Wall clock time and date at job start Mon Mar 30 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34501 * 125.78176 * 2 1 4 4 C 1.41394 * 106.85403 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.58552 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46849 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.46812 * 300.00051 * 5 4 3 8 8 C 1.50697 * 109.47239 * 59.99926 * 5 4 3 9 9 H 1.08009 * 119.99867 * 354.36635 * 8 5 4 10 10 C 1.37875 * 120.00180 * 174.35508 * 8 5 4 11 11 N 1.31508 * 120.00164 * 156.91364 * 10 8 5 12 12 Si 1.86804 * 119.99909 * 336.92269 * 10 8 5 13 13 H 1.48504 * 109.46956 * 179.97438 * 12 10 8 14 14 H 1.48491 * 109.47504 * 59.99417 * 12 10 8 15 15 H 1.48503 * 109.46941 * 299.99390 * 12 10 8 16 16 C 1.34624 * 106.83072 * 0.26484 * 4 3 2 17 17 Br 1.89100 * 125.79926 * 179.70298 * 16 4 3 18 18 O 1.34309 * 108.40232 * 359.57209 * 16 4 3 19 19 H 1.09000 * 109.47102 * 89.99600 * 1 2 3 20 20 H 1.09001 * 109.46935 * 209.99760 * 1 2 3 21 21 H 1.08994 * 109.46834 * 329.99593 * 1 2 3 22 22 H 1.07998 * 126.57605 * 0.04894 * 3 2 1 23 23 H 1.09005 * 109.47353 * 293.21369 * 7 5 4 24 24 H 1.08999 * 109.47601 * 53.21888 * 7 5 4 25 25 H 1.09003 * 109.47047 * 173.21599 * 7 5 4 26 26 H 0.97000 * 119.99690 * 354.93546 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2934 1.0911 0.0000 4 6 3.6309 0.6325 -0.0006 5 6 4.8731 1.4858 -0.0003 6 1 5.7545 0.8444 -0.0005 7 6 4.8847 2.3698 -1.2489 8 6 4.8852 2.3550 1.2307 9 1 4.0333 2.3628 1.8947 10 6 5.9838 3.1400 1.5096 11 7 5.8558 4.2025 2.2739 12 14 7.6541 2.6945 0.8016 13 1 8.6619 3.6901 1.2469 14 1 7.5794 2.6956 -0.6814 15 1 8.0486 1.3438 1.2764 16 6 3.5817 -0.7128 -0.0069 17 35 5.0739 -1.8743 -0.0185 18 8 2.2926 -1.0899 -0.0006 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 1.9661 2.1203 0.0007 23 1 4.9975 1.7454 -2.1352 24 1 3.9477 2.9232 -1.3111 25 1 5.7174 3.0708 -1.1900 26 1 4.9773 4.4759 2.5812 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259580225.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:06 Heat of formation + Delta-G solvation = 5.820270 kcal Electronic energy + Delta-G solvation = -12175.530929 eV Core-core repulsion = 9881.057830 eV Total energy + Delta-G solvation = -2294.473099 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.000 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.08824 -35.18510 -32.53491 -32.19545 -30.75628 -29.50928 -25.66268 -24.68287 -22.13581 -20.41968 -18.56964 -17.37375 -16.24115 -15.87160 -14.19456 -13.60190 -13.50676 -12.97980 -12.92576 -12.62468 -12.32227 -12.07012 -11.52847 -11.22048 -10.76588 -10.71996 -10.42217 -10.17974 -9.77732 -9.73203 -9.15900 -8.80425 -8.18267 -7.73699 -6.44316 -4.03566 1.44624 2.01773 3.17156 3.42795 3.47840 3.64464 3.81082 4.53070 5.11442 5.23311 5.48460 5.50907 5.54250 5.80901 6.18894 6.29165 6.37155 6.50789 6.69142 6.77213 7.04238 7.20390 7.35920 7.58635 8.12333 8.40303 8.92091 9.60544 10.92131 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.010939 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.154594 B = 2559.091395 C = 3521.922243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.016 4.016 3 C -0.190 4.190 4 C -0.050 4.050 5 C 0.067 3.933 6 H 0.036 0.964 7 C -0.137 4.137 8 C -0.595 4.595 9 H 0.058 0.942 10 C 0.040 3.960 11 N -0.899 5.899 12 Si 1.030 2.970 13 H -0.285 1.285 14 H -0.275 1.275 15 H -0.280 1.280 16 C -0.072 4.072 17 Br 0.031 6.969 18 O -0.173 6.173 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.087 0.913 22 H 0.150 0.850 23 H 0.023 0.977 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 -10.734 -6.386 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.068 4.068 3 C -0.210 4.210 4 C -0.054 4.054 5 C 0.048 3.952 6 H 0.054 0.946 7 C -0.195 4.195 8 C -0.632 4.632 9 H 0.076 0.924 10 C -0.166 4.166 11 N -0.532 5.532 12 Si 0.857 3.143 13 H -0.211 1.211 14 H -0.201 1.201 15 H -0.206 1.206 16 C -0.198 4.198 17 Br 0.115 6.885 18 O -0.073 6.073 19 H 0.096 0.904 20 H 0.091 0.909 21 H 0.106 0.894 22 H 0.167 0.833 23 H 0.042 0.958 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.813 -11.013 -6.371 13.282 hybrid contribution -1.921 -0.107 0.134 1.928 sum -5.734 -11.120 -6.237 13.979 Atomic orbital electron populations 1.20242 0.85218 1.03757 1.03104 1.22424 0.93664 0.84342 1.06320 1.21489 0.92021 0.99329 1.08130 1.20817 0.97543 0.90787 0.96218 1.17790 0.88877 0.92689 0.95885 0.94573 1.22098 1.01331 0.99436 0.96624 1.21784 1.05506 1.27031 1.08928 0.92398 1.25661 1.02935 0.92353 0.95621 1.70852 1.27380 1.20765 1.34184 0.84242 0.76594 0.76580 0.76861 1.21066 1.20093 1.20618 1.23385 0.82682 0.93084 1.20603 1.96659 1.30128 1.63508 1.98217 1.83912 1.15118 1.34783 1.73461 0.90390 0.90900 0.89413 0.83261 0.95788 0.93727 0.92682 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.01 0.38 -0.40 15 2 C -0.02 -0.27 7.32 -35.63 -0.26 -0.54 15 3 C -0.19 -3.77 10.25 -39.70 -0.41 -4.18 15 4 C -0.05 -1.11 4.78 -104.70 -0.50 -1.61 15 5 C 0.07 1.62 2.24 -92.93 -0.21 1.41 15 6 H 0.04 0.88 5.77 -51.93 -0.30 0.58 15 7 C -0.14 -3.07 8.88 37.15 0.33 -2.74 15 8 C -0.60 -16.72 8.65 -34.44 -0.30 -17.02 15 9 H 0.06 1.77 7.95 -52.48 -0.42 1.35 15 10 C 0.04 1.15 5.20 -17.82 -0.09 1.06 15 11 N -0.90 -27.34 13.70 55.43 0.76 -26.58 15 12 Si 1.03 25.10 26.44 -169.99 -4.49 20.61 15 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 14 H -0.27 -6.20 6.14 56.52 0.35 -5.85 15 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 16 C -0.07 -1.48 7.80 29.45 0.23 -1.25 15 17 Br 0.03 0.56 33.12 -68.01 -2.25 -1.69 15 18 O -0.17 -3.33 10.65 5.55 0.06 -3.28 15 19 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.15 2.83 8.06 -52.49 -0.42 2.41 15 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 24 H 0.04 0.96 7.87 -51.93 -0.41 0.55 15 25 H 0.05 1.27 5.47 -51.93 -0.28 0.98 15 26 H 0.27 8.13 8.73 -40.82 -0.36 7.78 15 LS Contribution 246.22 15.07 3.71 3.71 Total: -1.00 -30.45 246.22 -5.78 -36.23 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -2.73 Total: -3.73 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -0.83 Total: -25.26 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.76 Total: -26.58 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: 0.06 Total: -3.28 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -4.49 Total: 20.61 kcal Atomic # 35 Polarization: 0.56 SS G_CDS: -2.25 Total: -1.69 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.45 -5.78 -36.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580225.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.053 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds