Wall clock time and date at job start Mon Mar 30 2020 07:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.62345 * 2 1 4 4 C 1.34488 * 125.77465 * 89.61113 * 3 2 1 5 5 C 1.41412 * 106.84905 * 180.02562 * 4 3 2 6 6 C 1.34657 * 106.82996 * 359.97438 * 5 4 3 7 7 Cl 1.73599 * 125.79963 * 180.02562 * 6 5 4 8 8 O 1.34305 * 108.39491 * 0.26870 * 6 5 4 9 9 O 1.43748 * 109.50780 * 120.31695 * 2 1 3 10 10 C 1.44786 * 104.81532 * 95.49880 * 9 2 1 11 11 C 1.54911 * 101.72126 * 36.10216 * 10 9 2 12 12 H 1.08992 * 110.69722 * 82.83890 * 11 10 9 13 13 C 1.50701 * 110.84121 * 205.97498 * 11 10 9 14 14 H 1.08007 * 119.99997 * 355.19172 * 13 11 10 15 15 C 1.37875 * 120.00462 * 175.19459 * 13 11 10 16 16 N 1.31522 * 119.99338 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00386 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47155 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47144 * 120.00138 * 17 15 13 20 20 H 1.48498 * 109.47062 * 239.99807 * 17 15 13 21 21 O 1.43368 * 109.63350 * 239.60844 * 2 1 3 22 22 H 1.09001 * 109.47217 * 60.00621 * 1 2 3 23 23 H 1.09000 * 109.46889 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47200 * 299.99474 * 1 2 3 25 25 H 1.07997 * 126.58093 * 0.04891 * 4 3 2 26 26 H 1.08005 * 126.58679 * 180.02562 * 5 4 3 27 27 H 1.08996 * 110.97543 * 277.98703 * 10 9 2 28 28 H 1.09002 * 111.00783 * 154.22435 * 10 9 2 29 29 H 0.97002 * 119.99138 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0361 1.4195 0.0000 4 6 2.2932 2.1625 1.0911 5 6 2.7448 3.4217 0.6325 6 6 2.7371 3.3722 -0.7132 7 17 3.2041 4.6601 -1.7794 8 8 2.3016 2.1589 -1.0901 9 8 2.0100 -0.6840 1.1697 10 6 2.2601 -2.0403 0.7289 11 6 2.7857 -1.8116 -0.7102 12 1 3.8485 -1.5702 -0.6984 13 6 2.5252 -3.0186 -1.5742 14 1 2.1017 -3.9123 -1.1400 15 6 2.8276 -2.9822 -2.9189 16 7 3.3429 -1.8938 -3.4477 17 14 2.5054 -4.4785 -3.9896 18 1 1.9255 -5.5652 -3.1601 19 1 1.5520 -4.1183 -5.0696 20 1 3.7821 -4.9414 -4.5905 21 8 2.0117 -0.6831 -1.1648 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 2.1774 1.8563 2.1203 26 1 3.0401 4.2615 1.2440 27 1 1.3395 -2.6237 0.7202 28 1 3.0174 -2.5194 1.3494 29 1 3.5559 -1.8683 -4.3937 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258908301.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:41 Heat of formation + Delta-G solvation = -88.687667 kcal Electronic energy + Delta-G solvation = -17479.721489 eV Core-core repulsion = 14395.577905 eV Total energy + Delta-G solvation = -3084.143585 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.76260 -41.10429 -38.03882 -35.98513 -34.82699 -34.25701 -33.02885 -30.09994 -29.40034 -26.78182 -24.07863 -23.46884 -22.62550 -21.41345 -19.14856 -18.89333 -17.87287 -17.52616 -17.18035 -16.67711 -15.78002 -15.56994 -14.81456 -14.44268 -14.29225 -14.18127 -13.95760 -13.82248 -13.53514 -13.20892 -13.09773 -12.91592 -12.82697 -12.41123 -12.38919 -12.22804 -11.36696 -11.02586 -10.98003 -10.79516 -10.31804 -9.51296 -8.23086 -6.47460 0.10490 0.41981 1.41089 1.42424 1.43152 1.55459 2.02554 2.36890 2.79836 3.14486 3.33984 3.75854 3.91727 4.14931 4.16945 4.33776 4.45225 4.50049 4.56414 4.69141 4.77574 4.85879 4.91069 5.10669 5.31285 5.35124 5.62784 5.86993 5.98479 6.43779 6.76572 7.30565 8.85554 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.006681 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.575644 B = 4189.724469 C = 5013.334918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.313 3.687 3 C -0.020 4.020 4 C -0.177 4.177 5 C -0.163 4.163 6 C -0.003 4.003 7 Cl 0.034 6.966 8 O -0.181 6.181 9 O -0.376 6.376 10 C 0.035 3.965 11 C 0.173 3.827 12 H 0.004 0.996 13 C -0.556 4.556 14 H 0.083 0.917 15 C 0.023 3.977 16 N -0.903 5.903 17 Si 0.970 3.030 18 H -0.253 1.253 19 H -0.283 1.283 20 H -0.277 1.277 21 O -0.380 6.380 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.182 0.818 26 H 0.197 0.803 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 8.191 8.592 12.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.234 3.766 3 C -0.071 4.071 4 C -0.196 4.196 5 C -0.182 4.182 6 C -0.079 4.079 7 Cl 0.063 6.937 8 O -0.079 6.079 9 O -0.298 6.298 10 C -0.041 4.041 11 C 0.118 3.882 12 H 0.022 0.978 13 C -0.593 4.593 14 H 0.101 0.899 15 C -0.180 4.180 16 N -0.540 5.540 17 Si 0.794 3.206 18 H -0.176 1.176 19 H -0.209 1.209 20 H -0.203 1.203 21 O -0.301 6.301 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.116 0.884 25 H 0.199 0.801 26 H 0.214 0.786 27 H 0.103 0.897 28 H 0.139 0.861 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.230 8.444 8.049 12.104 hybrid contribution 0.292 -0.365 -1.093 1.188 sum -2.939 8.079 6.956 11.059 Atomic orbital electron populations 1.22247 0.90710 1.04105 1.03629 1.21531 0.93709 0.83454 0.77866 1.22835 1.05448 0.94536 0.84271 1.21828 1.04667 0.93006 1.00096 1.21913 1.05162 1.00312 0.90836 1.22976 1.08741 0.84690 0.91482 1.98395 1.89598 1.39106 1.66630 1.84001 1.65321 1.22319 1.36293 1.89011 1.86633 1.23385 1.30730 1.24579 1.01958 0.82492 0.95043 1.21316 0.90643 0.84807 0.91405 0.97807 1.21421 1.45201 0.97979 0.94683 0.89872 1.26050 0.93140 0.98987 0.99824 1.70227 1.41377 1.29300 1.13050 0.85336 0.77964 0.78955 0.78342 1.17632 1.20869 1.20283 1.89296 1.69895 1.43506 1.27407 0.91616 0.90527 0.88447 0.80111 0.78553 0.89724 0.86125 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.17 71.98 0.66 -4.55 15 2 C 0.31 13.30 1.40 29.85 0.04 13.34 15 3 C -0.02 -0.81 6.11 24.83 0.15 -0.66 15 4 C -0.18 -5.65 10.38 22.19 0.23 -5.42 15 5 C -0.16 -4.59 10.88 22.23 0.24 -4.35 15 6 C 0.00 -0.10 7.94 67.00 0.53 0.43 15 7 Cl 0.03 0.95 29.30 -2.72 -0.08 0.87 15 8 O -0.18 -7.86 10.60 3.07 0.03 -7.83 15 9 O -0.38 -14.85 10.62 -126.22 -1.34 -16.19 15 10 C 0.03 1.39 7.33 72.64 0.53 1.92 15 11 C 0.17 9.05 3.50 30.50 0.11 9.16 15 12 H 0.00 0.25 8.14 -2.39 -0.02 0.23 15 13 C -0.56 -30.22 8.84 25.60 0.23 -29.99 15 14 H 0.08 4.17 7.78 -2.91 -0.02 4.15 15 15 C 0.02 1.28 5.42 84.65 0.46 1.74 15 16 N -0.90 -55.08 12.95 21.45 0.28 -54.80 15 17 Si 0.97 42.90 29.54 68.60 2.03 44.93 15 18 H -0.25 -10.36 7.11 99.48 0.71 -9.65 15 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 15 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 21 O -0.38 -20.52 10.06 -122.61 -1.23 -21.75 15 22 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 24 H 0.10 2.72 8.14 -2.39 -0.02 2.70 15 25 H 0.18 4.78 8.06 -2.91 -0.02 4.76 15 26 H 0.20 3.80 8.06 -2.91 -0.02 3.77 15 27 H 0.08 3.11 8.04 -2.39 -0.02 3.10 15 28 H 0.12 4.11 8.14 -2.39 -0.02 4.09 15 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 15 Total: -1.00 -67.81 276.32 4.03 -63.78 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.16 Total: 9.37 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 3.18 Total: -18.38 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.28 Total: -54.80 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -2.54 Total: -45.77 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 17 Polarization: 0.95 SS G_CDS: -0.08 Total: 0.87 kcal Total: -67.81 4.03 -63.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258908301.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.905 kcal (2) G-P(sol) polarization free energy of solvation -67.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds