Wall clock time and date at job start Mon Mar 30 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35947 * 117.00094 * 2 1 4 4 C 1.38504 * 120.08462 * 359.97438 * 3 2 1 5 5 C 1.38277 * 120.05000 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.89355 * 179.97438 * 5 4 3 7 7 C 1.38472 * 120.21653 * 359.95211 * 5 4 3 8 8 Cl 1.73592 * 119.91575 * 180.02562 * 7 5 4 9 9 C 1.38190 * 120.16341 * 0.02891 * 7 5 4 10 10 C 1.38993 * 119.95605 * 359.74222 * 9 7 5 11 11 S 1.76198 * 120.11131 * 180.27969 * 10 9 7 12 12 C 1.76199 * 99.99999 * 6.88373 * 11 10 9 13 13 H 1.08007 * 119.99689 * 5.67108 * 12 11 10 14 14 C 1.38684 * 120.00355 * 185.66537 * 12 11 10 15 15 N 1.31655 * 119.99527 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00181 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47461 * 90.00211 * 16 14 12 18 18 H 1.48498 * 109.46928 * 209.99969 * 16 14 12 19 19 H 1.48498 * 109.47080 * 329.99724 * 16 14 12 20 20 H 1.09005 * 109.47320 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47484 * 60.00277 * 1 2 3 22 22 H 1.09004 * 109.47234 * 300.00345 * 1 2 3 23 23 H 1.08002 * 119.97713 * 0.02562 * 4 3 2 24 24 H 1.09004 * 109.47243 * 89.99416 * 6 5 4 25 25 H 1.08995 * 109.47032 * 209.99931 * 6 5 4 26 26 H 1.09007 * 109.46774 * 329.99474 * 6 5 4 27 27 H 1.08009 * 120.01939 * 179.97438 * 9 7 5 28 28 H 0.97002 * 119.99585 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2935 2.3740 -0.0005 5 6 1.9221 3.6057 -0.0011 6 6 1.0997 4.8686 -0.0022 7 6 3.3046 3.6825 -0.0001 8 17 4.0856 5.2329 -0.0001 9 6 4.0642 2.5281 0.0009 10 6 3.4397 1.2864 0.0062 11 16 4.4042 -0.1881 0.0149 12 6 6.0131 0.4999 0.2216 13 1 6.1293 1.5602 0.3913 14 6 7.1303 -0.3200 0.1664 15 7 6.9887 -1.6124 -0.0409 16 14 8.8359 0.4093 0.3863 17 1 9.2006 0.3906 1.8257 18 1 9.8202 -0.3925 -0.3841 19 1 8.8430 1.8096 -0.1080 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.2149 2.3187 -0.0005 24 1 0.9009 5.1737 1.0252 25 1 1.6475 5.6583 -0.5163 26 1 0.1559 4.6870 -0.5165 27 1 5.1425 2.5907 0.0012 28 1 7.7701 -2.1859 -0.0791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259107794.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:38 Heat of formation + Delta-G solvation = -29.090211 kcal Electronic energy + Delta-G solvation = -14553.702637 eV Core-core repulsion = 11914.896263 eV Total energy + Delta-G solvation = -2638.806374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.56581 -37.31742 -35.67673 -32.76750 -32.32262 -29.47758 -27.57606 -26.43234 -25.53251 -21.80819 -21.24279 -18.38139 -17.08424 -16.18504 -15.79281 -15.36254 -15.15055 -14.12984 -13.73823 -13.62225 -13.59457 -12.91844 -12.24890 -12.19989 -12.02130 -11.58843 -11.50367 -11.22738 -11.19789 -10.97142 -10.69387 -10.34247 -10.23507 -9.77268 -9.46329 -8.71730 -8.62837 -7.80557 -6.50391 -6.46405 -4.18845 1.72384 1.82928 2.65466 3.07792 3.13481 3.20127 3.35729 3.75336 4.02791 4.09313 4.92426 5.05865 5.13790 5.28134 5.36027 5.36804 5.47945 5.67758 5.80798 5.93277 5.96561 6.17387 6.35458 6.59714 6.63433 6.87779 7.14793 7.47261 7.82839 8.14114 8.98154 10.56607 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.008192 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.795861 B = 3417.152690 C = 4894.573731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.303 6.303 3 C 0.116 3.884 4 C -0.179 4.179 5 C -0.093 4.093 6 C -0.106 4.106 7 C -0.040 4.040 8 Cl -0.092 7.092 9 C -0.106 4.106 10 C -0.107 4.107 11 S 0.087 5.913 12 C -0.559 4.559 13 H 0.093 0.907 14 C 0.080 3.920 15 N -0.863 5.863 16 Si 0.922 3.078 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.267 1.267 20 H 0.095 0.905 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.126 0.874 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.152 0.848 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.502 7.811 0.007 13.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.063 3.937 4 C -0.201 4.201 5 C -0.101 4.101 6 C -0.162 4.162 7 C -0.068 4.068 8 Cl -0.063 7.063 9 C -0.134 4.134 10 C -0.224 4.224 11 S 0.344 5.656 12 C -0.706 4.706 13 H 0.110 0.890 14 C -0.130 4.130 15 N -0.496 5.496 16 Si 0.748 3.252 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.191 1.191 20 H 0.113 0.887 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.144 0.856 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.169 0.831 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.361 6.119 -0.119 12.034 hybrid contribution 1.203 1.964 0.228 2.314 sum -9.158 8.083 0.108 12.215 Atomic orbital electron populations 1.22966 0.79567 1.03371 1.00709 1.86169 1.20145 1.26518 1.88776 1.18436 0.90706 0.84135 1.00377 1.20680 0.98952 0.90950 1.09474 1.19144 0.91483 0.94952 1.04478 1.20696 0.98790 0.94834 1.01914 1.20534 0.91832 0.85469 1.09007 1.98294 1.81205 1.29538 1.97260 1.21126 1.01197 0.88879 1.02209 1.21986 0.94031 1.01211 1.05149 1.83715 0.99062 1.00802 1.81989 1.23417 0.91607 0.98072 1.57503 0.88960 1.25078 0.99981 0.94668 0.93320 1.70007 1.31608 1.03643 1.44321 0.86082 0.81022 0.79415 0.78727 1.19838 1.20467 1.19091 0.88660 0.93175 0.93172 0.85596 0.91668 0.91389 0.92093 0.83108 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.36 15 2 O -0.30 -5.61 9.87 -19.57 -0.19 -5.80 15 3 C 0.12 2.29 6.69 -38.99 -0.26 2.03 15 4 C -0.18 -2.97 8.68 -39.47 -0.34 -3.31 15 5 C -0.09 -1.55 5.89 -104.52 -0.62 -2.16 15 6 C -0.11 -1.35 9.61 36.01 0.35 -1.00 15 7 C -0.04 -0.74 6.31 -39.51 -0.25 -0.99 15 8 Cl -0.09 -1.50 27.27 -51.86 -1.41 -2.91 15 9 C -0.11 -2.28 9.00 -39.32 -0.35 -2.63 15 10 C -0.11 -2.42 6.11 -38.81 -0.24 -2.66 15 11 S 0.09 2.24 21.14 -107.50 -2.27 -0.03 15 12 C -0.56 -15.19 8.99 30.90 0.28 -14.91 15 13 H 0.09 2.41 4.97 -52.48 -0.26 2.15 15 14 C 0.08 2.16 5.49 -17.46 -0.10 2.06 15 15 N -0.86 -24.33 13.22 55.48 0.73 -23.59 15 16 Si 0.92 20.60 29.55 -169.99 -5.02 15.57 15 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 20 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.05 0.55 7.66 -51.93 -0.40 0.15 15 22 H 0.05 0.55 7.66 -51.93 -0.40 0.15 15 23 H 0.13 1.66 6.29 -52.49 -0.33 1.33 15 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.07 0.85 6.89 -51.93 -0.36 0.49 15 26 H 0.06 0.66 8.08 -51.93 -0.42 0.24 15 27 H 0.15 3.41 5.03 -52.48 -0.26 3.15 15 28 H 0.27 7.17 8.31 -40.82 -0.34 6.84 15 LS Contribution 270.15 15.07 4.07 4.07 Total: -1.00 -29.23 270.15 -7.05 -36.28 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -2.41 Total: -1.36 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -0.54 Total: -22.22 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.73 Total: -23.59 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.19 Total: -5.80 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.27 Total: -0.03 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.41 Total: -2.91 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.23 -7.05 -36.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259107794.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.190 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds