Wall clock time and date at job start Mon Mar 30 2020 06:08:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46902 * 109.46911 * 2 1
4 4 C 1.46896 * 111.00116 * 66.36102 * 3 2 1
5 5 C 1.52998 * 109.47407 * 69.16965 * 4 3 2
6 6 C 1.46901 * 110.99817 * 190.31467 * 3 2 1
7 7 H 1.09007 * 109.22113 * 304.89712 * 6 3 2
8 8 C 1.52579 * 109.19375 * 64.27738 * 6 3 2
9 9 C 1.53100 * 109.95673 * 190.97398 * 8 6 3
10 10 S 1.81744 * 108.84014 * 296.97922 * 9 8 6
11 11 C 1.81739 * 102.22394 * 53.26405 * 10 9 8
12 12 C 1.52577 * 109.22639 * 185.49691 * 6 3 2
13 13 H 1.08999 * 109.38961 * 48.99170 * 12 6 3
14 14 C 1.53001 * 109.39134 * 289.19211 * 12 6 3
15 15 C 1.50697 * 109.47132 * 174.99732 * 14 12 6
16 16 H 1.07991 * 120.00085 * 0.02562 * 15 14 12
17 17 C 1.37887 * 119.99579 * 179.97438 * 15 14 12
18 18 N 1.31512 * 119.99652 * 180.02562 * 17 15 14
19 19 Si 1.86794 * 120.00100 * 0.02562 * 17 15 14
20 20 H 1.48498 * 109.47217 * 269.99847 * 19 17 15
21 21 H 1.48493 * 109.47512 * 29.99905 * 19 17 15
22 22 H 1.48506 * 109.47252 * 150.00292 * 19 17 15
23 23 H 1.09003 * 109.46857 * 174.29419 * 1 2 3
24 24 H 1.08999 * 109.47152 * 294.29637 * 1 2 3
25 25 H 1.08999 * 109.47058 * 54.29970 * 1 2 3
26 26 H 1.08999 * 109.46732 * 240.00026 * 2 1 3
27 27 H 1.09002 * 109.47095 * 120.00102 * 2 1 3
28 28 H 1.09003 * 109.47209 * 189.17833 * 4 3 2
29 29 H 1.09004 * 109.47163 * 309.17484 * 4 3 2
30 30 H 1.09005 * 109.46382 * 65.43893 * 5 4 3
31 31 H 1.08998 * 109.47167 * 185.43689 * 5 4 3
32 32 H 1.08998 * 109.47616 * 305.44739 * 5 4 3
33 33 H 1.08997 * 109.39055 * 311.12574 * 8 6 3
34 34 H 1.09008 * 109.38931 * 70.92471 * 8 6 3
35 35 H 1.08993 * 109.57492 * 56.78734 * 9 8 6
36 36 H 1.08998 * 109.57390 * 177.17110 * 9 8 6
37 37 H 1.08998 * 109.58024 * 186.92525 * 11 10 9
38 38 H 1.09001 * 109.57644 * 66.53988 * 11 10 9
39 39 H 1.09006 * 109.46904 * 54.99983 * 14 12 6
40 40 H 1.09001 * 109.47245 * 295.00529 * 14 12 6
41 41 H 0.96998 * 119.99720 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.6767 2.0647 1.2563
5 6 2.4929 1.4621 2.4015
6 6 3.4673 1.4316 -0.2456
7 1 3.9759 0.8051 0.4872
8 6 3.7557 0.9010 -1.6468
9 6 5.2609 0.6844 -1.8239
10 16 6.1058 2.2867 -1.6762
11 6 5.4857 2.9033 -0.0830
12 6 3.9552 2.8701 -0.1018
13 1 3.5741 3.2902 0.8290
14 6 3.4437 3.7003 -1.2807
15 6 3.8201 5.1454 -1.0783
16 1 4.3695 5.4420 -0.1972
17 6 3.4637 6.0888 -2.0187
18 7 3.7926 7.3498 -1.8423
19 14 2.5139 5.5756 -3.5431
20 1 3.4678 5.2200 -4.6243
21 1 1.6653 4.3993 -3.2250
22 1 1.6536 6.6998 -3.9921
23 1 -0.3633 -1.0226 -0.1022
24 1 -0.3633 0.4228 0.9366
25 1 -0.3633 0.5997 -0.8345
26 1 1.8933 -0.5138 -0.8900
27 1 1.8934 -0.5139 0.8900
28 1 1.9034 3.1272 1.1683
29 1 0.6138 1.9357 1.4607
30 1 3.5504 1.6756 2.2454
31 1 2.1699 1.8983 3.3467
32 1 2.3403 0.3832 2.4282
33 1 3.2346 -0.0456 -1.7896
34 1 3.4058 1.6219 -2.3858
35 1 5.6257 0.0067 -1.0522
36 1 5.4552 0.2585 -2.8082
37 1 5.8270 3.9270 0.0703
38 1 5.8549 2.2688 0.7228
39 1 2.3590 3.6127 -1.3433
40 1 3.8916 3.3340 -2.2045
41 1 3.5423 8.0134 -2.5040
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259689482.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:08:05
Heat of formation + Delta-G solvation = 0.298684 kcal
Electronic energy + Delta-G solvation = -18879.892099 eV
Core-core repulsion = 16306.868904 eV
Total energy + Delta-G solvation = -2573.023195 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 257.151 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.46378 -35.42258 -32.87475 -31.87951 -30.84263 -28.95990 -27.68247 -25.33844
-24.13051 -22.41210 -21.99147 -20.08652 -18.18983 -17.04591 -16.35226 -15.82949
-15.42363 -14.37292 -14.08337 -13.96911 -13.66141 -13.54631 -13.12676 -12.84628
-12.62498 -12.36983 -12.25067 -12.16733 -11.89178 -11.48831 -11.33532 -11.23367
-11.06458 -10.98762 -10.81142 -10.34574 -10.08406 -9.77160 -9.66596 -9.46155
-9.02698 -8.90464 -8.38066 -7.94866 -6.94124 -5.91015 -3.85861 2.31953
3.13090 3.44149 3.50130 3.56499 4.05761 4.60075 4.97503 5.02317
5.16231 5.28030 5.29105 5.34705 5.41478 5.45724 5.52418 5.55438
5.61850 5.64479 5.70920 5.77795 5.80172 5.83517 6.07013 6.08543
6.13566 6.18151 6.23019 6.40930 6.50983 6.54787 6.60304 6.94919
7.37794 7.40908 7.53908 7.66911 7.96786 8.65292 9.12523 9.73802
11.22722
Molecular weight = 257.15amu
Principal moments of inertia in cm(-1)
A = 0.016930 B = 0.009072 C = 0.007614
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1653.433983 B = 3085.828231 C = 3676.675915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.042 3.958
3 N -0.522 5.522
4 C 0.042 3.958
5 C -0.190 4.190
6 C 0.087 3.913
7 H 0.030 0.970
8 C -0.122 4.122
9 C -0.083 4.083
10 S -0.255 6.255
11 C -0.059 4.059
12 C -0.077 4.077
13 H 0.080 0.920
14 C -0.008 4.008
15 C -0.508 4.508
16 H 0.066 0.934
17 C 0.068 3.932
18 N -0.910 5.910
19 Si 0.874 3.126
20 H -0.277 1.277
21 H -0.262 1.262
22 H -0.293 1.293
23 H 0.052 0.948
24 H 0.052 0.948
25 H 0.064 0.936
26 H 0.074 0.926
27 H 0.030 0.970
28 H 0.092 0.908
29 H 0.072 0.928
30 H 0.059 0.941
31 H 0.057 0.943
32 H 0.049 0.951
33 H 0.065 0.935
34 H 0.094 0.906
35 H 0.071 0.929
36 H 0.097 0.903
37 H 0.115 0.885
38 H 0.060 0.940
39 H 0.027 0.973
40 H 0.035 0.965
41 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.550 -16.155 4.698 17.017
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.086 4.086
3 N -0.245 5.245
4 C -0.085 4.085
5 C -0.249 4.249
6 C -0.021 4.021
7 H 0.048 0.952
8 C -0.161 4.161
9 C -0.232 4.232
10 S -0.029 6.029
11 C -0.208 4.208
12 C -0.097 4.097
13 H 0.098 0.902
14 C -0.046 4.046
15 C -0.546 4.546
16 H 0.084 0.916
17 C -0.132 4.132
18 N -0.550 5.550
19 Si 0.702 3.298
20 H -0.203 1.203
21 H -0.187 1.187
22 H -0.220 1.220
23 H 0.071 0.929
24 H 0.071 0.929
25 H 0.083 0.917
26 H 0.092 0.908
27 H 0.048 0.952
28 H 0.110 0.890
29 H 0.090 0.910
30 H 0.078 0.922
31 H 0.076 0.924
32 H 0.068 0.932
33 H 0.084 0.916
34 H 0.112 0.888
35 H 0.089 0.911
36 H 0.116 0.884
37 H 0.133 0.867
38 H 0.079 0.921
39 H 0.045 0.955
40 H 0.053 0.947
41 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -2.071 -15.261 3.519 15.798
hybrid contribution -0.852 -1.100 0.745 1.578
sum -2.923 -16.361 4.264 17.159
Atomic orbital electron populations
1.21786 0.95209 1.01042 1.02428 1.22169 0.95874 0.90140 1.00392
1.62159 1.13927 1.14658 1.33792 1.22282 0.99212 1.00363 0.86688
1.22434 1.01714 1.00803 0.99961 1.21614 0.87491 0.97558 0.95446
0.95191 1.21891 0.93711 1.01870 0.98639 1.23352 0.97936 0.97215
1.04721 1.86828 1.61157 1.21974 1.32949 1.23504 0.98826 1.04671
0.93779 1.21328 0.92304 0.93110 1.02952 0.90176 1.19789 0.96707
0.94798 0.93299 1.21094 1.35579 0.90449 1.07435 0.91575 1.24930
0.95625 0.94744 0.97904 1.69917 1.47843 1.01254 1.35938 0.86844
0.80577 0.78333 0.84035 1.20331 1.18668 1.21956 0.92871 0.92891
0.91650 0.90802 0.95227 0.88971 0.90989 0.92233 0.92378 0.93158
0.91644 0.88800 0.91080 0.88412 0.86661 0.92148 0.95459 0.94723
0.93055
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.62 9.72 37.16 0.36 -1.26 16
2 C 0.04 0.52 5.41 -3.82 -0.02 0.50 16
3 N -0.52 -7.82 4.18 -227.16 -0.95 -8.77 16
4 C 0.04 0.60 5.35 -3.83 -0.02 0.58 16
5 C -0.19 -2.35 8.92 37.16 0.33 -2.02 16
6 C 0.09 1.36 0.77 -68.14 -0.05 1.31 16
7 H 0.03 0.45 6.80 -51.92 -0.35 0.10 16
8 C -0.12 -1.86 4.97 -26.89 -0.13 -1.99 16
9 C -0.08 -1.20 6.46 37.21 0.24 -0.96 16
10 S -0.26 -4.68 20.69 -107.50 -2.22 -6.90 16
11 C -0.06 -1.08 5.75 37.21 0.21 -0.87 16
12 C -0.08 -1.44 1.37 -90.79 -0.12 -1.56 16
13 H 0.08 1.53 5.14 -51.93 -0.27 1.26 16
14 C -0.01 -0.19 2.48 -27.88 -0.07 -0.26 16
15 C -0.51 -14.07 8.99 -34.44 -0.31 -14.38 16
16 H 0.07 1.96 7.27 -52.49 -0.38 1.58 16
17 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16
18 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16
19 Si 0.87 22.35 27.47 -169.99 -4.67 17.68 16
20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16
21 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16
22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16
23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
24 H 0.05 0.57 6.65 -51.93 -0.35 0.22 16
25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
26 H 0.07 0.88 5.80 -51.93 -0.30 0.58 16
27 H 0.03 0.35 6.26 -51.93 -0.33 0.02 16
28 H 0.09 1.54 6.28 -51.93 -0.33 1.21 16
29 H 0.07 0.94 6.24 -51.93 -0.32 0.61 16
30 H 0.06 0.79 6.12 -51.93 -0.32 0.47 16
31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.05 0.58 6.34 -51.93 -0.33 0.25 16
33 H 0.07 0.86 5.84 -51.93 -0.30 0.55 16
34 H 0.09 1.70 5.89 -51.92 -0.31 1.39 16
35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
36 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16
37 H 0.12 2.36 7.00 -51.93 -0.36 2.00 16
38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
39 H 0.03 0.66 6.87 -51.93 -0.36 0.31 16
40 H 0.03 0.83 4.47 -51.93 -0.23 0.60 16
41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
LS Contribution 302.84 15.07 4.56 4.56
Total: -1.00 -30.13 302.84 -8.72 -38.86
By element:
Atomic # 1 Polarization: 7.68 SS G_CDS: -6.53 Total: 1.14 kcal
Atomic # 6 Polarization: -19.35 SS G_CDS: 0.32 Total: -19.03 kcal
Atomic # 7 Polarization: -36.14 SS G_CDS: -0.17 Total: -36.31 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal
Atomic # 16 Polarization: -4.68 SS G_CDS: -2.22 Total: -6.90 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -30.13 -8.72 -38.86 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259689482.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.154 kcal
(2) G-P(sol) polarization free energy of solvation -30.135 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.019 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.299 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds