Wall clock time and date at job start Mon Mar 30 2020 06:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47005 * 2 1 4 4 C 1.35961 * 117.00144 * 179.97438 * 3 2 1 5 5 C 1.38789 * 119.96918 * 0.27759 * 4 3 2 6 6 C 1.37984 * 120.04883 * 180.23040 * 5 4 3 7 7 C 1.39123 * 119.98539 * 359.49509 * 6 5 4 8 8 S 1.76197 * 120.03527 * 180.27513 * 7 6 5 9 9 C 1.76203 * 100.00110 * 85.48783 * 8 7 6 10 10 H 1.08002 * 119.99818 * 5.11791 * 9 8 7 11 11 C 1.38679 * 119.99857 * 185.12066 * 9 8 7 12 12 N 1.31653 * 120.00258 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99640 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47249 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47066 * 119.99992 * 13 11 9 16 16 H 1.48504 * 109.47004 * 239.99698 * 13 11 9 17 17 C 1.39090 * 119.93625 * 0.24705 * 7 6 5 18 18 C 1.38097 * 119.95153 * 0.02562 * 17 7 6 19 19 Cl 1.73598 * 119.99320 * 180.02562 * 18 17 7 20 20 H 1.09006 * 109.46599 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47333 * 299.99543 * 1 2 3 22 22 H 1.08997 * 109.47416 * 60.00412 * 1 2 3 23 23 H 1.09004 * 109.47558 * 240.00070 * 2 1 3 24 24 H 1.09003 * 109.47193 * 120.00268 * 2 1 3 25 25 H 1.08004 * 119.97147 * 359.97438 * 5 4 3 26 26 H 1.08004 * 120.00660 * 179.76887 * 6 5 4 27 27 H 0.96998 * 119.99901 * 179.97438 * 12 11 9 28 28 H 1.07998 * 120.02590 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1991 0.4244 -0.0048 6 6 5.5672 0.6033 0.0006 7 6 6.1004 1.8883 0.0007 8 16 7.8473 2.1183 0.0002 9 6 8.1680 2.0233 -1.7298 10 1 7.3474 1.9443 -2.4276 11 6 9.4740 2.0499 -2.1954 12 7 10.4743 2.1456 -1.3448 13 14 9.8139 1.9498 -4.0295 14 1 8.5285 1.8484 -4.7664 15 1 10.5401 3.1695 -4.4656 16 1 10.6432 0.7514 -4.3146 17 6 5.2531 2.9914 0.0006 18 6 3.8842 2.8093 0.0009 19 17 2.8257 4.1852 0.0001 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.7853 -0.5732 -0.0089 26 1 6.2241 -0.2540 0.0002 27 1 11.3878 2.1638 -1.6705 28 1 5.6655 3.9896 0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259087743.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:18 Heat of formation + Delta-G solvation = -49.181128 kcal Electronic energy + Delta-G solvation = -14221.504272 eV Core-core repulsion = 11581.826690 eV Total energy + Delta-G solvation = -2639.677581 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.15402 -38.54890 -37.35302 -34.62149 -32.85825 -31.88763 -30.40323 -27.69984 -25.13794 -23.67145 -22.65965 -19.95087 -19.40420 -17.76443 -17.13647 -17.11864 -16.90226 -15.84530 -15.33928 -14.92380 -14.75556 -14.64601 -13.89799 -13.50334 -13.31511 -13.22723 -12.96914 -12.81344 -12.73235 -12.40383 -12.11928 -11.90174 -11.78208 -11.53454 -11.20726 -10.59923 -9.92695 -9.16948 -8.77172 -8.35258 -6.16096 0.07645 0.14339 1.08957 1.33593 1.38099 1.49387 1.70273 2.11246 2.24789 2.51408 2.96544 3.44127 3.70891 3.85957 4.08143 4.19424 4.27952 4.35717 4.41623 4.67191 4.70920 4.88116 4.96769 5.07637 5.26279 5.40224 5.42339 5.50763 6.19595 6.26046 7.04594 8.70331 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.027283 B = 0.005343 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.026513 B = 5239.007411 C = 5517.926165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.039 3.961 3 O -0.316 6.316 4 C 0.146 3.854 5 C -0.195 4.195 6 C -0.042 4.042 7 C -0.146 4.146 8 S -0.078 6.078 9 C -0.535 4.535 10 H 0.068 0.932 11 C 0.021 3.979 12 N -0.906 5.906 13 Si 0.990 3.010 14 H -0.267 1.267 15 H -0.272 1.272 16 H -0.269 1.269 17 C -0.043 4.043 18 C -0.086 4.086 19 Cl -0.059 7.059 20 H 0.103 0.897 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.171 0.829 26 H 0.139 0.861 27 H 0.273 0.727 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.480 -4.868 1.806 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 O -0.230 6.230 4 C 0.098 3.902 5 C -0.215 4.215 6 C -0.063 4.063 7 C -0.258 4.258 8 S 0.156 5.844 9 C -0.682 4.682 10 H 0.086 0.914 11 C -0.184 4.184 12 N -0.543 5.543 13 Si 0.812 3.188 14 H -0.191 1.191 15 H -0.197 1.197 16 H -0.194 1.194 17 C -0.065 4.065 18 C -0.115 4.115 19 Cl -0.030 7.030 20 H 0.122 0.878 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.188 0.812 26 H 0.156 0.844 27 H 0.083 0.917 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.772 -4.427 2.712 17.557 hybrid contribution -0.225 -0.059 -1.819 1.834 sum -16.997 -4.486 0.892 17.601 Atomic orbital electron populations 1.21794 0.91075 1.04304 1.03183 1.23219 0.97206 0.80341 1.02789 1.86149 1.17024 1.31872 1.87913 1.18720 0.83838 0.92006 0.95589 1.21452 0.92807 0.98915 1.08314 1.21719 0.95049 0.96448 0.93042 1.22359 1.00338 0.95408 1.07668 1.83512 0.94912 1.94226 1.11758 1.23121 0.95280 1.58367 0.91473 0.91414 1.25942 0.94648 0.93781 1.04009 1.70117 0.99802 1.47901 1.36477 0.85027 0.78461 0.78418 0.76859 1.19088 1.19708 1.19392 1.21434 0.90012 0.99658 0.95377 1.20240 0.90612 0.87003 1.13634 1.98321 1.65437 1.41961 1.97287 0.87814 0.91777 0.92017 0.90843 0.90432 0.81178 0.84361 0.91743 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 15 2 C 0.04 0.66 5.46 71.98 0.39 1.06 15 3 O -0.32 -8.29 9.59 -93.11 -0.89 -9.19 15 4 C 0.15 4.48 6.68 22.56 0.15 4.63 15 5 C -0.19 -5.63 9.03 22.34 0.20 -5.43 15 6 C -0.04 -1.51 9.79 22.42 0.22 -1.30 15 7 C -0.15 -6.28 5.46 22.69 0.12 -6.15 15 8 S -0.08 -4.12 21.41 -56.49 -1.21 -5.33 15 9 C -0.54 -30.38 9.46 67.93 0.64 -29.74 15 10 H 0.07 3.83 7.79 -2.91 -0.02 3.80 15 11 C 0.02 1.19 5.49 84.82 0.47 1.66 15 12 N -0.91 -53.22 13.22 21.63 0.29 -52.93 15 13 Si 0.99 43.48 29.55 68.60 2.03 45.50 15 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 15 17 C -0.04 -1.71 9.57 22.44 0.21 -1.49 15 18 C -0.09 -2.96 6.33 22.39 0.14 -2.82 15 19 Cl -0.06 -1.81 28.49 -2.72 -0.08 -1.89 15 20 H 0.10 0.79 8.14 -2.38 -0.02 0.77 15 21 H 0.06 0.86 8.14 -2.39 -0.02 0.84 15 22 H 0.06 0.85 8.14 -2.39 -0.02 0.83 15 23 H 0.07 1.13 7.65 -2.39 -0.02 1.11 15 24 H 0.08 1.13 7.67 -2.39 -0.02 1.11 15 25 H 0.17 3.51 6.29 -2.91 -0.02 3.49 15 26 H 0.14 4.84 8.06 -2.91 -0.02 4.81 15 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 15 28 H 0.14 5.36 8.06 -2.91 -0.02 5.33 15 Total: -1.00 -65.07 279.39 4.59 -60.47 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.17 Total: 4.08 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 3.29 Total: -40.72 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.29 Total: -52.93 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.89 Total: -9.19 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -1.21 Total: -5.33 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -65.07 4.59 -60.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259087743.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.289 kcal (2) G-P(sol) polarization free energy of solvation -65.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds