Wall clock time and date at job start Mon Mar 30 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47321 * 2 1 4 4 C 1.46901 * 110.99532 * 65.54153 * 3 2 1 5 5 C 1.52996 * 109.47227 * 66.35222 * 4 3 2 6 6 C 1.46896 * 111.00303 * 189.49375 * 3 2 1 7 7 H 1.09002 * 109.22048 * 306.91171 * 6 3 2 8 8 C 1.52577 * 109.22749 * 187.54708 * 6 3 2 9 9 C 1.53098 * 109.95691 * 169.00583 * 8 6 3 10 10 S 1.81741 * 108.84086 * 63.02556 * 9 8 6 11 11 C 1.81749 * 102.22245 * 306.73402 * 10 9 8 12 12 C 1.52587 * 109.22395 * 66.31156 * 6 3 2 13 13 H 1.08998 * 109.38625 * 311.14603 * 12 6 3 14 14 C 1.52995 * 109.39077 * 70.84922 * 12 6 3 15 15 C 1.50692 * 109.47402 * 185.88650 * 14 12 6 16 16 H 1.08007 * 119.99816 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00342 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99864 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00269 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46799 * 60.00256 * 19 17 15 21 21 H 1.48493 * 109.47459 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46849 * 300.00404 * 19 17 15 23 23 H 1.08998 * 109.47133 * 61.73227 * 1 2 3 24 24 H 1.08995 * 109.46957 * 181.73344 * 1 2 3 25 25 H 1.09001 * 109.46743 * 301.73317 * 1 2 3 26 26 H 1.09003 * 109.46734 * 240.00837 * 2 1 3 27 27 H 1.08993 * 109.47104 * 120.00636 * 2 1 3 28 28 H 1.09001 * 109.46994 * 186.34811 * 4 3 2 29 29 H 1.09000 * 109.47852 * 306.35025 * 4 3 2 30 30 H 1.09005 * 109.46844 * 304.55968 * 5 4 3 31 31 H 1.08997 * 109.47734 * 64.55837 * 5 4 3 32 32 H 1.09001 * 109.47435 * 184.56812 * 5 4 3 33 33 H 1.08999 * 109.39241 * 289.15270 * 8 6 3 34 34 H 1.09003 * 109.39074 * 48.85582 * 8 6 3 35 35 H 1.08996 * 109.57616 * 303.21732 * 9 8 6 36 36 H 1.09004 * 109.67928 * 182.89791 * 9 8 6 37 37 H 1.09002 * 109.57436 * 293.45967 * 11 10 9 38 38 H 1.08993 * 109.57803 * 173.07229 * 11 10 9 39 39 H 1.09006 * 109.47160 * 305.88564 * 14 12 6 40 40 H 1.09001 * 109.47346 * 65.88528 * 14 12 6 41 41 H 0.97002 * 119.99944 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6599 2.0705 1.2484 5 6 2.4079 1.4269 2.4176 6 6 3.4705 1.4305 -0.2262 7 1 3.9665 0.7794 0.4937 8 6 3.9646 2.8609 -0.0325 9 6 5.4949 2.8843 0.0071 10 16 6.1323 2.3127 -1.5960 11 6 5.2804 0.7206 -1.8032 12 6 3.7743 0.9409 -1.6391 13 1 3.2497 0.0022 -1.8173 14 6 3.3004 1.9854 -2.6515 15 6 3.4666 1.4434 -4.0477 16 1 3.8696 0.4527 -4.1980 17 6 3.1033 2.2118 -5.1334 18 7 2.6121 3.4180 -4.9504 19 14 3.3102 1.5402 -6.8642 20 1 2.5033 0.3026 -7.0146 21 1 2.8501 2.5540 -7.8469 22 1 4.7420 1.2302 -7.1070 23 1 -0.3633 0.4867 -0.9051 24 1 -0.3633 -1.0272 0.0311 25 1 -0.3633 0.5405 0.8741 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.9341 3.1230 1.1770 29 1 0.5858 1.9853 1.4133 30 1 2.1967 0.3577 2.4396 31 1 3.4794 1.5830 2.2936 32 1 2.0803 1.8811 3.3527 33 1 3.6146 3.4798 -0.8587 34 1 3.5723 3.2556 0.9048 35 1 5.8499 2.2235 0.7979 36 1 5.8417 3.9001 0.1969 37 1 5.6312 0.0176 -1.0477 38 1 5.4852 0.3235 -2.7974 39 1 2.2495 2.2137 -2.4732 40 1 3.8932 2.8935 -2.5413 41 1 2.3562 3.9584 -5.7142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259689494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:07 Heat of formation + Delta-G solvation = -18.530059 kcal Electronic energy + Delta-G solvation = -18766.357679 eV Core-core repulsion = 16192.518009 eV Total energy + Delta-G solvation = -2573.839670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60674 -36.81077 -34.69680 -33.30373 -31.78253 -30.12122 -28.97815 -26.57307 -25.19568 -24.92512 -22.77967 -21.48403 -19.50359 -18.76478 -17.56411 -17.14263 -16.55842 -16.22038 -15.63513 -15.09195 -14.97763 -14.88712 -14.31026 -14.13091 -14.00347 -13.56908 -13.45634 -13.31895 -13.01052 -12.85048 -12.83426 -12.52575 -12.40518 -12.22648 -12.16015 -12.08267 -11.72916 -11.40829 -11.19663 -11.00208 -10.69241 -10.47583 -10.26695 -8.96783 -8.31836 -8.04058 -6.09648 1.02103 1.40149 1.42239 1.48837 1.81160 2.47769 2.99631 3.29690 3.83469 3.93635 4.05110 4.13470 4.22626 4.28516 4.35344 4.41068 4.42546 4.51575 4.54524 4.60771 4.64670 4.74128 4.82295 4.90380 5.06896 5.07357 5.10059 5.17147 5.21965 5.26808 5.33250 5.43548 5.55061 5.69736 6.05782 6.14053 6.32417 6.38479 6.45087 7.08446 7.54866 9.06760 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.018738 B = 0.008162 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.927065 B = 3429.618766 C = 4334.445960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 N -0.545 5.545 4 C 0.041 3.959 5 C -0.183 4.183 6 C 0.102 3.898 7 H 0.045 0.955 8 C -0.122 4.122 9 C -0.062 4.062 10 S -0.312 6.312 11 C -0.049 4.049 12 C -0.077 4.077 13 H 0.063 0.937 14 C 0.048 3.952 15 C -0.521 4.521 16 H 0.048 0.952 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.944 3.056 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.087 0.913 39 H -0.008 1.008 40 H 0.022 0.978 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -5.197 15.866 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 N -0.268 5.268 4 C -0.087 4.087 5 C -0.242 4.242 6 C -0.007 4.007 7 H 0.063 0.937 8 C -0.161 4.161 9 C -0.211 4.211 10 S -0.086 6.086 11 C -0.198 4.198 12 C -0.097 4.097 13 H 0.081 0.919 14 C 0.011 3.989 15 C -0.560 4.560 16 H 0.066 0.934 17 C -0.192 4.192 18 N -0.570 5.570 19 Si 0.771 3.229 20 H -0.196 1.196 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.010 0.990 40 H 0.040 0.960 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.119 -4.313 14.699 15.359 hybrid contribution -0.484 -1.094 -0.140 1.204 sum 0.635 -5.406 14.559 15.543 Atomic orbital electron populations 1.21738 0.94324 1.01989 1.01774 1.22127 0.96578 0.88994 1.00397 1.62051 1.13019 1.16459 1.35313 1.22320 1.00659 0.98734 0.86940 1.22360 1.00993 1.01392 0.99448 1.21372 0.88055 0.96077 0.95159 0.93743 1.21915 0.93777 0.97069 1.03335 1.23395 0.97624 1.05292 0.94762 1.86913 1.60290 1.30174 1.31217 1.23373 0.97144 0.94454 1.04827 1.21258 0.93118 1.00039 0.95278 0.91933 1.18992 0.94769 0.94122 0.91023 1.21618 1.40412 1.00605 0.93316 0.93387 1.25716 0.95655 0.95250 1.02603 1.70093 1.45045 1.10680 1.31170 0.85822 0.78490 0.78094 0.80522 1.19603 1.21256 1.19866 0.94113 0.91048 0.91659 0.92306 0.93533 0.90741 0.90109 0.92576 0.92658 0.90720 0.92327 0.88581 0.88383 0.86885 0.89183 0.89430 0.98966 0.96012 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.88 71.98 0.71 -2.79 16 2 C 0.05 1.29 5.38 86.30 0.46 1.76 16 3 N -0.54 -16.81 4.17 -872.62 -3.64 -20.45 16 4 C 0.04 0.98 5.33 86.30 0.46 1.44 16 5 C -0.18 -3.46 8.99 71.98 0.65 -2.81 16 6 C 0.10 3.23 0.77 44.64 0.03 3.27 16 7 H 0.04 1.26 6.90 -2.39 -0.02 1.25 16 8 C -0.12 -3.80 4.29 30.49 0.13 -3.67 16 9 C -0.06 -1.77 6.45 72.02 0.46 -1.30 16 10 S -0.31 -11.74 20.67 -56.49 -1.17 -12.90 16 11 C -0.05 -1.82 5.76 72.01 0.41 -1.41 16 12 C -0.08 -3.04 2.04 -10.90 -0.02 -3.06 16 13 H 0.06 2.55 5.95 -2.39 -0.01 2.53 16 14 C 0.05 2.49 3.39 29.84 0.10 2.59 16 15 C -0.52 -29.67 8.44 25.60 0.22 -29.45 16 16 H 0.05 2.65 7.08 -2.91 -0.02 2.63 16 17 C 0.00 0.29 5.46 84.65 0.46 0.75 16 18 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 19 Si 0.94 45.92 29.54 68.60 2.03 47.95 16 20 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 23 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.42 6.34 -2.39 -0.02 1.40 16 26 H 0.06 1.88 5.93 -2.39 -0.01 1.86 16 27 H 0.05 1.11 6.17 -2.39 -0.01 1.09 16 28 H 0.07 1.85 6.10 -2.39 -0.01 1.83 16 29 H 0.08 1.82 6.15 -2.39 -0.01 1.80 16 30 H 0.06 1.06 6.26 -2.38 -0.01 1.04 16 31 H 0.05 1.07 6.22 -2.39 -0.01 1.05 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 2.36 5.92 -2.39 -0.01 2.35 16 34 H 0.10 2.44 5.09 -2.39 -0.01 2.43 16 35 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.09 3.58 7.06 -2.39 -0.02 3.56 16 39 H -0.01 -0.47 7.79 -2.38 -0.02 -0.49 16 40 H 0.02 1.21 5.07 -2.39 -0.01 1.20 16 41 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -65.95 306.37 2.59 -63.36 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 1.01 Total: 14.35 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.08 Total: -34.69 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -3.35 Total: -78.06 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: -11.74 SS G_CDS: -1.17 Total: -12.90 kcal Total: -65.95 2.59 -63.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.827 kcal (2) G-P(sol) polarization free energy of solvation -65.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds