Wall clock time and date at job start Mon Mar 30 2020 06:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.50702 * 113.00018 * 48.17629 * 10 9 7 12 12 C 1.33342 * 125.18641 * 180.02562 * 11 10 9 13 13 C 1.38472 * 114.92872 * 179.97438 * 12 11 10 14 14 C 1.33505 * 114.88508 * 359.97438 * 13 12 11 15 15 Cl 1.73595 * 125.20878 * 180.02562 * 14 13 12 16 16 S 1.75872 * 125.18776 * 359.69235 * 11 10 9 17 17 C 1.54029 * 113.81516 * 276.18580 * 10 9 7 18 18 O 1.44175 * 85.52054 * 223.19704 * 17 10 9 19 19 C 1.44179 * 93.33846 * 24.19620 * 18 17 10 20 20 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 22 22 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 23 23 H 1.08005 * 122.54025 * 359.97438 * 12 11 10 24 24 H 1.08004 * 122.55869 * 180.02562 * 13 12 11 25 25 H 1.09003 * 113.86832 * 337.34752 * 17 10 9 26 26 H 1.09004 * 113.86410 * 109.05076 * 17 10 9 27 27 H 1.09006 * 113.86665 * 221.66165 * 19 18 17 28 28 H 1.08993 * 113.86990 * 89.95310 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 3.3312 -3.5084 1.0332 12 6 4.3212 -4.3768 1.2427 13 6 5.2044 -4.0234 2.2488 14 6 4.9306 -2.8664 2.8560 15 17 5.8580 -2.1698 4.1476 16 16 3.4906 -2.1524 2.1418 17 6 2.7650 -4.0361 -1.4015 18 8 2.5720 -5.4026 -0.9844 19 6 1.5785 -5.0506 -0.0006 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5568 -0.8902 22 1 0.6248 -2.5571 0.8897 23 1 4.4262 -5.2870 0.6708 24 1 6.0508 -4.6366 2.5211 25 1 2.1072 -3.7256 -2.2133 26 1 3.8085 -3.7698 -1.5704 27 1 1.6809 -5.5890 0.9417 28 1 0.5585 -5.0499 -0.3845 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259398351.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:52 Heat of formation + Delta-G solvation = 6.866205 kcal Electronic energy + Delta-G solvation = -15076.617231 eV Core-core repulsion = 12439.370044 eV Total energy + Delta-G solvation = -2637.247187 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.24607 -37.07645 -35.96141 -33.75183 -31.46322 -28.06552 -26.42549 -25.96985 -23.42358 -22.70139 -19.80510 -18.46439 -16.94703 -16.31656 -15.45097 -15.20132 -15.08513 -14.63631 -14.03412 -13.26377 -12.72756 -12.56146 -12.42973 -12.34879 -12.07768 -11.44434 -11.22584 -11.01808 -10.85265 -10.69668 -10.47321 -10.17444 -9.97364 -9.40921 -9.34780 -8.95612 -8.60275 -7.87792 -7.65416 -6.28816 -4.29577 1.45502 1.85577 2.70725 2.86155 3.15276 3.22716 3.26412 3.30446 4.23735 4.27033 5.05748 5.16443 5.19753 5.71277 5.71911 5.83050 5.94245 6.04353 6.16005 6.44950 6.48657 6.56786 6.62728 6.79521 6.99605 7.34563 7.42737 7.68437 8.06764 8.73511 9.32344 10.80163 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.011051 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.483219 B = 2533.088216 C = 4053.550772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.022 3.978 10 C -0.054 4.054 11 C -0.131 4.131 12 C -0.151 4.151 13 C -0.134 4.134 14 C -0.212 4.212 15 Cl -0.050 7.050 16 S 0.261 5.739 17 C 0.058 3.942 18 O -0.391 6.391 19 C 0.046 3.954 20 H 0.267 0.733 21 H 0.032 0.968 22 H 0.028 0.972 23 H 0.140 0.860 24 H 0.128 0.872 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.836 -5.724 2.930 8.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.088 0.912 9 C -0.015 4.015 10 C -0.056 4.056 11 C -0.250 4.250 12 C -0.181 4.181 13 C -0.167 4.167 14 C -0.354 4.354 15 Cl -0.022 7.022 16 S 0.533 5.467 17 C -0.019 4.019 18 O -0.310 6.310 19 C -0.032 4.032 20 H 0.077 0.923 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.158 0.842 24 H 0.145 0.855 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.128 -4.460 3.348 7.576 hybrid contribution 1.338 -0.142 -0.104 1.349 sum 6.466 -4.602 3.244 8.574 Atomic orbital electron populations 1.69936 1.06236 1.27543 1.47486 1.24991 0.94724 0.99385 0.94111 0.86757 0.80010 0.82810 0.79474 1.19740 1.20951 1.19327 1.21202 0.93328 0.90687 1.51239 0.91234 1.19310 0.93238 0.90382 0.98591 1.22080 0.93921 0.97631 0.91973 1.24032 1.00581 0.98314 1.02066 1.19851 0.95659 1.02051 1.00519 1.19913 1.02024 0.96291 0.98472 1.26855 1.06569 1.01858 1.00158 1.98291 1.72354 1.83858 1.47683 1.86029 1.18378 1.18110 1.24172 1.24041 1.01666 0.80230 0.95979 1.89536 1.57650 1.27407 1.56396 1.24128 0.92932 0.93637 0.92504 0.92341 0.94955 0.95412 0.84220 0.85451 0.89647 0.89731 0.89831 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.70 13.29 55.43 0.74 -22.96 15 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 15 3 Si 0.88 19.99 29.54 -169.99 -5.02 14.97 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 7 C -0.52 -12.80 6.74 -34.44 -0.23 -13.03 15 8 H 0.07 1.69 5.93 -52.16 -0.31 1.39 15 9 C 0.02 0.50 4.33 -27.88 -0.12 0.38 15 10 C -0.05 -1.03 1.04 -154.58 -0.16 -1.19 15 11 C -0.13 -2.49 5.16 -36.02 -0.19 -2.67 15 12 C -0.15 -2.60 9.32 -41.21 -0.38 -2.98 15 13 C -0.13 -2.22 10.13 -41.15 -0.42 -2.64 15 14 C -0.21 -3.73 7.10 29.08 0.21 -3.52 15 15 Cl -0.05 -0.79 29.29 -51.86 -1.52 -2.31 15 16 S 0.26 5.14 19.28 -107.50 -2.07 3.07 15 17 C 0.06 1.03 8.16 37.60 0.31 1.34 15 18 O -0.39 -6.91 11.43 -35.23 -0.40 -7.32 15 19 C 0.05 0.77 8.16 37.61 0.31 1.08 15 20 H 0.27 6.89 8.31 -40.82 -0.34 6.56 15 21 H 0.03 0.77 7.93 -51.93 -0.41 0.36 15 22 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.14 2.28 7.30 -52.48 -0.38 1.90 15 24 H 0.13 1.84 8.06 -52.48 -0.42 1.41 15 25 H 0.09 1.46 7.96 -51.93 -0.41 1.05 15 26 H 0.08 1.44 8.09 -51.93 -0.42 1.02 15 27 H 0.08 1.30 8.09 -51.93 -0.42 0.88 15 28 H 0.08 1.29 8.10 -51.93 -0.42 0.87 15 LS Contribution 267.64 15.07 4.03 4.03 Total: -1.00 -25.81 267.64 -7.78 -33.59 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -2.76 Total: -1.63 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -0.78 Total: -21.46 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: 0.74 Total: -22.96 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.40 Total: -7.32 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 5.14 SS G_CDS: -2.07 Total: 3.07 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.52 Total: -2.31 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.81 -7.78 -33.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259398351.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.461 kcal (2) G-P(sol) polarization free energy of solvation -25.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds