Wall clock time and date at job start Mon Mar 30 2020 06:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47005 * 2 1 4 4 C 1.35961 * 117.00144 * 179.97438 * 3 2 1 5 5 C 1.38789 * 119.96918 * 0.27759 * 4 3 2 6 6 C 1.37984 * 120.04883 * 180.23040 * 5 4 3 7 7 C 1.39123 * 119.98539 * 359.49509 * 6 5 4 8 8 S 1.76197 * 120.03527 * 180.27513 * 7 6 5 9 9 C 1.76203 * 100.00110 * 85.48783 * 8 7 6 10 10 H 1.08002 * 119.99818 * 5.11791 * 9 8 7 11 11 C 1.38679 * 119.99857 * 185.12066 * 9 8 7 12 12 N 1.31653 * 120.00258 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99640 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47249 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47066 * 119.99992 * 13 11 9 16 16 H 1.48504 * 109.47004 * 239.99698 * 13 11 9 17 17 C 1.39090 * 119.93625 * 0.24705 * 7 6 5 18 18 C 1.38097 * 119.95153 * 0.02562 * 17 7 6 19 19 Cl 1.73598 * 119.99320 * 180.02562 * 18 17 7 20 20 H 1.09006 * 109.46599 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47333 * 299.99543 * 1 2 3 22 22 H 1.08997 * 109.47416 * 60.00412 * 1 2 3 23 23 H 1.09004 * 109.47558 * 240.00070 * 2 1 3 24 24 H 1.09003 * 109.47193 * 120.00268 * 2 1 3 25 25 H 1.08004 * 119.97147 * 359.97438 * 5 4 3 26 26 H 1.08004 * 120.00660 * 179.76887 * 6 5 4 27 27 H 0.96998 * 119.99901 * 179.97438 * 12 11 9 28 28 H 1.07998 * 120.02590 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1991 0.4244 -0.0048 6 6 5.5672 0.6033 0.0006 7 6 6.1004 1.8883 0.0007 8 16 7.8473 2.1183 0.0002 9 6 8.1680 2.0233 -1.7298 10 1 7.3474 1.9443 -2.4276 11 6 9.4740 2.0499 -2.1954 12 7 10.4743 2.1456 -1.3448 13 14 9.8139 1.9498 -4.0295 14 1 8.5285 1.8484 -4.7664 15 1 10.5401 3.1695 -4.4656 16 1 10.6432 0.7514 -4.3146 17 6 5.2531 2.9914 0.0006 18 6 3.8842 2.8093 0.0009 19 17 2.8257 4.1852 0.0001 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.7853 -0.5732 -0.0089 26 1 6.2241 -0.2540 0.0002 27 1 11.3878 2.1638 -1.6705 28 1 5.6655 3.9896 0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259087743.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:19 Heat of formation + Delta-G solvation = -32.602036 kcal Electronic energy + Delta-G solvation = -14220.785348 eV Core-core repulsion = 11581.826690 eV Total energy + Delta-G solvation = -2638.958658 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.90605 -37.27489 -36.01143 -32.52376 -31.97812 -30.49725 -29.10044 -25.58134 -24.10886 -22.26117 -21.51723 -18.29994 -17.85804 -16.21830 -16.14630 -15.83069 -14.86849 -14.39942 -13.86506 -13.63003 -13.56933 -13.18228 -12.74497 -12.35658 -12.18695 -11.74504 -11.44597 -11.13244 -11.06366 -10.96123 -10.80631 -10.65679 -10.55583 -9.85400 -9.18444 -8.81746 -8.49018 -7.66734 -6.73089 -6.30130 -4.04529 1.51653 1.56288 2.46261 3.12649 3.17730 3.21830 3.27588 3.48560 3.90216 4.19708 4.79041 4.80653 5.01113 5.06353 5.11433 5.20767 5.44145 5.46432 5.63016 5.74762 5.79791 5.85708 6.07273 6.15536 6.47949 6.84376 6.92165 7.42443 7.56406 8.31674 9.15657 10.76112 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.027283 B = 0.005343 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.026513 B = 5239.007411 C = 5517.926165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.134 3.866 5 C -0.210 4.210 6 C -0.038 4.038 7 C -0.123 4.123 8 S -0.030 6.030 9 C -0.520 4.520 10 H 0.076 0.924 11 C 0.073 3.927 12 N -0.871 5.871 13 Si 0.920 3.080 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.279 1.279 17 C -0.036 4.036 18 C -0.076 4.076 19 Cl -0.073 7.073 20 H 0.076 0.924 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.131 0.869 26 H 0.135 0.865 27 H 0.269 0.731 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.420 -3.584 2.622 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.222 6.222 4 C 0.087 3.913 5 C -0.230 4.230 6 C -0.059 4.059 7 C -0.234 4.234 8 S 0.204 5.796 9 C -0.667 4.667 10 H 0.094 0.906 11 C -0.136 4.136 12 N -0.507 5.507 13 Si 0.746 3.254 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.058 4.058 18 C -0.105 4.105 19 Cl -0.045 7.045 20 H 0.095 0.905 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.148 0.852 26 H 0.153 0.847 27 H 0.079 0.921 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.688 -3.139 3.515 15.426 hybrid contribution -0.634 -0.441 -2.145 2.279 sum -15.322 -3.580 1.371 15.794 Atomic orbital electron populations 1.21755 0.92868 1.02606 1.03497 1.22772 0.95721 0.82244 1.01471 1.86121 1.18546 1.28922 1.88658 1.18628 0.82620 0.92451 0.97577 1.21179 0.94335 0.97191 1.10307 1.21680 0.93576 0.97540 0.93085 1.22667 1.03296 0.93558 1.03915 1.83611 0.90006 1.93707 1.12250 1.22901 0.95090 1.58271 0.90444 0.90559 1.24995 0.95010 0.94417 0.99188 1.70007 0.99310 1.47042 1.34296 0.86081 0.78526 0.77984 0.82799 1.19492 1.20452 1.20500 1.21585 0.89117 1.00350 0.94711 1.20233 0.91027 0.85665 1.13544 1.98322 1.66225 1.42557 1.97352 0.90530 0.91564 0.91567 0.92021 0.92016 0.85151 0.84690 0.92123 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 15 2 C 0.05 0.56 5.46 37.16 0.20 0.76 15 3 O -0.31 -4.52 9.59 -19.62 -0.19 -4.71 15 4 C 0.13 2.21 6.68 -39.13 -0.26 1.95 15 5 C -0.21 -3.31 9.03 -39.47 -0.36 -3.67 15 6 C -0.04 -0.70 9.79 -39.35 -0.39 -1.09 15 7 C -0.12 -2.61 5.46 -38.94 -0.21 -2.82 15 8 S -0.03 -0.76 21.41 -107.50 -2.30 -3.06 15 9 C -0.52 -14.41 9.46 30.90 0.29 -14.12 15 10 H 0.08 2.11 7.79 -52.49 -0.41 1.70 15 11 C 0.07 2.01 5.49 -17.47 -0.10 1.91 15 12 N -0.87 -25.10 13.22 55.48 0.73 -24.37 15 13 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 15 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 17 C -0.04 -0.70 9.57 -39.32 -0.38 -1.08 15 18 C -0.08 -1.35 6.33 -39.39 -0.25 -1.60 15 19 Cl -0.07 -1.17 28.49 -51.86 -1.48 -2.65 15 20 H 0.08 0.45 8.14 -51.93 -0.42 0.03 15 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.07 0.56 8.14 -51.93 -0.42 0.13 15 23 H 0.06 0.61 7.65 -51.93 -0.40 0.21 15 24 H 0.06 0.59 7.67 -51.93 -0.40 0.19 15 25 H 0.13 1.63 6.29 -52.48 -0.33 1.30 15 26 H 0.14 2.39 8.06 -52.48 -0.42 1.97 15 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 28 H 0.14 2.71 8.06 -52.49 -0.42 2.28 15 LS Contribution 279.39 15.07 4.21 4.21 Total: -1.00 -29.86 279.39 -7.89 -37.75 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -2.78 Total: -2.71 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -1.06 Total: -20.59 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.73 Total: -24.37 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.19 Total: -4.71 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.30 Total: -3.06 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.48 Total: -2.65 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.86 -7.89 -37.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259087743.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.152 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds