Wall clock time and date at job start Mon Mar 30 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34501 * 125.78176 * 2 1 4 4 C 1.41394 * 106.85403 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.58552 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46849 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.46812 * 300.00051 * 5 4 3 8 8 C 1.50697 * 109.47239 * 59.99926 * 5 4 3 9 9 H 1.08009 * 119.99867 * 354.36635 * 8 5 4 10 10 C 1.37875 * 120.00180 * 174.35508 * 8 5 4 11 11 N 1.31508 * 120.00164 * 156.91364 * 10 8 5 12 12 Si 1.86804 * 119.99909 * 336.92269 * 10 8 5 13 13 H 1.48504 * 109.46956 * 179.97438 * 12 10 8 14 14 H 1.48491 * 109.47504 * 59.99417 * 12 10 8 15 15 H 1.48503 * 109.46941 * 299.99390 * 12 10 8 16 16 C 1.34624 * 106.83072 * 0.26484 * 4 3 2 17 17 Br 1.89100 * 125.79926 * 179.70298 * 16 4 3 18 18 O 1.34309 * 108.40232 * 359.57209 * 16 4 3 19 19 H 1.09000 * 109.47102 * 89.99600 * 1 2 3 20 20 H 1.09001 * 109.46935 * 209.99760 * 1 2 3 21 21 H 1.08994 * 109.46834 * 329.99593 * 1 2 3 22 22 H 1.07998 * 126.57605 * 0.04894 * 3 2 1 23 23 H 1.09005 * 109.47353 * 293.21369 * 7 5 4 24 24 H 1.08999 * 109.47601 * 53.21888 * 7 5 4 25 25 H 1.09003 * 109.47047 * 173.21599 * 7 5 4 26 26 H 0.97000 * 119.99690 * 354.93546 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2934 1.0911 0.0000 4 6 3.6309 0.6325 -0.0006 5 6 4.8731 1.4858 -0.0003 6 1 5.7545 0.8444 -0.0005 7 6 4.8847 2.3698 -1.2489 8 6 4.8852 2.3550 1.2307 9 1 4.0333 2.3628 1.8947 10 6 5.9838 3.1400 1.5096 11 7 5.8558 4.2025 2.2739 12 14 7.6541 2.6945 0.8016 13 1 8.6619 3.6901 1.2469 14 1 7.5794 2.6956 -0.6814 15 1 8.0486 1.3438 1.2764 16 6 3.5817 -0.7128 -0.0069 17 35 5.0739 -1.8743 -0.0185 18 8 2.2926 -1.0899 -0.0006 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 1.9661 2.1203 0.0007 23 1 4.9975 1.7454 -2.1352 24 1 3.9477 2.9232 -1.3111 25 1 5.7174 3.0708 -1.1900 26 1 4.9773 4.4759 2.5812 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259580225.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:06 Heat of formation + Delta-G solvation = -12.760915 kcal Electronic energy + Delta-G solvation = -12176.336669 eV Core-core repulsion = 9881.057830 eV Total energy + Delta-G solvation = -2295.278839 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.000 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.59089 -37.03741 -34.32261 -33.72815 -32.35119 -31.05407 -27.05019 -26.68913 -23.90333 -22.01650 -20.21274 -19.49334 -17.78075 -17.35438 -16.00761 -15.37426 -15.05687 -14.59589 -14.25596 -13.89343 -13.84436 -13.79686 -13.19758 -12.81843 -12.54307 -12.31689 -12.18952 -11.78655 -11.63539 -11.46637 -11.14785 -10.52121 -10.35799 -9.25134 -8.70275 -6.31202 -0.05181 0.53855 1.48410 1.54260 1.59311 1.73955 2.42165 2.51043 3.03123 3.86375 3.89600 4.47993 4.56819 4.62613 4.64538 4.70654 4.84302 4.88814 5.01961 5.12552 5.32343 5.50059 5.63064 5.96966 6.04840 6.10974 6.59890 7.40884 8.63511 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.010939 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.154594 B = 2559.091395 C = 3521.922243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.008 3.992 3 C -0.225 4.225 4 C -0.082 4.082 5 C 0.067 3.933 6 H 0.038 0.962 7 C -0.133 4.133 8 C -0.594 4.594 9 H 0.018 0.982 10 C -0.007 4.007 11 N -0.931 5.931 12 Si 1.064 2.936 13 H -0.287 1.287 14 H -0.243 1.243 15 H -0.264 1.264 16 C -0.083 4.083 17 Br 0.053 6.947 18 O -0.174 6.174 19 H 0.105 0.895 20 H 0.091 0.909 21 H 0.103 0.897 22 H 0.148 0.852 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 -12.243 -7.799 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.044 4.044 3 C -0.244 4.244 4 C -0.086 4.086 5 C 0.048 3.952 6 H 0.056 0.944 7 C -0.191 4.191 8 C -0.632 4.632 9 H 0.036 0.964 10 C -0.206 4.206 11 N -0.566 5.566 12 Si 0.885 3.115 13 H -0.213 1.213 14 H -0.167 1.167 15 H -0.189 1.189 16 C -0.209 4.209 17 Br 0.137 6.863 18 O -0.072 6.072 19 H 0.123 0.877 20 H 0.110 0.890 21 H 0.121 0.879 22 H 0.166 0.834 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.216 -12.537 -7.796 15.353 hybrid contribution -1.933 0.323 0.612 2.053 sum -6.149 -12.214 -7.184 15.447 Atomic orbital electron populations 1.20552 0.80888 1.05458 1.05348 1.23369 0.95722 0.82917 1.02375 1.21588 0.91861 1.00239 1.10745 1.20784 0.97742 0.91663 0.98416 1.17672 0.90227 0.92655 0.94656 0.94357 1.21996 1.00955 0.99307 0.96809 1.21899 1.03935 1.27505 1.09831 0.96398 1.26989 1.06530 0.91705 0.95406 1.70971 1.26471 1.22627 1.36483 0.83824 0.72378 0.76969 0.78335 1.21272 1.16715 1.18892 1.23572 0.83802 0.93183 1.20339 1.96654 1.29046 1.62467 1.98171 1.83950 1.14782 1.35383 1.73129 0.87673 0.88994 0.87873 0.83441 0.93055 0.93861 0.93505 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.42 71.24 0.74 -0.56 15 2 C 0.01 0.26 7.32 24.83 0.18 0.44 15 3 C -0.22 -8.82 10.25 22.19 0.23 -8.59 15 4 C -0.08 -3.61 4.78 -19.91 -0.10 -3.71 15 5 C 0.07 3.22 2.24 -12.29 -0.03 3.19 15 6 H 0.04 1.81 5.77 -2.39 -0.01 1.80 15 7 C -0.13 -5.78 8.88 71.98 0.64 -5.14 15 8 C -0.59 -34.05 8.65 25.60 0.22 -33.83 15 9 H 0.02 1.13 7.95 -2.91 -0.02 1.11 15 10 C -0.01 -0.40 5.20 84.65 0.44 0.04 15 11 N -0.93 -58.13 13.70 21.45 0.29 -57.84 15 12 Si 1.06 49.70 26.44 68.60 1.81 51.51 15 13 H -0.29 -13.45 7.11 99.48 0.71 -12.74 15 14 H -0.24 -10.07 6.14 99.48 0.61 -9.46 15 15 H -0.26 -11.57 7.11 99.48 0.71 -10.86 15 16 C -0.08 -3.31 7.80 66.99 0.52 -2.79 15 17 Br 0.05 1.80 33.12 -20.37 -0.67 1.13 15 18 O -0.17 -6.33 10.65 -3.06 -0.03 -6.36 15 19 H 0.10 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.09 1.52 8.14 -2.39 -0.02 1.50 15 21 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.15 5.67 8.06 -2.91 -0.02 5.65 15 23 H 0.05 1.92 8.14 -2.38 -0.02 1.90 15 24 H 0.04 1.84 7.87 -2.39 -0.02 1.82 15 25 H 0.05 2.07 5.47 -2.39 -0.01 2.06 15 26 H 0.25 16.09 8.73 -92.71 -0.81 15.28 15 Total: -1.00 -66.43 246.22 5.30 -61.13 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: 1.05 Total: 1.38 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 2.85 Total: -50.96 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.29 Total: -57.84 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.03 Total: -6.36 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.81 Total: 51.51 kcal Atomic # 35 Polarization: 1.80 SS G_CDS: -0.67 Total: 1.13 kcal Total: -66.43 5.30 -61.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259580225.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.373 kcal (2) G-P(sol) polarization free energy of solvation -66.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds