Wall clock time and date at job start Mon Mar 30 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46911 * 2 1 4 4 C 1.46896 * 111.00116 * 66.36102 * 3 2 1 5 5 C 1.52998 * 109.47407 * 69.16965 * 4 3 2 6 6 C 1.46901 * 110.99817 * 190.31467 * 3 2 1 7 7 H 1.09007 * 109.22113 * 304.89712 * 6 3 2 8 8 C 1.52579 * 109.19375 * 64.27738 * 6 3 2 9 9 C 1.53100 * 109.95673 * 190.97398 * 8 6 3 10 10 S 1.81744 * 108.84014 * 296.97922 * 9 8 6 11 11 C 1.81739 * 102.22394 * 53.26405 * 10 9 8 12 12 C 1.52577 * 109.22639 * 185.49691 * 6 3 2 13 13 H 1.08999 * 109.38961 * 48.99170 * 12 6 3 14 14 C 1.53001 * 109.39134 * 289.19211 * 12 6 3 15 15 C 1.50697 * 109.47132 * 174.99732 * 14 12 6 16 16 H 1.07991 * 120.00085 * 0.02562 * 15 14 12 17 17 C 1.37887 * 119.99579 * 179.97438 * 15 14 12 18 18 N 1.31512 * 119.99652 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00100 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47217 * 269.99847 * 19 17 15 21 21 H 1.48493 * 109.47512 * 29.99905 * 19 17 15 22 22 H 1.48506 * 109.47252 * 150.00292 * 19 17 15 23 23 H 1.09003 * 109.46857 * 174.29419 * 1 2 3 24 24 H 1.08999 * 109.47152 * 294.29637 * 1 2 3 25 25 H 1.08999 * 109.47058 * 54.29970 * 1 2 3 26 26 H 1.08999 * 109.46732 * 240.00026 * 2 1 3 27 27 H 1.09002 * 109.47095 * 120.00102 * 2 1 3 28 28 H 1.09003 * 109.47209 * 189.17833 * 4 3 2 29 29 H 1.09004 * 109.47163 * 309.17484 * 4 3 2 30 30 H 1.09005 * 109.46382 * 65.43893 * 5 4 3 31 31 H 1.08998 * 109.47167 * 185.43689 * 5 4 3 32 32 H 1.08998 * 109.47616 * 305.44739 * 5 4 3 33 33 H 1.08997 * 109.39055 * 311.12574 * 8 6 3 34 34 H 1.09008 * 109.38931 * 70.92471 * 8 6 3 35 35 H 1.08993 * 109.57492 * 56.78734 * 9 8 6 36 36 H 1.08998 * 109.57390 * 177.17110 * 9 8 6 37 37 H 1.08998 * 109.58024 * 186.92525 * 11 10 9 38 38 H 1.09001 * 109.57644 * 66.53988 * 11 10 9 39 39 H 1.09006 * 109.46904 * 54.99983 * 14 12 6 40 40 H 1.09001 * 109.47245 * 295.00529 * 14 12 6 41 41 H 0.96998 * 119.99720 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6767 2.0647 1.2563 5 6 2.4929 1.4621 2.4015 6 6 3.4673 1.4316 -0.2456 7 1 3.9759 0.8051 0.4872 8 6 3.7557 0.9010 -1.6468 9 6 5.2609 0.6844 -1.8239 10 16 6.1058 2.2867 -1.6762 11 6 5.4857 2.9033 -0.0830 12 6 3.9552 2.8701 -0.1018 13 1 3.5741 3.2902 0.8290 14 6 3.4437 3.7003 -1.2807 15 6 3.8201 5.1454 -1.0783 16 1 4.3695 5.4420 -0.1972 17 6 3.4637 6.0888 -2.0187 18 7 3.7926 7.3498 -1.8423 19 14 2.5139 5.5756 -3.5431 20 1 3.4678 5.2200 -4.6243 21 1 1.6653 4.3993 -3.2250 22 1 1.6536 6.6998 -3.9921 23 1 -0.3633 -1.0226 -0.1022 24 1 -0.3633 0.4228 0.9366 25 1 -0.3633 0.5997 -0.8345 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.9034 3.1272 1.1683 29 1 0.6138 1.9357 1.4607 30 1 3.5504 1.6756 2.2454 31 1 2.1699 1.8983 3.3467 32 1 2.3403 0.3832 2.4282 33 1 3.2346 -0.0456 -1.7896 34 1 3.4058 1.6219 -2.3858 35 1 5.6257 0.0067 -1.0522 36 1 5.4552 0.2585 -2.8082 37 1 5.8270 3.9270 0.0703 38 1 5.8549 2.2688 0.7228 39 1 2.3590 3.6127 -1.3433 40 1 3.8916 3.3340 -2.2045 41 1 3.5423 8.0134 -2.5040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259689482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:05 Heat of formation + Delta-G solvation = -18.245036 kcal Electronic energy + Delta-G solvation = -18880.696215 eV Core-core repulsion = 16306.868904 eV Total energy + Delta-G solvation = -2573.827311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69919 -36.77626 -34.71575 -33.37438 -32.04135 -30.04266 -29.56820 -26.57607 -25.42966 -23.95783 -23.30262 -21.32236 -19.60726 -18.99761 -17.73652 -17.23205 -16.50349 -16.13124 -15.56829 -15.29078 -14.98223 -14.95726 -14.56876 -14.16946 -13.97260 -13.69426 -13.55966 -13.43495 -13.09150 -12.97559 -12.85978 -12.49056 -12.37757 -12.20178 -12.08262 -11.87320 -11.63694 -11.45626 -11.33051 -11.16735 -10.73212 -10.67637 -10.38237 -9.04314 -8.40468 -8.19567 -6.17232 0.97854 1.38684 1.39057 1.51863 1.78102 2.43440 2.96185 3.19014 3.81801 3.87123 4.03288 4.13344 4.15262 4.24636 4.35244 4.36168 4.42289 4.51729 4.54365 4.58312 4.64605 4.73328 4.80543 4.90403 5.01397 5.04897 5.10826 5.16034 5.17435 5.20889 5.28361 5.36503 5.52040 5.59352 5.76903 5.82513 6.25696 6.35504 6.39746 6.88746 7.45094 8.97507 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.009072 C = 0.007614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.433983 B = 3085.828231 C = 3676.675915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 N -0.542 5.542 4 C 0.043 3.957 5 C -0.182 4.182 6 C 0.097 3.903 7 H 0.049 0.951 8 C -0.121 4.121 9 C -0.064 4.064 10 S -0.313 6.313 11 C -0.050 4.050 12 C -0.072 4.072 13 H 0.071 0.929 14 C 0.006 3.994 15 C -0.502 4.502 16 H 0.031 0.969 17 C 0.006 3.994 18 N -0.958 5.958 19 Si 0.938 3.062 20 H -0.273 1.273 21 H -0.247 1.247 22 H -0.291 1.291 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.017 0.983 40 H 0.033 0.967 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 -19.790 4.579 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 N -0.266 5.266 4 C -0.084 4.084 5 C -0.240 4.240 6 C -0.012 4.012 7 H 0.066 0.934 8 C -0.159 4.159 9 C -0.212 4.212 10 S -0.087 6.087 11 C -0.199 4.199 12 C -0.092 4.092 13 H 0.089 0.911 14 C -0.031 4.031 15 C -0.540 4.540 16 H 0.049 0.951 17 C -0.190 4.190 18 N -0.600 5.600 19 Si 0.763 3.237 20 H -0.199 1.199 21 H -0.171 1.171 22 H -0.217 1.217 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.035 0.965 40 H 0.051 0.949 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.026 -18.919 3.410 19.461 hybrid contribution -0.545 0.029 0.854 1.013 sum -3.571 -18.890 4.264 19.692 Atomic orbital electron populations 1.21763 0.94431 1.02132 1.01794 1.22251 0.96481 0.88384 1.01331 1.62135 1.13362 1.16752 1.34356 1.22191 1.00273 0.98537 0.87441 1.22337 1.00576 1.01623 0.99496 1.21435 0.88308 0.94976 0.96446 0.93353 1.21865 0.94425 1.02495 0.97157 1.23442 0.96648 0.94252 1.06869 1.87010 1.62421 1.25896 1.33419 1.23358 0.98416 1.03392 0.94738 1.21188 0.92558 0.95017 1.00438 0.91080 1.19586 0.95859 0.92419 0.95263 1.21459 1.33779 0.93075 1.05697 0.95106 1.25806 0.97082 0.94716 1.01364 1.70069 1.49995 1.02569 1.37365 0.85831 0.79395 0.78386 0.80119 1.19852 1.17057 1.21718 0.90686 0.92811 0.93251 0.90012 0.93905 0.92438 0.89833 0.93276 0.91473 0.91577 0.88477 0.91785 0.88376 0.86402 0.90200 0.89204 0.96500 0.94875 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.72 71.98 0.70 -1.99 16 2 C 0.04 0.88 5.41 86.30 0.47 1.34 16 3 N -0.54 -14.92 4.18 -872.60 -3.64 -18.57 16 4 C 0.04 1.17 5.35 86.30 0.46 1.63 16 5 C -0.18 -4.04 8.92 71.98 0.64 -3.40 16 6 C 0.10 2.77 0.77 44.64 0.03 2.80 16 7 H 0.05 1.25 6.80 -2.38 -0.02 1.23 16 8 C -0.12 -3.26 4.97 30.49 0.15 -3.11 16 9 C -0.06 -1.61 6.46 72.02 0.46 -1.14 16 10 S -0.31 -11.21 20.69 -56.49 -1.17 -12.38 16 11 C -0.05 -1.84 5.75 72.01 0.41 -1.43 16 12 C -0.07 -2.67 1.37 -10.90 -0.01 -2.69 16 13 H 0.07 2.77 5.14 -2.39 -0.01 2.75 16 14 C 0.01 0.30 2.48 29.85 0.07 0.37 16 15 C -0.50 -28.92 8.99 25.60 0.23 -28.69 16 16 H 0.03 1.94 7.27 -2.92 -0.02 1.92 16 17 C 0.01 0.34 5.47 84.66 0.46 0.80 16 18 N -0.96 -61.88 13.96 21.45 0.30 -61.58 16 19 Si 0.94 46.86 27.47 68.60 1.88 48.74 16 20 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.25 -11.62 6.54 99.48 0.65 -10.97 16 22 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 0.99 6.65 -2.39 -0.02 0.97 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.55 5.80 -2.39 -0.01 1.54 16 27 H 0.04 0.79 6.26 -2.39 -0.01 0.78 16 28 H 0.06 1.94 6.28 -2.39 -0.01 1.93 16 29 H 0.08 2.03 6.24 -2.39 -0.01 2.01 16 30 H 0.05 1.19 6.12 -2.38 -0.01 1.18 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.27 6.34 -2.39 -0.02 1.25 16 33 H 0.10 2.06 5.84 -2.39 -0.01 2.05 16 34 H 0.06 2.16 5.89 -2.38 -0.01 2.14 16 35 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.08 3.45 7.00 -2.39 -0.02 3.43 16 38 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.02 0.82 6.87 -2.38 -0.02 0.80 16 40 H 0.03 1.58 4.47 -2.39 -0.01 1.57 16 41 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -67.60 302.84 2.41 -65.19 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.95 Total: 14.09 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 4.09 Total: -35.49 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -3.34 Total: -80.15 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.88 Total: 48.74 kcal Atomic # 16 Polarization: -11.21 SS G_CDS: -1.17 Total: -12.38 kcal Total: -67.60 2.41 -65.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.947 kcal (2) G-P(sol) polarization free energy of solvation -67.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds