Wall clock time and date at job start Mon Mar 30 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47321 * 2 1 4 4 C 1.46901 * 110.99532 * 65.54153 * 3 2 1 5 5 C 1.52996 * 109.47227 * 66.35222 * 4 3 2 6 6 C 1.46896 * 111.00303 * 189.49375 * 3 2 1 7 7 H 1.09002 * 109.22048 * 306.91171 * 6 3 2 8 8 C 1.52577 * 109.22749 * 187.54708 * 6 3 2 9 9 C 1.53098 * 109.95691 * 169.00583 * 8 6 3 10 10 S 1.81741 * 108.84086 * 63.02556 * 9 8 6 11 11 C 1.81749 * 102.22245 * 306.73402 * 10 9 8 12 12 C 1.52587 * 109.22395 * 66.31156 * 6 3 2 13 13 H 1.08998 * 109.38625 * 311.14603 * 12 6 3 14 14 C 1.52995 * 109.39077 * 70.84922 * 12 6 3 15 15 C 1.50692 * 109.47402 * 185.88650 * 14 12 6 16 16 H 1.08007 * 119.99816 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00342 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99864 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00269 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46799 * 60.00256 * 19 17 15 21 21 H 1.48493 * 109.47459 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46849 * 300.00404 * 19 17 15 23 23 H 1.08998 * 109.47133 * 61.73227 * 1 2 3 24 24 H 1.08995 * 109.46957 * 181.73344 * 1 2 3 25 25 H 1.09001 * 109.46743 * 301.73317 * 1 2 3 26 26 H 1.09003 * 109.46734 * 240.00837 * 2 1 3 27 27 H 1.08993 * 109.47104 * 120.00636 * 2 1 3 28 28 H 1.09001 * 109.46994 * 186.34811 * 4 3 2 29 29 H 1.09000 * 109.47852 * 306.35025 * 4 3 2 30 30 H 1.09005 * 109.46844 * 304.55968 * 5 4 3 31 31 H 1.08997 * 109.47734 * 64.55837 * 5 4 3 32 32 H 1.09001 * 109.47435 * 184.56812 * 5 4 3 33 33 H 1.08999 * 109.39241 * 289.15270 * 8 6 3 34 34 H 1.09003 * 109.39074 * 48.85582 * 8 6 3 35 35 H 1.08996 * 109.57616 * 303.21732 * 9 8 6 36 36 H 1.09004 * 109.67928 * 182.89791 * 9 8 6 37 37 H 1.09002 * 109.57436 * 293.45967 * 11 10 9 38 38 H 1.08993 * 109.57803 * 173.07229 * 11 10 9 39 39 H 1.09006 * 109.47160 * 305.88564 * 14 12 6 40 40 H 1.09001 * 109.47346 * 65.88528 * 14 12 6 41 41 H 0.97002 * 119.99944 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6599 2.0705 1.2484 5 6 2.4079 1.4269 2.4176 6 6 3.4705 1.4305 -0.2262 7 1 3.9665 0.7794 0.4937 8 6 3.9646 2.8609 -0.0325 9 6 5.4949 2.8843 0.0071 10 16 6.1323 2.3127 -1.5960 11 6 5.2804 0.7206 -1.8032 12 6 3.7743 0.9409 -1.6391 13 1 3.2497 0.0022 -1.8173 14 6 3.3004 1.9854 -2.6515 15 6 3.4666 1.4434 -4.0477 16 1 3.8696 0.4527 -4.1980 17 6 3.1033 2.2118 -5.1334 18 7 2.6121 3.4180 -4.9504 19 14 3.3102 1.5402 -6.8642 20 1 2.5033 0.3026 -7.0146 21 1 2.8501 2.5540 -7.8469 22 1 4.7420 1.2302 -7.1070 23 1 -0.3633 0.4867 -0.9051 24 1 -0.3633 -1.0272 0.0311 25 1 -0.3633 0.5405 0.8741 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.9341 3.1230 1.1770 29 1 0.5858 1.9853 1.4133 30 1 2.1967 0.3577 2.4396 31 1 3.4794 1.5830 2.2936 32 1 2.0803 1.8811 3.3527 33 1 3.6146 3.4798 -0.8587 34 1 3.5723 3.2556 0.9048 35 1 5.8499 2.2235 0.7979 36 1 5.8417 3.9001 0.1969 37 1 5.6312 0.0176 -1.0477 38 1 5.4852 0.3235 -2.7974 39 1 2.2495 2.2137 -2.4732 40 1 3.8932 2.8935 -2.5413 41 1 2.3562 3.9584 -5.7142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259689494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:07 Heat of formation + Delta-G solvation = -1.181137 kcal Electronic energy + Delta-G solvation = -18765.605374 eV Core-core repulsion = 16192.518009 eV Total energy + Delta-G solvation = -2573.087365 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.31677 -35.36034 -32.85969 -31.75225 -30.58457 -28.94499 -27.03236 -25.23476 -24.08385 -23.05328 -21.42937 -20.18194 -18.07230 -16.97073 -16.18534 -15.46569 -15.19094 -14.45364 -14.35293 -13.78396 -13.52143 -13.38879 -13.09675 -12.74678 -12.54834 -12.32721 -12.15144 -11.89189 -11.73261 -11.37892 -11.11641 -11.05183 -10.95676 -10.85549 -10.71511 -10.40528 -10.25053 -9.94419 -9.58062 -9.27850 -8.85017 -8.79705 -8.16512 -7.79799 -6.79939 -5.82310 -3.81591 2.42159 3.22244 3.41432 3.46094 3.47989 4.16118 4.58609 5.06824 5.10459 5.21410 5.38385 5.40135 5.42665 5.47385 5.54019 5.57543 5.67635 5.71208 5.72189 5.77600 5.85582 5.87622 5.96973 6.09414 6.12958 6.23963 6.29071 6.33546 6.50889 6.57331 6.69900 6.76733 7.19892 7.49540 7.54700 7.90573 8.15849 8.24535 8.60833 9.24161 9.79121 11.28811 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.018738 B = 0.008162 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.927065 B = 3429.618766 C = 4334.445960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 N -0.517 5.517 4 C 0.042 3.958 5 C -0.192 4.192 6 C 0.092 3.908 7 H 0.024 0.976 8 C -0.128 4.128 9 C -0.080 4.080 10 S -0.254 6.254 11 C -0.059 4.059 12 C -0.083 4.083 13 H 0.069 0.931 14 C 0.030 3.970 15 C -0.510 4.510 16 H 0.046 0.954 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.881 3.119 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.279 1.279 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.026 0.974 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.029 0.971 40 H 0.042 0.958 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 -4.076 13.872 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.240 5.240 4 C -0.086 4.086 5 C -0.251 4.251 6 C -0.016 4.016 7 H 0.042 0.958 8 C -0.167 4.167 9 C -0.229 4.229 10 S -0.027 6.027 11 C -0.208 4.208 12 C -0.103 4.103 13 H 0.087 0.913 14 C -0.007 4.007 15 C -0.549 4.549 16 H 0.064 0.936 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.710 3.290 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.205 1.205 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.773 -3.175 12.697 13.111 hybrid contribution -0.331 -1.471 0.442 1.571 sum 0.442 -4.646 13.139 13.943 Atomic orbital electron populations 1.21783 0.95259 1.00857 1.02504 1.22137 0.95810 0.89625 1.00598 1.62115 1.13475 1.15348 1.33049 1.22285 0.99846 0.99180 0.87334 1.22453 1.01519 1.01421 0.99690 1.21565 0.87068 0.95764 0.97217 0.95780 1.22009 0.93039 0.97928 1.03693 1.23322 0.98691 1.03867 0.97041 1.86739 1.59749 1.29048 1.27208 1.23485 0.98187 0.94238 1.04896 1.21427 0.92443 1.02030 0.94360 0.91329 1.19303 0.97393 0.93416 0.90590 1.21158 1.41434 1.00618 0.91687 0.93569 1.24895 0.95677 0.94939 0.98437 1.69949 1.43655 1.09345 1.30181 0.86842 0.78305 0.78537 0.85346 1.20604 1.21466 1.20500 0.91428 0.92934 0.93119 0.90088 0.95554 0.90238 0.90818 0.92734 0.92502 0.92645 0.88085 0.91435 0.91393 0.88491 0.92460 0.87261 0.95282 0.93974 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.88 37.16 0.37 -1.54 16 2 C 0.05 0.67 5.38 -3.82 -0.02 0.65 16 3 N -0.52 -8.24 4.17 -227.17 -0.95 -9.18 16 4 C 0.04 0.55 5.33 -3.83 -0.02 0.53 16 5 C -0.19 -2.18 8.99 37.16 0.33 -1.84 16 6 C 0.09 1.53 0.77 -68.14 -0.05 1.47 16 7 H 0.02 0.39 6.90 -51.93 -0.36 0.03 16 8 C -0.13 -2.07 4.29 -26.90 -0.12 -2.19 16 9 C -0.08 -1.23 6.45 37.21 0.24 -0.99 16 10 S -0.25 -4.82 20.67 -107.50 -2.22 -7.04 16 11 C -0.06 -1.11 5.76 37.21 0.21 -0.90 16 12 C -0.08 -1.63 2.04 -90.78 -0.19 -1.82 16 13 H 0.07 1.38 5.95 -51.93 -0.31 1.07 16 14 C 0.03 0.75 3.39 -27.89 -0.09 0.65 16 15 C -0.51 -14.14 8.44 -34.44 -0.29 -14.43 16 16 H 0.05 1.25 7.08 -52.48 -0.37 0.88 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.88 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.60 6.34 -51.93 -0.33 0.27 16 26 H 0.08 1.30 5.93 -51.93 -0.31 0.99 16 27 H 0.03 0.35 6.17 -51.93 -0.32 0.03 16 28 H 0.08 1.06 6.10 -51.93 -0.32 0.74 16 29 H 0.07 0.91 6.15 -51.93 -0.32 0.59 16 30 H 0.05 0.62 6.26 -51.93 -0.33 0.30 16 31 H 0.06 0.67 6.22 -51.93 -0.32 0.35 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 2.00 5.92 -51.93 -0.31 1.69 16 34 H 0.07 0.94 5.09 -51.93 -0.26 0.68 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.11 2.21 7.06 -51.93 -0.37 1.84 16 39 H 0.03 0.80 7.79 -51.93 -0.40 0.40 16 40 H 0.04 1.12 5.07 -51.93 -0.26 0.86 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -29.58 306.37 -9.12 -38.70 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.56 Total: 0.86 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 0.28 Total: -18.75 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.21 Total: -35.37 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: -4.82 SS G_CDS: -2.22 Total: -7.04 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.58 -9.12 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.520 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds