Wall clock time and date at job start Mon Mar 30 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35955 * 116.99520 * 2 1 4 4 C 1.38503 * 120.08162 * 90.00427 * 3 2 1 5 5 C 1.50704 * 119.97919 * 359.97438 * 4 3 2 6 6 C 1.38281 * 120.04869 * 179.72478 * 4 3 2 7 7 C 1.38467 * 120.21360 * 0.27622 * 6 4 3 8 8 Cl 1.73597 * 119.91519 * 179.97438 * 7 6 4 9 9 C 1.38192 * 120.16976 * 359.97438 * 7 6 4 10 10 C 1.38996 * 119.94961 * 0.02562 * 9 7 6 11 11 S 1.76200 * 120.10728 * 179.97438 * 10 9 7 12 12 C 1.76202 * 99.99957 * 6.90445 * 11 10 9 13 13 H 1.08001 * 119.99946 * 5.66289 * 12 11 10 14 14 C 1.38689 * 119.99826 * 185.67295 * 12 11 10 15 15 N 1.31656 * 119.99818 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 119.99960 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47405 * 90.00611 * 16 14 12 18 18 H 1.48508 * 109.47001 * 210.00452 * 16 14 12 19 19 H 1.48502 * 109.47715 * 330.00344 * 16 14 12 20 20 H 1.08992 * 109.47594 * 59.99832 * 1 2 3 21 21 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47061 * 299.99234 * 1 2 3 23 23 H 1.09003 * 109.46771 * 269.73027 * 5 4 3 24 24 H 1.09001 * 109.47228 * 149.72653 * 5 4 3 25 25 H 1.09001 * 109.46542 * 29.72305 * 5 4 3 26 26 H 1.07997 * 119.89193 * 180.29105 * 6 4 3 27 27 H 1.07994 * 120.02386 * 179.97438 * 9 7 6 28 28 H 0.96993 * 119.99789 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 2.3613 1.8300 1.1985 5 6 2.0195 1.1600 2.5044 6 6 2.9941 3.0595 1.1977 7 6 3.3100 3.6798 0.0007 8 17 4.1039 5.2236 0.0088 9 6 2.9950 3.0731 -1.2002 10 6 2.3590 1.8372 -1.2075 11 16 1.9548 1.0602 -2.7364 12 6 2.7522 2.1599 -3.8587 13 1 3.3647 2.9656 -3.4818 14 6 2.5931 1.9908 -5.2261 15 7 3.1893 2.8122 -6.0646 16 14 1.5340 0.5970 -5.8778 17 1 0.1328 1.0666 -6.0240 18 1 2.0500 0.1598 -7.2000 19 1 1.5772 -0.5436 -4.9279 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.0235 1.4691 2.8215 24 1 2.7479 1.4483 3.2623 25 1 2.0398 0.0780 2.3738 26 1 3.2430 3.5373 2.1337 27 1 3.2421 3.5592 -2.1324 28 1 3.0783 2.6938 -7.0209 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259060930.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:41 Heat of formation + Delta-G solvation = -44.633381 kcal Electronic energy + Delta-G solvation = -14692.912459 eV Core-core repulsion = 12053.432082 eV Total energy + Delta-G solvation = -2639.480376 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.94701 -38.47889 -37.16716 -34.85608 -33.73916 -31.09178 -28.77357 -27.86065 -27.06726 -23.82272 -22.58791 -20.26242 -18.52646 -17.55219 -17.45629 -17.15078 -16.54415 -16.05768 -15.17081 -14.90692 -14.59266 -14.43049 -13.88415 -13.69362 -13.56452 -13.20709 -13.10974 -12.94451 -12.63821 -12.44452 -12.25388 -12.02604 -11.66186 -11.30892 -10.90287 -10.84278 -10.51812 -9.47966 -8.74219 -8.61028 -6.37024 0.00327 0.18914 0.91806 1.13637 1.25816 1.38138 1.56118 2.13058 2.31238 2.49067 2.77938 2.94137 3.79513 4.13113 4.25175 4.33473 4.51362 4.57039 4.63504 4.68724 4.83160 4.88326 5.04840 5.20116 5.26489 5.43046 5.59477 5.65120 6.11498 6.53732 6.79012 8.50306 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.008690 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.253855 B = 3221.458111 C = 4616.296759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.337 6.337 3 C 0.082 3.918 4 C -0.071 4.071 5 C -0.102 4.102 6 C -0.120 4.120 7 C -0.020 4.020 8 Cl -0.070 7.070 9 C -0.144 4.144 10 C -0.098 4.098 11 S -0.018 6.018 12 C -0.563 4.563 13 H 0.078 0.922 14 C 0.050 3.950 15 N -0.906 5.906 16 Si 0.913 3.087 17 H -0.254 1.254 18 H -0.256 1.256 19 H -0.229 1.229 20 H 0.033 0.967 21 H 0.117 0.883 22 H 0.065 0.935 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.166 0.834 27 H 0.123 0.877 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -3.085 15.877 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.254 6.254 3 C 0.030 3.970 4 C -0.073 4.073 5 C -0.159 4.159 6 C -0.143 4.143 7 C -0.048 4.048 8 Cl -0.041 7.041 9 C -0.170 4.170 10 C -0.213 4.213 11 S 0.235 5.765 12 C -0.710 4.710 13 H 0.095 0.905 14 C -0.157 4.157 15 N -0.542 5.542 16 Si 0.734 3.266 17 H -0.178 1.178 18 H -0.180 1.180 19 H -0.153 1.153 20 H 0.052 0.948 21 H 0.135 0.865 22 H 0.083 0.917 23 H 0.107 0.893 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.184 0.816 27 H 0.140 0.860 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.525 -4.142 15.183 16.680 hybrid contribution 0.682 1.548 -1.028 1.979 sum -4.843 -2.594 14.155 15.184 Atomic orbital electron populations 1.23195 0.77787 1.04728 1.01003 1.85979 1.21259 1.23992 1.94153 1.18210 1.00940 0.87530 0.90277 1.20286 0.97925 0.93659 0.95476 1.20764 1.03270 1.00653 0.91194 1.20995 1.01367 0.95092 0.96822 1.20887 1.00556 0.88683 0.94703 1.98333 1.78710 1.28155 1.98946 1.21156 1.02188 0.95455 0.98164 1.22603 1.03031 0.97188 0.98470 1.82626 1.65154 1.33973 0.94785 1.22971 1.35699 1.18199 0.94090 0.90451 1.25689 0.95853 0.98306 0.95806 1.70026 1.42496 1.37710 1.03971 0.85926 0.79854 0.80397 0.80459 1.17833 1.18047 1.15296 0.94791 0.86457 0.91663 0.89313 0.89029 0.90789 0.81627 0.85981 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.13 113.37 1.26 1.94 15 2 O -0.34 -11.19 8.83 -93.04 -0.82 -12.01 15 3 C 0.08 2.96 5.70 22.65 0.13 3.09 15 4 C -0.07 -2.03 5.89 -19.79 -0.12 -2.15 15 5 C -0.10 -1.94 9.79 71.24 0.70 -1.24 15 6 C -0.12 -3.43 9.48 22.33 0.21 -3.22 15 7 C -0.02 -0.70 6.32 22.31 0.14 -0.56 15 8 Cl -0.07 -2.25 28.95 -2.72 -0.08 -2.33 15 9 C -0.14 -6.30 9.00 22.44 0.20 -6.10 15 10 C -0.10 -4.27 6.11 22.77 0.14 -4.13 15 11 S -0.02 -0.86 19.11 -56.49 -1.08 -1.94 15 12 C -0.56 -32.36 9.53 67.93 0.65 -31.72 15 13 H 0.08 4.82 5.21 -2.91 -0.02 4.80 15 14 C 0.05 2.86 5.50 84.83 0.47 3.33 15 15 N -0.91 -54.04 13.97 21.63 0.30 -53.74 15 16 Si 0.91 41.75 27.73 68.60 1.90 43.65 15 17 H -0.25 -11.15 7.11 99.48 0.71 -10.44 15 18 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 19 H -0.23 -10.07 6.74 99.48 0.67 -9.40 15 20 H 0.03 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.12 2.27 8.14 -2.38 -0.02 2.25 15 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 15 23 H 0.09 1.35 8.14 -2.39 -0.02 1.33 15 24 H 0.09 1.32 8.09 -2.39 -0.02 1.31 15 25 H 0.07 1.46 7.52 -2.39 -0.02 1.44 15 26 H 0.17 3.48 8.06 -2.91 -0.02 3.46 15 27 H 0.12 6.17 5.03 -2.91 -0.01 6.16 15 28 H 0.28 15.36 8.31 -92.71 -0.77 14.59 15 Total: -1.00 -64.92 272.76 5.15 -59.77 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.15 Total: 7.36 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 3.78 Total: -40.76 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.30 Total: -53.74 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.82 Total: -12.01 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.90 Total: 43.65 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -1.08 Total: -1.94 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.08 Total: -2.33 kcal Total: -64.92 5.15 -59.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259060930.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.133 kcal (2) G-P(sol) polarization free energy of solvation -64.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds