Wall clock time and date at job start Mon Mar 30 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35947 * 117.00094 * 2 1 4 4 C 1.38504 * 120.08462 * 359.97438 * 3 2 1 5 5 C 1.38277 * 120.05000 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.89355 * 179.97438 * 5 4 3 7 7 C 1.38472 * 120.21653 * 359.95211 * 5 4 3 8 8 Cl 1.73592 * 119.91575 * 180.02562 * 7 5 4 9 9 C 1.38190 * 120.16341 * 0.02891 * 7 5 4 10 10 C 1.38993 * 119.95605 * 359.74222 * 9 7 5 11 11 S 1.76198 * 120.11131 * 180.27969 * 10 9 7 12 12 C 1.76199 * 99.99999 * 6.88373 * 11 10 9 13 13 H 1.08007 * 119.99689 * 5.67108 * 12 11 10 14 14 C 1.38684 * 120.00355 * 185.66537 * 12 11 10 15 15 N 1.31655 * 119.99527 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00181 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47461 * 90.00211 * 16 14 12 18 18 H 1.48498 * 109.46928 * 209.99969 * 16 14 12 19 19 H 1.48498 * 109.47080 * 329.99724 * 16 14 12 20 20 H 1.09005 * 109.47320 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47484 * 60.00277 * 1 2 3 22 22 H 1.09004 * 109.47234 * 300.00345 * 1 2 3 23 23 H 1.08002 * 119.97713 * 0.02562 * 4 3 2 24 24 H 1.09004 * 109.47243 * 89.99416 * 6 5 4 25 25 H 1.08995 * 109.47032 * 209.99931 * 6 5 4 26 26 H 1.09007 * 109.46774 * 329.99474 * 6 5 4 27 27 H 1.08009 * 120.01939 * 179.97438 * 9 7 5 28 28 H 0.97002 * 119.99585 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2935 2.3740 -0.0005 5 6 1.9221 3.6057 -0.0011 6 6 1.0997 4.8686 -0.0022 7 6 3.3046 3.6825 -0.0001 8 17 4.0856 5.2329 -0.0001 9 6 4.0642 2.5281 0.0009 10 6 3.4397 1.2864 0.0062 11 16 4.4042 -0.1881 0.0149 12 6 6.0131 0.4999 0.2216 13 1 6.1293 1.5602 0.3913 14 6 7.1303 -0.3200 0.1664 15 7 6.9887 -1.6124 -0.0409 16 14 8.8359 0.4093 0.3863 17 1 9.2006 0.3906 1.8257 18 1 9.8202 -0.3925 -0.3841 19 1 8.8430 1.8096 -0.1080 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.2149 2.3187 -0.0005 24 1 0.9009 5.1737 1.0252 25 1 1.6475 5.6583 -0.5163 26 1 0.1559 4.6870 -0.5165 27 1 5.1425 2.5907 0.0012 28 1 7.7701 -2.1859 -0.0791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259107794.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:38 Heat of formation + Delta-G solvation = -46.341091 kcal Electronic energy + Delta-G solvation = -14554.450692 eV Core-core repulsion = 11914.896263 eV Total energy + Delta-G solvation = -2639.554428 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.99261 -38.70928 -37.07005 -34.76583 -33.72869 -30.92510 -28.69042 -28.11772 -27.11370 -23.28407 -22.65492 -20.20568 -18.57015 -17.70322 -17.23535 -17.07489 -16.60907 -15.74906 -15.22797 -14.94491 -14.83884 -14.61906 -13.49922 -13.46074 -13.37220 -13.01250 -12.96077 -12.86303 -12.78305 -12.36839 -12.17747 -11.95459 -11.63967 -11.37550 -11.25936 -10.58105 -10.29757 -9.30119 -8.49362 -8.33508 -6.23817 0.24332 0.31867 1.20629 1.27584 1.37519 1.45340 1.61322 2.19269 2.47816 2.58862 2.90964 3.18274 3.82037 3.94899 4.19977 4.41171 4.47599 4.54453 4.67706 4.74568 4.82966 4.87383 5.00901 5.12543 5.26779 5.39569 5.49112 5.72972 6.11402 6.50655 6.94793 8.59571 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.008192 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.795861 B = 3417.152690 C = 4894.573731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.121 3.879 4 C -0.173 4.173 5 C -0.070 4.070 6 C -0.107 4.107 7 C -0.058 4.058 8 Cl -0.071 7.071 9 C -0.114 4.114 10 C -0.135 4.135 11 S 0.003 5.997 12 C -0.570 4.570 13 H 0.092 0.908 14 C 0.027 3.973 15 N -0.902 5.902 16 Si 0.991 3.009 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.261 1.261 20 H 0.114 0.886 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.172 0.828 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.129 0.871 28 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 10.305 0.135 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.068 3.932 4 C -0.193 4.193 5 C -0.075 4.075 6 C -0.163 4.163 7 C -0.087 4.087 8 Cl -0.042 7.042 9 C -0.141 4.141 10 C -0.251 4.251 11 S 0.256 5.744 12 C -0.717 4.717 13 H 0.110 0.890 14 C -0.179 4.179 15 N -0.537 5.537 16 Si 0.812 3.188 17 H -0.190 1.190 18 H -0.196 1.196 19 H -0.185 1.185 20 H 0.132 0.868 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.189 0.811 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.147 0.853 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.581 8.685 0.009 15.287 hybrid contribution 1.565 1.372 0.186 2.090 sum -11.016 10.057 0.195 14.917 Atomic orbital electron populations 1.23395 0.76267 1.05514 1.02583 1.86157 1.23607 1.26349 1.88433 1.18633 0.89897 0.85790 0.98872 1.21146 1.00968 0.89490 1.07718 1.19771 0.90930 0.96910 0.99927 1.20846 0.99362 0.92458 1.03638 1.20638 0.92846 0.85550 1.09635 1.98295 1.81137 1.27622 1.97194 1.21027 1.00522 0.89944 1.02583 1.21866 0.95151 0.99595 1.08464 1.83635 1.00388 1.04722 1.85666 1.23637 0.92204 0.98158 1.57710 0.89007 1.26041 1.03908 0.94990 0.92944 1.70127 1.32688 1.04971 1.45934 0.85053 0.76020 0.78719 0.78971 1.19042 1.19558 1.18529 0.86757 0.91108 0.91149 0.81107 0.89728 0.91051 0.89036 0.85319 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 15 2 O -0.33 -12.03 9.87 -92.96 -0.92 -12.94 15 3 C 0.12 4.63 6.69 22.65 0.15 4.79 15 4 C -0.17 -5.08 8.68 22.34 0.19 -4.88 15 5 C -0.07 -2.05 5.89 -19.80 -0.12 -2.17 15 6 C -0.11 -2.14 9.61 71.24 0.68 -1.46 15 7 C -0.06 -2.08 6.31 22.31 0.14 -1.94 15 8 Cl -0.07 -2.19 27.27 -2.72 -0.07 -2.27 15 9 C -0.11 -4.98 9.00 22.44 0.20 -4.78 15 10 C -0.14 -6.29 6.11 22.77 0.14 -6.15 15 11 S 0.00 0.17 21.14 -56.49 -1.19 -1.03 15 12 C -0.57 -32.61 8.99 67.93 0.61 -32.00 15 13 H 0.09 5.07 4.97 -2.91 -0.01 5.05 15 14 C 0.03 1.53 5.49 84.83 0.47 1.99 15 15 N -0.90 -53.18 13.22 21.63 0.29 -52.89 15 16 Si 0.99 43.37 29.55 68.60 2.03 45.40 15 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 19 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 20 H 0.11 2.03 8.14 -2.38 -0.02 2.01 15 21 H 0.07 1.25 7.66 -2.39 -0.02 1.23 15 22 H 0.07 1.25 7.66 -2.38 -0.02 1.23 15 23 H 0.17 3.47 6.29 -2.91 -0.02 3.45 15 24 H 0.08 1.49 8.14 -2.38 -0.02 1.47 15 25 H 0.07 1.44 6.89 -2.39 -0.02 1.43 15 26 H 0.09 1.36 8.08 -2.38 -0.02 1.34 15 27 H 0.13 6.12 5.03 -2.91 -0.01 6.10 15 28 H 0.28 15.07 8.31 -92.71 -0.77 14.30 15 Total: -1.00 -67.58 270.15 4.90 -62.68 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.19 Total: 6.18 kcal Atomic # 6 Polarization: -48.71 SS G_CDS: 3.58 Total: -45.13 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.29 Total: -52.89 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.92 Total: -12.94 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.19 Total: -1.03 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.07 Total: -2.27 kcal Total: -67.58 4.90 -62.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259107794.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.339 kcal (2) G-P(sol) polarization free energy of solvation -67.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds