Wall clock time and date at job start Mon Mar 30 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46911 * 2 1 4 4 C 1.46896 * 111.00116 * 66.36102 * 3 2 1 5 5 C 1.52998 * 109.47407 * 69.16965 * 4 3 2 6 6 C 1.46901 * 110.99817 * 190.31467 * 3 2 1 7 7 H 1.09007 * 109.22113 * 304.89712 * 6 3 2 8 8 C 1.52579 * 109.19375 * 64.27738 * 6 3 2 9 9 C 1.53100 * 109.95673 * 190.97398 * 8 6 3 10 10 S 1.81744 * 108.84014 * 296.97922 * 9 8 6 11 11 C 1.81739 * 102.22394 * 53.26405 * 10 9 8 12 12 C 1.52577 * 109.22639 * 185.49691 * 6 3 2 13 13 H 1.08999 * 109.38961 * 48.99170 * 12 6 3 14 14 C 1.53001 * 109.39134 * 289.19211 * 12 6 3 15 15 C 1.50697 * 109.47132 * 174.99732 * 14 12 6 16 16 H 1.07991 * 120.00085 * 0.02562 * 15 14 12 17 17 C 1.37887 * 119.99579 * 179.97438 * 15 14 12 18 18 N 1.31512 * 119.99652 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00100 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47217 * 269.99847 * 19 17 15 21 21 H 1.48493 * 109.47512 * 29.99905 * 19 17 15 22 22 H 1.48506 * 109.47252 * 150.00292 * 19 17 15 23 23 H 1.09003 * 109.46857 * 174.29419 * 1 2 3 24 24 H 1.08999 * 109.47152 * 294.29637 * 1 2 3 25 25 H 1.08999 * 109.47058 * 54.29970 * 1 2 3 26 26 H 1.08999 * 109.46732 * 240.00026 * 2 1 3 27 27 H 1.09002 * 109.47095 * 120.00102 * 2 1 3 28 28 H 1.09003 * 109.47209 * 189.17833 * 4 3 2 29 29 H 1.09004 * 109.47163 * 309.17484 * 4 3 2 30 30 H 1.09005 * 109.46382 * 65.43893 * 5 4 3 31 31 H 1.08998 * 109.47167 * 185.43689 * 5 4 3 32 32 H 1.08998 * 109.47616 * 305.44739 * 5 4 3 33 33 H 1.08997 * 109.39055 * 311.12574 * 8 6 3 34 34 H 1.09008 * 109.38931 * 70.92471 * 8 6 3 35 35 H 1.08993 * 109.57492 * 56.78734 * 9 8 6 36 36 H 1.08998 * 109.57390 * 177.17110 * 9 8 6 37 37 H 1.08998 * 109.58024 * 186.92525 * 11 10 9 38 38 H 1.09001 * 109.57644 * 66.53988 * 11 10 9 39 39 H 1.09006 * 109.46904 * 54.99983 * 14 12 6 40 40 H 1.09001 * 109.47245 * 295.00529 * 14 12 6 41 41 H 0.96998 * 119.99720 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6767 2.0647 1.2563 5 6 2.4929 1.4621 2.4015 6 6 3.4673 1.4316 -0.2456 7 1 3.9759 0.8051 0.4872 8 6 3.7557 0.9010 -1.6468 9 6 5.2609 0.6844 -1.8239 10 16 6.1058 2.2867 -1.6762 11 6 5.4857 2.9033 -0.0830 12 6 3.9552 2.8701 -0.1018 13 1 3.5741 3.2902 0.8290 14 6 3.4437 3.7003 -1.2807 15 6 3.8201 5.1454 -1.0783 16 1 4.3695 5.4420 -0.1972 17 6 3.4637 6.0888 -2.0187 18 7 3.7926 7.3498 -1.8423 19 14 2.5139 5.5756 -3.5431 20 1 3.4678 5.2200 -4.6243 21 1 1.6653 4.3993 -3.2250 22 1 1.6536 6.6998 -3.9921 23 1 -0.3633 -1.0226 -0.1022 24 1 -0.3633 0.4228 0.9366 25 1 -0.3633 0.5997 -0.8345 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.9034 3.1272 1.1683 29 1 0.6138 1.9357 1.4607 30 1 3.5504 1.6756 2.2454 31 1 2.1699 1.8983 3.3467 32 1 2.3403 0.3832 2.4282 33 1 3.2346 -0.0456 -1.7896 34 1 3.4058 1.6219 -2.3858 35 1 5.6257 0.0067 -1.0522 36 1 5.4552 0.2585 -2.8082 37 1 5.8270 3.9270 0.0703 38 1 5.8549 2.2688 0.7228 39 1 2.3590 3.6127 -1.3433 40 1 3.8916 3.3340 -2.2045 41 1 3.5423 8.0134 -2.5040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259689482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:05 Heat of formation + Delta-G solvation = 0.298684 kcal Electronic energy + Delta-G solvation = -18879.892099 eV Core-core repulsion = 16306.868904 eV Total energy + Delta-G solvation = -2573.023195 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.46378 -35.42258 -32.87475 -31.87951 -30.84263 -28.95990 -27.68247 -25.33844 -24.13051 -22.41210 -21.99147 -20.08652 -18.18983 -17.04591 -16.35226 -15.82949 -15.42363 -14.37292 -14.08337 -13.96911 -13.66141 -13.54631 -13.12676 -12.84628 -12.62498 -12.36983 -12.25067 -12.16733 -11.89178 -11.48831 -11.33532 -11.23367 -11.06458 -10.98762 -10.81142 -10.34574 -10.08406 -9.77160 -9.66596 -9.46155 -9.02698 -8.90464 -8.38066 -7.94866 -6.94124 -5.91015 -3.85861 2.31953 3.13090 3.44149 3.50130 3.56499 4.05761 4.60075 4.97503 5.02317 5.16231 5.28030 5.29105 5.34705 5.41478 5.45724 5.52418 5.55438 5.61850 5.64479 5.70920 5.77795 5.80172 5.83517 6.07013 6.08543 6.13566 6.18151 6.23019 6.40930 6.50983 6.54787 6.60304 6.94919 7.37794 7.40908 7.53908 7.66911 7.96786 8.65292 9.12523 9.73802 11.22722 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.009072 C = 0.007614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.433983 B = 3085.828231 C = 3676.675915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.042 3.958 3 N -0.522 5.522 4 C 0.042 3.958 5 C -0.190 4.190 6 C 0.087 3.913 7 H 0.030 0.970 8 C -0.122 4.122 9 C -0.083 4.083 10 S -0.255 6.255 11 C -0.059 4.059 12 C -0.077 4.077 13 H 0.080 0.920 14 C -0.008 4.008 15 C -0.508 4.508 16 H 0.066 0.934 17 C 0.068 3.932 18 N -0.910 5.910 19 Si 0.874 3.126 20 H -0.277 1.277 21 H -0.262 1.262 22 H -0.293 1.293 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.060 0.940 39 H 0.027 0.973 40 H 0.035 0.965 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 -16.155 4.698 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 N -0.245 5.245 4 C -0.085 4.085 5 C -0.249 4.249 6 C -0.021 4.021 7 H 0.048 0.952 8 C -0.161 4.161 9 C -0.232 4.232 10 S -0.029 6.029 11 C -0.208 4.208 12 C -0.097 4.097 13 H 0.098 0.902 14 C -0.046 4.046 15 C -0.546 4.546 16 H 0.084 0.916 17 C -0.132 4.132 18 N -0.550 5.550 19 Si 0.702 3.298 20 H -0.203 1.203 21 H -0.187 1.187 22 H -0.220 1.220 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.071 -15.261 3.519 15.798 hybrid contribution -0.852 -1.100 0.745 1.578 sum -2.923 -16.361 4.264 17.159 Atomic orbital electron populations 1.21786 0.95209 1.01042 1.02428 1.22169 0.95874 0.90140 1.00392 1.62159 1.13927 1.14658 1.33792 1.22282 0.99212 1.00363 0.86688 1.22434 1.01714 1.00803 0.99961 1.21614 0.87491 0.97558 0.95446 0.95191 1.21891 0.93711 1.01870 0.98639 1.23352 0.97936 0.97215 1.04721 1.86828 1.61157 1.21974 1.32949 1.23504 0.98826 1.04671 0.93779 1.21328 0.92304 0.93110 1.02952 0.90176 1.19789 0.96707 0.94798 0.93299 1.21094 1.35579 0.90449 1.07435 0.91575 1.24930 0.95625 0.94744 0.97904 1.69917 1.47843 1.01254 1.35938 0.86844 0.80577 0.78333 0.84035 1.20331 1.18668 1.21956 0.92871 0.92891 0.91650 0.90802 0.95227 0.88971 0.90989 0.92233 0.92378 0.93158 0.91644 0.88800 0.91080 0.88412 0.86661 0.92148 0.95459 0.94723 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.72 37.16 0.36 -1.26 16 2 C 0.04 0.52 5.41 -3.82 -0.02 0.50 16 3 N -0.52 -7.82 4.18 -227.16 -0.95 -8.77 16 4 C 0.04 0.60 5.35 -3.83 -0.02 0.58 16 5 C -0.19 -2.35 8.92 37.16 0.33 -2.02 16 6 C 0.09 1.36 0.77 -68.14 -0.05 1.31 16 7 H 0.03 0.45 6.80 -51.92 -0.35 0.10 16 8 C -0.12 -1.86 4.97 -26.89 -0.13 -1.99 16 9 C -0.08 -1.20 6.46 37.21 0.24 -0.96 16 10 S -0.26 -4.68 20.69 -107.50 -2.22 -6.90 16 11 C -0.06 -1.08 5.75 37.21 0.21 -0.87 16 12 C -0.08 -1.44 1.37 -90.79 -0.12 -1.56 16 13 H 0.08 1.53 5.14 -51.93 -0.27 1.26 16 14 C -0.01 -0.19 2.48 -27.88 -0.07 -0.26 16 15 C -0.51 -14.07 8.99 -34.44 -0.31 -14.38 16 16 H 0.07 1.96 7.27 -52.49 -0.38 1.58 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 18 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16 19 Si 0.87 22.35 27.47 -169.99 -4.67 17.68 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.57 6.65 -51.93 -0.35 0.22 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.88 5.80 -51.93 -0.30 0.58 16 27 H 0.03 0.35 6.26 -51.93 -0.33 0.02 16 28 H 0.09 1.54 6.28 -51.93 -0.33 1.21 16 29 H 0.07 0.94 6.24 -51.93 -0.32 0.61 16 30 H 0.06 0.79 6.12 -51.93 -0.32 0.47 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.58 6.34 -51.93 -0.33 0.25 16 33 H 0.07 0.86 5.84 -51.93 -0.30 0.55 16 34 H 0.09 1.70 5.89 -51.92 -0.31 1.39 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.12 2.36 7.00 -51.93 -0.36 2.00 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.03 0.66 6.87 -51.93 -0.36 0.31 16 40 H 0.03 0.83 4.47 -51.93 -0.23 0.60 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -30.13 302.84 -8.72 -38.86 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.53 Total: 1.14 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 0.32 Total: -19.03 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.17 Total: -36.31 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Atomic # 16 Polarization: -4.68 SS G_CDS: -2.22 Total: -6.90 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.13 -8.72 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.154 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds