1 6.3951 6.6525 -1.4888 14 1 4.6641 7.9438 -2.5914 15 1 4.9610 8.1149 -0.1904 16 6 2.9820 3.0638 1.2189 17 6 2.3612 1.8308 1.2143 18 16 1.9596 1.0418 2.7375 19 6 2.5594 2.2210 3.9786 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 3.2263 3.5294 -2.1551 24 1 2.7514 6.1932 -2.7317 25 1 3.2222 3.5460 2.1549 26 1 2.3610 1.8304 4.9767 27 1 2.0456 3.1741 3.8523 28 1 3.6321 2.3670 3.8525 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258565632.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:21 Heat of formation + Delta-G solvation = -34.264523 kcal Electronic energy + Delta-G solvation = -14873.527065 eV Core-core repulsion = 12234.496316 eV Total energy + Delta-G solvation = -2639.030749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.55573 -36.42661 -35.46036 -33.60106 -30.01567 -29.57794 -28.27251 -26.64177 -24.68611 -21.77305 -20.90914 -18.01263 -16.84296 -16.01259 -15.32103 -14.99697 -14.69865 -14.10279 -13.65968 -13.28760 -13.11405 -13.06456 -12.34786 -12.07543 -11.95830 -11.51407 -11.36602 -11.07992 -10.97963 -10.65890 -10.48677 -10.36077 -9.87987 -9.61129 -9.39271 -9.00248 -8.46883 -7.56657 -7.03354 -6.62360 -4.64902 2.15368 2.32376 2.45444 2.92502 2.95068 2.98781 3.08715 3.29207 3.73781 4.15029 4.79861 5.28603 5.42634 5.47277 5.94176 5.98225 5.99779 6.15431 6.32108 6.51145 6.68405 6.90259 6.90819 6.97165 7.40603 7.54917 7.78292 8.16670 8.37419 8.53999 8.63385 9.89441 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.008622 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.338580 B = 3246.584341 C = 4540.450527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C -0.022 4.022 4 C -0.001 4.001 5 Cl -0.104 7.104 6 C -0.149 4.149 7 C 0.128 3.872 8 C -0.447 4.447 9 H 0.085 0.915 10 C 0.074 3.926 11 N -0.778 5.778 12 Si 0.914 3.086 13 H -0.260 1.260 14 H -0.275 1.275 15 H -0.263 1.263 16 C -0.226 4.226 17 C -0.049 4.049 18 S -0.135 6.135 19 C -0.142 4.142 20 H 0.039 0.961 21 H 0.036 0.964 22 H 0.076 0.924 23 H 0.136 0.864 24 H 0.288 0.712 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 -2.297 3.585 4.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C -0.072 4.072 4 C -0.029 4.029 5 Cl -0.075 7.075 6 C -0.171 4.171 7 C 0.123 3.877 8 C -0.475 4.475 9 H 0.103 0.897 10 C -0.146 4.146 11 N -0.402 5.402 12 Si 0.738 3.262 13 H -0.185 1.185 14 H -0.200 1.200 15 H -0.188 1.188 16 C -0.251 4.251 17 C -0.162 4.162 18 S 0.105 5.895 19 C -0.311 4.311 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.095 0.905 23 H 0.154 0.846 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.819 -3.485 3.557 5.302 hybrid contribution 0.791 2.099 -0.610 2.324 sum -1.028 -1.387 2.947 3.416 Atomic orbital electron populations 1.22877 0.82479 1.01240 0.99920 1.86079 1.17891 1.25327 1.94035 1.17230 1.10223 0.90736 0.89034 1.20925 1.03697 0.94361 0.83919 1.98262 1.93158 1.81725 1.34378 1.21257 1.03780 0.91920 1.00113 1.17374 0.88609 0.92190 0.89516 1.19541 1.26263 0.99371 1.02342 0.89693 1.26005 0.94715 0.99280 0.94614 1.69820 1.24592 1.35157 1.10604 0.86247 0.81236 0.79959 0.78761 1.18476 1.20026 1.18756 1.20973 1.10103 0.95812 0.98259 1.21394 1.04025 0.97154 0.93649 1.85047 1.77358 1.29669 0.97411 1.23566 1.04801 1.02464 1.00243 0.94258 0.94526 0.90507 0.84640 0.90107 0.87459 0.88582 0.90153 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.13 101.05 1.12 1.67 15 2 O -0.32 -6.88 9.21 -18.96 -0.17 -7.06 15 3 C -0.02 -0.52 5.74 -38.55 -0.22 -0.74 15 4 C 0.00 -0.01 6.32 -39.46 -0.25 -0.26 15 5 Cl -0.10 -2.19 28.48 -51.86 -1.48 -3.66 15 6 C -0.15 -3.74 8.45 -38.82 -0.33 -4.07 15 7 C 0.13 3.22 5.57 -106.83 -0.60 2.62 15 8 C -0.45 -10.90 9.03 -37.86 -0.34 -11.24 15 9 H 0.08 1.96 7.91 -52.49 -0.41 1.54 15 10 C 0.07 1.72 5.13 -17.35 -0.09 1.63 15 11 N -0.78 -18.77 10.96 55.54 0.61 -18.16 15 12 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 15 13 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 14 H -0.28 -5.10 7.11 56.52 0.40 -4.69 15 15 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 16 C -0.23 -5.25 9.09 -38.72 -0.35 -5.60 15 17 C -0.05 -1.11 6.11 -38.99 -0.24 -1.35 15 18 S -0.13 -2.52 22.04 -107.50 -2.37 -4.88 15 19 C -0.14 -2.08 9.14 101.05 0.92 -1.16 15 20 H 0.04 0.70 8.14 -51.93 -0.42 0.27 15 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.14 3.48 6.16 -52.48 -0.32 3.16 15 24 H 0.29 6.31 8.30 -40.82 -0.34 5.97 15 25 H 0.11 2.27 5.85 -52.49 -0.31 1.97 15 26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.08 1.18 7.73 -51.92 -0.40 0.77 15 28 H 0.08 1.17 7.75 -51.93 -0.40 0.77 15 LS Contribution 273.59 15.07 4.12 4.12 Total: -1.00 -26.10 273.59 -7.36 -33.46 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -2.67 Total: 2.43 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -0.37 Total: -18.49 kcal Atomic # 7 Polarization: -18.77 SS G_CDS: 0.61 Total: -18.16 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.17 Total: -7.06 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.37 Total: -4.88 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -1.48 Total: -3.66 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -26.10 -7.36 -33.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258565632.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.801 kcal (2) G-P(sol) polarization free energy of solvation -26.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds