Wall clock time and date at job start Mon Mar 30 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35955 * 116.99520 * 2 1 4 4 C 1.38503 * 120.08162 * 90.00427 * 3 2 1 5 5 C 1.50704 * 119.97919 * 359.97438 * 4 3 2 6 6 C 1.38281 * 120.04869 * 179.72478 * 4 3 2 7 7 C 1.38467 * 120.21360 * 0.27622 * 6 4 3 8 8 Cl 1.73597 * 119.91519 * 179.97438 * 7 6 4 9 9 C 1.38192 * 120.16976 * 359.97438 * 7 6 4 10 10 C 1.38996 * 119.94961 * 0.02562 * 9 7 6 11 11 S 1.76200 * 120.10728 * 179.97438 * 10 9 7 12 12 C 1.76202 * 99.99957 * 6.90445 * 11 10 9 13 13 H 1.08001 * 119.99946 * 5.66289 * 12 11 10 14 14 C 1.38689 * 119.99826 * 185.67295 * 12 11 10 15 15 N 1.31656 * 119.99818 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 119.99960 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47405 * 90.00611 * 16 14 12 18 18 H 1.48508 * 109.47001 * 210.00452 * 16 14 12 19 19 H 1.48502 * 109.47715 * 330.00344 * 16 14 12 20 20 H 1.08992 * 109.47594 * 59.99832 * 1 2 3 21 21 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47061 * 299.99234 * 1 2 3 23 23 H 1.09003 * 109.46771 * 269.73027 * 5 4 3 24 24 H 1.09001 * 109.47228 * 149.72653 * 5 4 3 25 25 H 1.09001 * 109.46542 * 29.72305 * 5 4 3 26 26 H 1.07997 * 119.89193 * 180.29105 * 6 4 3 27 27 H 1.07994 * 120.02386 * 179.97438 * 9 7 6 28 28 H 0.96993 * 119.99789 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 2.3613 1.8300 1.1985 5 6 2.0195 1.1600 2.5044 6 6 2.9941 3.0595 1.1977 7 6 3.3100 3.6798 0.0007 8 17 4.1039 5.2236 0.0088 9 6 2.9950 3.0731 -1.2002 10 6 2.3590 1.8372 -1.2075 11 16 1.9548 1.0602 -2.7364 12 6 2.7522 2.1599 -3.8587 13 1 3.3647 2.9656 -3.4818 14 6 2.5931 1.9908 -5.2261 15 7 3.1893 2.8122 -6.0646 16 14 1.5340 0.5970 -5.8778 17 1 0.1328 1.0666 -6.0240 18 1 2.0500 0.1598 -7.2000 19 1 1.5772 -0.5436 -4.9279 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.0235 1.4691 2.8215 24 1 2.7479 1.4483 3.2623 25 1 2.0398 0.0780 2.3738 26 1 3.2430 3.5373 2.1337 27 1 3.2421 3.5592 -2.1324 28 1 3.0783 2.6938 -7.0209 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259060930.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:41 Heat of formation + Delta-G solvation = -28.164450 kcal Electronic energy + Delta-G solvation = -14692.198312 eV Core-core repulsion = 12053.432082 eV Total energy + Delta-G solvation = -2638.766230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.53532 -37.08789 -35.77806 -32.83698 -32.36068 -29.67416 -27.39922 -26.22116 -25.60039 -22.37011 -21.17028 -18.42199 -17.04455 -16.11212 -15.82817 -15.34040 -15.21072 -14.46558 -13.70529 -13.41167 -13.37346 -12.89646 -12.53028 -12.45563 -12.04695 -11.88202 -11.40616 -11.27318 -11.23182 -10.96325 -10.81636 -10.54314 -9.98534 -9.53887 -9.41901 -8.96718 -8.88160 -8.05790 -6.93137 -6.55651 -4.31512 1.45562 1.66018 2.49322 2.74801 3.10398 3.22157 3.32725 3.72967 4.03916 4.30266 4.45042 4.85305 5.10323 5.38228 5.47455 5.53470 5.62770 5.70365 5.82167 5.86639 5.99300 6.03763 6.28090 6.51616 6.70947 6.80550 7.01065 7.67549 7.88921 8.25662 8.85665 10.51640 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.008690 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.253855 B = 3221.458111 C = 4616.296759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.324 6.324 3 C 0.078 3.922 4 C -0.077 4.077 5 C -0.105 4.105 6 C -0.143 4.143 7 C -0.011 4.011 8 Cl -0.084 7.084 9 C -0.124 4.124 10 C -0.071 4.071 11 S -0.002 6.002 12 C -0.548 4.548 13 H 0.110 0.890 14 C 0.102 3.898 15 N -0.860 5.860 16 Si 0.854 3.146 17 H -0.263 1.263 18 H -0.268 1.268 19 H -0.238 1.238 20 H 0.050 0.950 21 H 0.089 0.911 22 H 0.040 0.960 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.157 0.843 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -1.949 12.738 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.240 6.240 3 C 0.026 3.974 4 C -0.079 4.079 5 C -0.162 4.162 6 C -0.167 4.167 7 C -0.039 4.039 8 Cl -0.056 7.056 9 C -0.150 4.150 10 C -0.187 4.187 11 S 0.254 5.746 12 C -0.694 4.694 13 H 0.127 0.873 14 C -0.110 4.110 15 N -0.493 5.493 16 Si 0.678 3.322 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.162 1.162 20 H 0.069 0.931 21 H 0.107 0.893 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.144 0.856 27 H 0.174 0.826 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.417 -3.029 11.978 13.121 hybrid contribution 0.296 1.103 -0.350 1.194 sum -4.122 -1.927 11.628 12.487 Atomic orbital electron populations 1.22931 0.80058 1.02631 1.00613 1.86021 1.19193 1.24679 1.94144 1.17981 1.01544 0.87467 0.90451 1.19776 0.99645 0.93941 0.94580 1.20642 1.01226 1.01020 0.93308 1.20498 1.04187 0.95603 0.96393 1.20783 1.00341 0.87912 0.94913 1.98331 1.79036 1.29217 1.98980 1.21366 1.00579 0.94920 0.98109 1.22518 1.01077 0.96396 0.98740 1.83060 1.63914 1.33647 0.93936 1.22826 1.35577 1.18242 0.92799 0.87287 1.24791 0.94644 0.95835 0.95685 1.69928 1.40454 1.35478 1.03459 0.86823 0.81381 0.83311 0.80726 1.18749 1.19228 1.16181 0.93119 0.89292 0.94146 0.91661 0.91644 0.90868 0.85574 0.82630 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.13 101.05 1.12 1.58 15 2 O -0.32 -5.74 8.83 -19.60 -0.17 -5.91 15 3 C 0.08 1.47 5.70 -38.99 -0.22 1.25 15 4 C -0.08 -1.24 5.89 -104.51 -0.62 -1.86 15 5 C -0.11 -1.28 9.79 36.01 0.35 -0.93 15 6 C -0.14 -2.29 9.48 -39.48 -0.37 -2.67 15 7 C -0.01 -0.20 6.32 -39.51 -0.25 -0.45 15 8 Cl -0.08 -1.39 28.95 -51.86 -1.50 -2.89 15 9 C -0.12 -2.62 9.00 -39.32 -0.35 -2.98 15 10 C -0.07 -1.53 6.11 -38.81 -0.24 -1.77 15 11 S 0.00 -0.04 19.11 -107.50 -2.05 -2.09 15 12 C -0.55 -14.91 9.53 30.90 0.29 -14.61 15 13 H 0.11 3.12 5.21 -52.49 -0.27 2.85 15 14 C 0.10 2.78 5.50 -17.46 -0.10 2.68 15 15 N -0.86 -24.48 13.97 55.48 0.78 -23.70 15 16 Si 0.85 19.83 27.73 -169.99 -4.71 15.11 15 17 H -0.26 -5.98 7.11 56.52 0.40 -5.58 15 18 H -0.27 -6.04 7.11 56.52 0.40 -5.63 15 19 H -0.24 -5.38 6.74 56.52 0.38 -5.00 15 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.04 0.49 8.14 -51.93 -0.42 0.06 15 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15 24 H 0.06 0.68 8.09 -51.93 -0.42 0.26 15 25 H 0.07 0.90 7.52 -51.93 -0.39 0.51 15 26 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 27 H 0.16 3.63 5.03 -52.49 -0.26 3.36 15 28 H 0.28 7.26 8.31 -40.82 -0.34 6.92 15 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -28.35 272.76 -6.55 -34.90 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -2.62 Total: 0.21 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -0.38 Total: -19.74 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.78 Total: -23.70 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.17 Total: -5.91 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.05 Total: -2.09 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.50 Total: -2.89 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.35 -6.55 -34.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259060930.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.739 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds