Wall clock time and date at job start Mon Mar 30 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36028 * 116.99882 * 2 1 4 4 C 1.38681 * 119.97759 * 359.72097 * 3 2 1 5 5 C 1.38100 * 120.03405 * 180.28068 * 4 3 2 6 6 C 1.38938 * 119.99862 * 0.02562 * 5 4 3 7 7 S 1.76195 * 120.02463 * 179.97438 * 6 5 4 8 8 C 1.81404 * 103.00047 * 0.02634 * 7 6 5 9 9 C 1.50698 * 109.47398 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99652 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00086 * 179.97438 * 9 8 7 12 12 N 1.31521 * 119.99749 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46860 * 60.00173 * 13 11 9 15 15 H 1.48505 * 109.47091 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47166 * 300.00070 * 13 11 9 17 17 C 1.38899 * 119.95693 * 359.97438 * 6 5 4 18 18 C 1.38199 * 119.96276 * 0.02562 * 17 6 5 19 19 Cl 1.73601 * 119.99957 * 179.97438 * 18 17 6 20 20 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47195 * 300.00120 * 1 2 3 22 22 H 1.09002 * 109.47254 * 60.00126 * 1 2 3 23 23 H 1.07993 * 119.98814 * 0.28250 * 4 3 2 24 24 H 1.07998 * 120.00202 * 179.97438 * 5 4 3 25 25 H 1.09005 * 109.46832 * 299.99717 * 8 7 6 26 26 H 1.09004 * 109.46997 * 59.99256 * 8 7 6 27 27 H 0.97000 * 119.99287 * 179.97438 * 12 11 9 28 28 H 1.08002 * 120.02027 * 180.02562 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2907 2.3748 -0.0059 5 6 1.9165 3.6059 -0.0117 6 6 3.3039 3.6799 -0.0123 7 16 4.1029 5.2503 -0.0205 8 6 2.7127 6.4156 -0.0254 9 6 3.2403 7.8271 -0.0320 10 1 4.3055 8.0054 -0.0327 11 6 2.3632 8.8910 -0.0372 12 7 1.0661 8.6737 -0.0369 13 14 3.0173 10.6406 -0.0446 14 1 3.8469 10.8538 -1.2578 15 1 1.8792 11.5946 -0.0501 16 1 3.8458 10.8646 1.1673 17 6 4.0606 2.5152 -0.0064 18 6 3.4327 1.2841 -0.0006 19 17 4.3776 -0.1722 0.0061 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 0.2123 2.3176 -0.0058 24 1 1.3274 4.5111 -0.0167 25 1 2.1037 6.2508 -0.9143 26 1 2.1045 6.2594 0.8657 27 1 0.4491 9.4222 -0.0401 28 1 5.1392 2.5716 -0.0065 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259204654.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:24 Heat of formation + Delta-G solvation = -45.720638 kcal Electronic energy + Delta-G solvation = -14107.715840 eV Core-core repulsion = 11468.188316 eV Total energy + Delta-G solvation = -2639.527523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.14516 -38.49807 -37.41967 -35.35021 -32.18735 -31.34276 -30.62219 -28.22052 -25.40004 -23.77561 -23.37302 -19.57673 -18.75654 -18.14761 -17.41143 -16.76986 -16.76486 -15.89685 -15.63837 -15.05808 -14.78977 -14.77761 -14.31303 -14.20658 -13.77570 -13.03614 -12.81252 -12.64435 -12.62965 -12.29824 -12.25445 -12.03987 -11.84431 -11.62412 -10.95424 -10.77115 -10.20753 -9.82896 -8.35921 -8.17537 -6.49691 -0.00687 0.10558 0.70357 1.16088 1.41731 1.43903 1.52559 1.81477 2.23421 2.35969 2.41161 2.99711 3.65958 3.81429 4.08799 4.32078 4.39766 4.41288 4.58634 4.64947 4.76470 4.86777 4.88447 5.02530 5.15087 5.37994 5.53964 5.82472 6.22120 6.56896 7.19034 8.75861 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.037737 B = 0.004593 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.795911 B = 6094.697049 C = 6816.045059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.317 6.317 3 C 0.124 3.876 4 C -0.169 4.169 5 C -0.100 4.100 6 C -0.113 4.113 7 S -0.153 6.153 8 C 0.077 3.923 9 C -0.543 4.543 10 H 0.066 0.934 11 C 0.020 3.980 12 N -0.921 5.921 13 Si 0.975 3.025 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.266 1.266 17 C -0.062 4.062 18 C -0.059 4.059 19 Cl -0.049 7.049 20 H 0.126 0.874 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.165 0.835 24 H 0.124 0.876 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.272 0.728 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 -15.722 0.076 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.230 6.230 3 C 0.075 3.925 4 C -0.189 4.189 5 C -0.124 4.124 6 C -0.226 4.226 7 S 0.092 5.908 8 C -0.070 4.070 9 C -0.582 4.582 10 H 0.084 0.916 11 C -0.182 4.182 12 N -0.559 5.559 13 Si 0.798 3.202 14 H -0.191 1.191 15 H -0.202 1.202 16 H -0.191 1.191 17 C -0.087 4.087 18 C -0.088 4.088 19 Cl -0.020 7.020 20 H 0.144 0.856 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.183 0.817 24 H 0.142 0.858 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.250 -15.584 0.073 15.586 hybrid contribution -1.418 0.739 0.000 1.599 sum -1.168 -14.845 0.073 14.891 Atomic orbital electron populations 1.23442 0.76040 1.06041 1.02465 1.86146 1.23663 1.24900 1.88333 1.18634 0.90345 0.85657 0.97904 1.21294 1.01444 0.90104 1.06053 1.21292 0.93213 0.98856 0.99051 1.21823 0.96553 0.97431 1.06836 1.85156 1.18496 0.95600 1.91514 1.21035 0.92344 0.94769 0.98862 1.20925 0.93870 0.89721 1.53708 0.91581 1.25859 0.94866 1.03912 0.93566 1.70034 1.02639 1.33737 1.49484 0.85344 0.78077 0.77389 0.79375 1.19087 1.20163 1.19075 1.20546 1.00600 0.87965 0.99564 1.20048 0.89186 0.88363 1.11215 1.98340 1.71644 1.34944 1.97104 0.85572 0.91598 0.91595 0.81741 0.85842 0.95694 0.95699 0.91942 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 15 2 O -0.32 -7.55 9.95 -93.87 -0.93 -8.48 15 3 C 0.12 3.46 6.68 22.51 0.15 3.61 15 4 C -0.17 -4.74 9.03 22.34 0.20 -4.54 15 5 C -0.10 -3.51 9.36 22.40 0.21 -3.30 15 6 C -0.11 -4.19 6.11 22.60 0.14 -4.05 15 7 S -0.15 -6.60 21.84 -56.49 -1.23 -7.83 15 8 C 0.08 3.96 4.09 71.24 0.29 4.25 15 9 C -0.54 -30.01 9.13 25.60 0.23 -29.78 15 10 H 0.07 3.59 7.71 -2.91 -0.02 3.57 15 11 C 0.02 1.07 5.46 84.65 0.46 1.53 15 12 N -0.92 -52.30 13.29 21.45 0.28 -52.02 15 13 Si 0.98 42.33 29.54 68.60 2.03 44.35 15 14 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 15 H -0.28 -11.57 7.11 99.48 0.71 -10.86 15 16 H -0.27 -11.19 7.11 99.48 0.71 -10.49 15 17 C -0.06 -1.99 9.57 22.42 0.21 -1.77 15 18 C -0.06 -1.75 6.33 22.40 0.14 -1.60 15 19 Cl -0.05 -1.27 28.49 -2.72 -0.08 -1.35 15 20 H 0.13 1.20 8.14 -2.39 -0.02 1.18 15 21 H 0.07 0.87 7.67 -2.39 -0.02 0.85 15 22 H 0.07 0.87 7.65 -2.39 -0.02 0.86 15 23 H 0.17 3.55 6.29 -2.91 -0.02 3.53 15 24 H 0.12 4.76 5.87 -2.91 -0.02 4.74 15 25 H 0.02 1.34 7.74 -2.39 -0.02 1.32 15 26 H 0.02 1.33 7.75 -2.39 -0.02 1.32 15 27 H 0.27 14.43 8.31 -92.71 -0.77 13.66 15 28 H 0.15 4.41 8.06 -2.91 -0.02 4.38 15 Total: -1.00 -60.49 275.18 4.40 -56.09 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.18 Total: 3.56 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.16 Total: -34.33 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.28 Total: -52.02 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.93 Total: -8.48 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -1.23 Total: -7.83 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -60.49 4.40 -56.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259204654.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.373 kcal (2) G-P(sol) polarization free energy of solvation -60.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds