Wall clock time and date at job start Mon Mar 30 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47414 * 2 1 4 4 C 1.46899 * 110.99868 * 66.04761 * 3 2 1 5 5 C 1.52999 * 109.47055 * 202.61338 * 4 3 2 6 6 C 1.46900 * 110.99989 * 190.00152 * 3 2 1 7 7 H 1.09006 * 109.18357 * 40.27209 * 6 3 2 8 8 C 1.52575 * 109.22524 * 280.89238 * 6 3 2 9 9 C 1.53099 * 109.95689 * 169.00293 * 8 6 3 10 10 S 1.81751 * 108.83763 * 63.02332 * 9 8 6 11 11 C 1.81746 * 102.22065 * 306.73150 * 10 9 8 12 12 C 1.52580 * 109.22560 * 159.65039 * 6 3 2 13 13 H 1.08998 * 109.30610 * 70.89816 * 12 6 3 14 14 C 1.52998 * 109.39116 * 311.14609 * 12 6 3 15 15 C 1.50704 * 109.46723 * 174.19712 * 14 12 6 16 16 H 1.07993 * 120.00085 * 0.02562 * 15 14 12 17 17 C 1.37883 * 119.99797 * 180.02562 * 15 14 12 18 18 N 1.31515 * 119.99815 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47158 * 90.00216 * 19 17 15 21 21 H 1.48503 * 109.46859 * 210.00211 * 19 17 15 22 22 H 1.48494 * 109.46983 * 329.99622 * 19 17 15 23 23 H 1.09004 * 109.46420 * 300.00019 * 1 2 3 24 24 H 1.09005 * 109.47291 * 59.99386 * 1 2 3 25 25 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46420 * 239.99981 * 2 1 3 27 27 H 1.08994 * 109.46855 * 120.00592 * 2 1 3 28 28 H 1.09005 * 109.46934 * 322.61570 * 4 3 2 29 29 H 1.08994 * 109.47085 * 82.61324 * 4 3 2 30 30 H 1.09003 * 109.47302 * 38.00894 * 5 4 3 31 31 H 1.09003 * 109.47167 * 158.00542 * 5 4 3 32 32 H 1.08999 * 109.47161 * 278.00891 * 5 4 3 33 33 H 1.09002 * 109.39438 * 48.85511 * 8 6 3 34 34 H 1.09001 * 109.30916 * 289.09824 * 8 6 3 35 35 H 1.08992 * 109.57800 * 303.21893 * 9 8 6 36 36 H 1.08997 * 109.58086 * 182.82575 * 9 8 6 37 37 H 1.08993 * 109.58245 * 293.46015 * 11 10 9 38 38 H 1.09000 * 109.57311 * 173.07646 * 11 10 9 39 39 H 1.08998 * 109.46857 * 54.19868 * 14 12 6 40 40 H 1.08994 * 109.47201 * 294.19673 * 14 12 6 41 41 H 0.96995 * 120.00213 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6703 2.0669 1.2533 5 6 1.6682 3.5801 1.0272 6 6 3.4686 1.4310 -0.2382 7 1 3.7298 0.6970 -1.0005 8 6 4.2016 1.0932 1.0566 9 6 5.6888 0.8675 0.7716 10 16 6.4065 2.4134 0.1403 11 6 5.2960 2.8174 -1.2405 12 6 3.8531 2.8236 -0.7290 13 1 3.7638 3.5331 0.0937 14 6 2.9139 3.2399 -1.8628 15 6 3.1990 4.6675 -2.2525 16 1 3.9728 5.2222 -1.7428 17 6 2.4717 5.2654 -3.2599 18 7 1.5290 4.5901 -3.8802 19 14 2.8255 7.0347 -3.7435 20 1 3.8563 7.0591 -4.8121 21 1 1.5795 7.6698 -4.2431 22 1 3.3215 7.7816 -2.5599 23 1 -0.3632 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.6801 1.7465 1.5774 29 1 2.4027 1.8152 2.0203 30 1 1.2592 3.7995 0.0409 31 1 1.0553 4.0606 1.7898 32 1 2.6886 3.9582 1.0897 33 1 3.7746 0.1882 1.4888 34 1 4.0891 1.9181 1.7602 35 1 5.8024 0.0809 0.0258 36 1 6.1971 0.5778 1.6912 37 1 5.4020 2.0688 -2.0256 38 1 5.5477 3.8017 -1.6356 39 1 1.8801 3.1541 -1.5282 40 1 3.0725 2.5898 -2.7231 41 1 1.0177 5.0105 -4.5891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259689503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:13 Heat of formation + Delta-G solvation = -2.330081 kcal Electronic energy + Delta-G solvation = -18797.701813 eV Core-core repulsion = 16224.564627 eV Total energy + Delta-G solvation = -2573.137187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.30634 -34.89106 -33.13121 -31.57351 -31.21384 -28.94849 -26.93200 -25.24236 -23.63586 -22.79592 -21.71623 -19.88221 -19.00396 -16.35774 -16.25571 -15.96160 -14.97005 -14.50332 -14.39871 -14.10136 -13.64225 -13.01097 -12.98240 -12.63812 -12.44584 -12.17818 -12.06843 -11.89289 -11.67096 -11.39433 -11.12937 -11.04662 -10.85112 -10.78716 -10.75455 -10.35638 -10.20109 -10.15321 -9.65539 -9.37832 -8.95767 -8.81201 -8.25789 -7.69688 -7.29081 -5.91006 -3.91835 2.19645 2.99769 3.35659 3.42720 3.45813 4.20388 4.51933 4.88967 5.09298 5.17513 5.22223 5.42158 5.44930 5.46289 5.56774 5.66391 5.72561 5.74717 5.81938 5.87311 5.93087 5.97392 6.07434 6.14421 6.25465 6.28803 6.37316 6.47156 6.52756 6.65502 6.87812 7.11249 7.19816 7.56404 7.59417 7.84261 8.03371 8.23815 8.52575 9.16570 9.70791 11.19436 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.008589 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.942762 B = 3259.296995 C = 4388.165057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 N -0.513 5.513 4 C 0.043 3.957 5 C -0.158 4.158 6 C 0.086 3.914 7 H 0.070 0.930 8 C -0.152 4.152 9 C -0.070 4.070 10 S -0.308 6.308 11 C -0.050 4.050 12 C -0.080 4.080 13 H 0.081 0.919 14 C 0.040 3.960 15 C -0.517 4.517 16 H 0.051 0.949 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.882 3.118 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.275 1.275 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.052 0.948 40 H 0.007 0.993 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -9.045 9.833 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 N -0.236 5.236 4 C -0.084 4.084 5 C -0.215 4.215 6 C -0.023 4.023 7 H 0.088 0.912 8 C -0.192 4.192 9 C -0.219 4.219 10 S -0.081 6.081 11 C -0.198 4.198 12 C -0.100 4.100 13 H 0.099 0.901 14 C 0.002 3.998 15 C -0.555 4.555 16 H 0.069 0.931 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.710 3.290 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.200 1.200 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.025 0.975 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.476 -8.237 9.681 12.950 hybrid contribution -0.384 -0.154 -0.174 0.449 sum 2.092 -8.392 9.507 12.852 Atomic orbital electron populations 1.21817 0.95156 1.00773 1.02823 1.22056 0.95973 0.89812 0.99831 1.62273 1.12839 1.14072 1.34412 1.22259 0.99767 0.96139 0.90280 1.22147 1.02101 0.93699 1.03532 1.21787 0.86368 0.99466 0.94697 0.91222 1.22441 0.94062 1.01873 1.00815 1.23242 0.98278 0.97084 1.03326 1.86661 1.45307 1.32125 1.44037 1.23672 0.95829 1.05696 0.94632 1.21684 0.92878 0.93903 1.01536 0.90071 1.19132 0.95457 0.94615 0.90644 1.21302 1.18254 0.98141 1.17816 0.93055 1.24947 0.95302 0.97274 0.96587 1.69971 1.22401 1.36482 1.24230 0.86760 0.77571 0.85898 0.78761 1.20917 1.21411 1.19982 0.92853 0.91334 0.92997 0.91199 0.95912 0.91637 0.94584 0.89219 0.93991 0.92079 0.91939 0.90213 0.90528 0.88813 0.90870 0.86708 0.92998 0.97494 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.89 37.16 0.37 -1.52 16 2 C 0.05 0.70 5.41 -3.82 -0.02 0.68 16 3 N -0.51 -8.29 3.06 -227.17 -0.69 -8.98 16 4 C 0.04 0.64 5.26 -3.82 -0.02 0.62 16 5 C -0.16 -2.66 8.65 37.16 0.32 -2.34 16 6 C 0.09 1.40 1.47 -68.15 -0.10 1.30 16 7 H 0.07 1.18 7.65 -51.93 -0.40 0.78 16 8 C -0.15 -2.09 3.77 -26.90 -0.10 -2.19 16 9 C -0.07 -0.94 6.46 37.21 0.24 -0.70 16 10 S -0.31 -5.07 22.33 -107.50 -2.40 -7.47 16 11 C -0.05 -0.94 5.59 37.21 0.21 -0.73 16 12 C -0.08 -1.54 0.98 -90.79 -0.09 -1.63 16 13 H 0.08 1.64 4.89 -51.93 -0.25 1.38 16 14 C 0.04 0.97 3.80 -27.88 -0.11 0.86 16 15 C -0.52 -13.82 8.37 -34.44 -0.29 -14.11 16 16 H 0.05 1.36 7.09 -52.49 -0.37 0.99 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 19 Si 0.88 21.47 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.05 0.65 6.24 -51.93 -0.32 0.33 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 27 H 0.02 0.28 7.17 -51.93 -0.37 -0.09 16 28 H 0.07 0.90 5.84 -51.93 -0.30 0.60 16 29 H 0.04 0.50 5.29 -51.93 -0.27 0.23 16 30 H 0.09 1.84 5.98 -51.93 -0.31 1.53 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.08 5.54 -51.93 -0.29 0.79 16 33 H 0.06 0.78 6.97 -51.93 -0.36 0.42 16 34 H 0.08 1.17 6.56 -51.93 -0.34 0.82 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.11 2.34 6.89 -51.93 -0.36 1.98 16 39 H 0.05 1.34 5.10 -51.93 -0.26 1.07 16 40 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 308.96 15.07 4.66 4.66 Total: -1.00 -28.00 308.96 -9.13 -37.13 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.72 Total: 1.84 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 0.31 Total: -18.18 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.04 Total: -34.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -5.07 SS G_CDS: -2.40 Total: -7.47 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.00 -9.13 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.802 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds