Wall clock time and date at job start Mon Mar 30 2020 06:49:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35955 * 116.99520 * 2 1
4 4 C 1.38503 * 120.08162 * 90.00427 * 3 2 1
5 5 C 1.50704 * 119.97919 * 359.97438 * 4 3 2
6 6 C 1.38281 * 120.04869 * 179.72478 * 4 3 2
7 7 C 1.38467 * 120.21360 * 0.27622 * 6 4 3
8 8 Cl 1.73597 * 119.91519 * 179.97438 * 7 6 4
9 9 C 1.38192 * 120.16976 * 359.97438 * 7 6 4
10 10 C 1.38996 * 119.94961 * 0.02562 * 9 7 6
11 11 S 1.76200 * 120.10728 * 179.97438 * 10 9 7
12 12 C 1.76202 * 99.99957 * 6.90445 * 11 10 9
13 13 H 1.08001 * 119.99946 * 5.66289 * 12 11 10
14 14 C 1.38689 * 119.99826 * 185.67295 * 12 11 10
15 15 N 1.31656 * 119.99818 * 180.02562 * 14 12 11
16 16 Si 1.86793 * 119.99960 * 359.97438 * 14 12 11
17 17 H 1.48503 * 109.47405 * 90.00611 * 16 14 12
18 18 H 1.48508 * 109.47001 * 210.00452 * 16 14 12
19 19 H 1.48502 * 109.47715 * 330.00344 * 16 14 12
20 20 H 1.08992 * 109.47594 * 59.99832 * 1 2 3
21 21 H 1.09005 * 109.47043 * 179.97438 * 1 2 3
22 22 H 1.08996 * 109.47061 * 299.99234 * 1 2 3
23 23 H 1.09003 * 109.46771 * 269.73027 * 5 4 3
24 24 H 1.09001 * 109.47228 * 149.72653 * 5 4 3
25 25 H 1.09001 * 109.46542 * 29.72305 * 5 4 3
26 26 H 1.07997 * 119.89193 * 180.29105 * 6 4 3
27 27 H 1.07994 * 120.02386 * 179.97438 * 9 7 6
28 28 H 0.96993 * 119.99789 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2114 0.0000
4 6 2.3613 1.8300 1.1985
5 6 2.0195 1.1600 2.5044
6 6 2.9941 3.0595 1.1977
7 6 3.3100 3.6798 0.0007
8 17 4.1039 5.2236 0.0088
9 6 2.9950 3.0731 -1.2002
10 6 2.3590 1.8372 -1.2075
11 16 1.9548 1.0602 -2.7364
12 6 2.7522 2.1599 -3.8587
13 1 3.3647 2.9656 -3.4818
14 6 2.5931 1.9908 -5.2261
15 7 3.1893 2.8122 -6.0646
16 14 1.5340 0.5970 -5.8778
17 1 0.1328 1.0666 -6.0240
18 1 2.0500 0.1598 -7.2000
19 1 1.5772 -0.5436 -4.9279
20 1 -0.3634 0.5138 -0.8899
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5137 0.8900
23 1 1.0235 1.4691 2.8215
24 1 2.7479 1.4483 3.2623
25 1 2.0398 0.0780 2.3738
26 1 3.2430 3.5373 2.1337
27 1 3.2421 3.5592 -2.1324
28 1 3.0783 2.6938 -7.0209
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259060930.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:49:41
Heat of formation + Delta-G solvation = -28.164450 kcal
Electronic energy + Delta-G solvation = -14692.198312 eV
Core-core repulsion = 12053.432082 eV
Total energy + Delta-G solvation = -2638.766230 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 258.022 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.53532 -37.08789 -35.77806 -32.83698 -32.36068 -29.67416 -27.39922 -26.22116
-25.60039 -22.37011 -21.17028 -18.42199 -17.04455 -16.11212 -15.82817 -15.34040
-15.21072 -14.46558 -13.70529 -13.41167 -13.37346 -12.89646 -12.53028 -12.45563
-12.04695 -11.88202 -11.40616 -11.27318 -11.23182 -10.96325 -10.81636 -10.54314
-9.98534 -9.53887 -9.41901 -8.96718 -8.88160 -8.05790 -6.93137 -6.55651
-4.31512 1.45562 1.66018 2.49322 2.74801 3.10398 3.22157 3.32725
3.72967 4.03916 4.30266 4.45042 4.85305 5.10323 5.38228 5.47455
5.53470 5.62770 5.70365 5.82167 5.86639 5.99300 6.03763 6.28090
6.51616 6.70947 6.80550 7.01065 7.67549 7.88921 8.25662 8.85665
10.51640
Molecular weight = 258.02amu
Principal moments of inertia in cm(-1)
A = 0.018924 B = 0.008690 C = 0.006064
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1479.253855 B = 3221.458111 C = 4616.296759
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.324 6.324
3 C 0.078 3.922
4 C -0.077 4.077
5 C -0.105 4.105
6 C -0.143 4.143
7 C -0.011 4.011
8 Cl -0.084 7.084
9 C -0.124 4.124
10 C -0.071 4.071
11 S -0.002 6.002
12 C -0.548 4.548
13 H 0.110 0.890
14 C 0.102 3.898
15 N -0.860 5.860
16 Si 0.854 3.146
17 H -0.263 1.263
18 H -0.268 1.268
19 H -0.238 1.238
20 H 0.050 0.950
21 H 0.089 0.911
22 H 0.040 0.960
23 H 0.065 0.935
24 H 0.065 0.935
25 H 0.072 0.928
26 H 0.126 0.874
27 H 0.157 0.843
28 H 0.276 0.724
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.932 -1.949 12.738 13.473
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.240 6.240
3 C 0.026 3.974
4 C -0.079 4.079
5 C -0.162 4.162
6 C -0.167 4.167
7 C -0.039 4.039
8 Cl -0.056 7.056
9 C -0.150 4.150
10 C -0.187 4.187
11 S 0.254 5.746
12 C -0.694 4.694
13 H 0.127 0.873
14 C -0.110 4.110
15 N -0.493 5.493
16 Si 0.678 3.322
17 H -0.187 1.187
18 H -0.192 1.192
19 H -0.162 1.162
20 H 0.069 0.931
21 H 0.107 0.893
22 H 0.059 0.941
23 H 0.083 0.917
24 H 0.084 0.916
25 H 0.091 0.909
26 H 0.144 0.856
27 H 0.174 0.826
28 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -4.417 -3.029 11.978 13.121
hybrid contribution 0.296 1.103 -0.350 1.194
sum -4.122 -1.927 11.628 12.487
Atomic orbital electron populations
1.22931 0.80058 1.02631 1.00613 1.86021 1.19193 1.24679 1.94144
1.17981 1.01544 0.87467 0.90451 1.19776 0.99645 0.93941 0.94580
1.20642 1.01226 1.01020 0.93308 1.20498 1.04187 0.95603 0.96393
1.20783 1.00341 0.87912 0.94913 1.98331 1.79036 1.29217 1.98980
1.21366 1.00579 0.94920 0.98109 1.22518 1.01077 0.96396 0.98740
1.83060 1.63914 1.33647 0.93936 1.22826 1.35577 1.18242 0.92799
0.87287 1.24791 0.94644 0.95835 0.95685 1.69928 1.40454 1.35478
1.03459 0.86823 0.81381 0.83311 0.80726 1.18749 1.19228 1.16181
0.93119 0.89292 0.94146 0.91661 0.91644 0.90868 0.85574 0.82630
0.91356
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.46 11.13 101.05 1.12 1.58 15
2 O -0.32 -5.74 8.83 -19.60 -0.17 -5.91 15
3 C 0.08 1.47 5.70 -38.99 -0.22 1.25 15
4 C -0.08 -1.24 5.89 -104.51 -0.62 -1.86 15
5 C -0.11 -1.28 9.79 36.01 0.35 -0.93 15
6 C -0.14 -2.29 9.48 -39.48 -0.37 -2.67 15
7 C -0.01 -0.20 6.32 -39.51 -0.25 -0.45 15
8 Cl -0.08 -1.39 28.95 -51.86 -1.50 -2.89 15
9 C -0.12 -2.62 9.00 -39.32 -0.35 -2.98 15
10 C -0.07 -1.53 6.11 -38.81 -0.24 -1.77 15
11 S 0.00 -0.04 19.11 -107.50 -2.05 -2.09 15
12 C -0.55 -14.91 9.53 30.90 0.29 -14.61 15
13 H 0.11 3.12 5.21 -52.49 -0.27 2.85 15
14 C 0.10 2.78 5.50 -17.46 -0.10 2.68 15
15 N -0.86 -24.48 13.97 55.48 0.78 -23.70 15
16 Si 0.85 19.83 27.73 -169.99 -4.71 15.11 15
17 H -0.26 -5.98 7.11 56.52 0.40 -5.58 15
18 H -0.27 -6.04 7.11 56.52 0.40 -5.63 15
19 H -0.24 -5.38 6.74 56.52 0.38 -5.00 15
20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15
21 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15
22 H 0.04 0.49 8.14 -51.93 -0.42 0.06 15
23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15
24 H 0.06 0.68 8.09 -51.93 -0.42 0.26 15
25 H 0.07 0.90 7.52 -51.93 -0.39 0.51 15
26 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15
27 H 0.16 3.63 5.03 -52.49 -0.26 3.36 15
28 H 0.28 7.26 8.31 -40.82 -0.34 6.92 15
LS Contribution 272.76 15.07 4.11 4.11
Total: -1.00 -28.35 272.76 -6.55 -34.90
By element:
Atomic # 1 Polarization: 2.82 SS G_CDS: -2.62 Total: 0.21 kcal
Atomic # 6 Polarization: -19.37 SS G_CDS: -0.38 Total: -19.74 kcal
Atomic # 7 Polarization: -24.48 SS G_CDS: 0.78 Total: -23.70 kcal
Atomic # 8 Polarization: -5.74 SS G_CDS: -0.17 Total: -5.91 kcal
Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal
Atomic # 16 Polarization: -0.04 SS G_CDS: -2.05 Total: -2.09 kcal
Atomic # 17 Polarization: -1.39 SS G_CDS: -1.50 Total: -2.89 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -28.35 -6.55 -34.90 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259060930.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.739 kcal
(2) G-P(sol) polarization free energy of solvation -28.353 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.614 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.903 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds