Wall clock time and date at job start Mon Mar 30 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47414 * 2 1 4 4 C 1.46899 * 110.99868 * 66.04761 * 3 2 1 5 5 C 1.52999 * 109.47055 * 202.61338 * 4 3 2 6 6 C 1.46900 * 110.99989 * 190.00152 * 3 2 1 7 7 H 1.09006 * 109.18357 * 40.27209 * 6 3 2 8 8 C 1.52575 * 109.22524 * 280.89238 * 6 3 2 9 9 C 1.53099 * 109.95689 * 169.00293 * 8 6 3 10 10 S 1.81751 * 108.83763 * 63.02332 * 9 8 6 11 11 C 1.81746 * 102.22065 * 306.73150 * 10 9 8 12 12 C 1.52580 * 109.22560 * 159.65039 * 6 3 2 13 13 H 1.08998 * 109.30610 * 70.89816 * 12 6 3 14 14 C 1.52998 * 109.39116 * 311.14609 * 12 6 3 15 15 C 1.50704 * 109.46723 * 174.19712 * 14 12 6 16 16 H 1.07993 * 120.00085 * 0.02562 * 15 14 12 17 17 C 1.37883 * 119.99797 * 180.02562 * 15 14 12 18 18 N 1.31515 * 119.99815 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47158 * 90.00216 * 19 17 15 21 21 H 1.48503 * 109.46859 * 210.00211 * 19 17 15 22 22 H 1.48494 * 109.46983 * 329.99622 * 19 17 15 23 23 H 1.09004 * 109.46420 * 300.00019 * 1 2 3 24 24 H 1.09005 * 109.47291 * 59.99386 * 1 2 3 25 25 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46420 * 239.99981 * 2 1 3 27 27 H 1.08994 * 109.46855 * 120.00592 * 2 1 3 28 28 H 1.09005 * 109.46934 * 322.61570 * 4 3 2 29 29 H 1.08994 * 109.47085 * 82.61324 * 4 3 2 30 30 H 1.09003 * 109.47302 * 38.00894 * 5 4 3 31 31 H 1.09003 * 109.47167 * 158.00542 * 5 4 3 32 32 H 1.08999 * 109.47161 * 278.00891 * 5 4 3 33 33 H 1.09002 * 109.39438 * 48.85511 * 8 6 3 34 34 H 1.09001 * 109.30916 * 289.09824 * 8 6 3 35 35 H 1.08992 * 109.57800 * 303.21893 * 9 8 6 36 36 H 1.08997 * 109.58086 * 182.82575 * 9 8 6 37 37 H 1.08993 * 109.58245 * 293.46015 * 11 10 9 38 38 H 1.09000 * 109.57311 * 173.07646 * 11 10 9 39 39 H 1.08998 * 109.46857 * 54.19868 * 14 12 6 40 40 H 1.08994 * 109.47201 * 294.19673 * 14 12 6 41 41 H 0.96995 * 120.00213 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6703 2.0669 1.2533 5 6 1.6682 3.5801 1.0272 6 6 3.4686 1.4310 -0.2382 7 1 3.7298 0.6970 -1.0005 8 6 4.2016 1.0932 1.0566 9 6 5.6888 0.8675 0.7716 10 16 6.4065 2.4134 0.1403 11 6 5.2960 2.8174 -1.2405 12 6 3.8531 2.8236 -0.7290 13 1 3.7638 3.5331 0.0937 14 6 2.9139 3.2399 -1.8628 15 6 3.1990 4.6675 -2.2525 16 1 3.9728 5.2222 -1.7428 17 6 2.4717 5.2654 -3.2599 18 7 1.5290 4.5901 -3.8802 19 14 2.8255 7.0347 -3.7435 20 1 3.8563 7.0591 -4.8121 21 1 1.5795 7.6698 -4.2431 22 1 3.3215 7.7816 -2.5599 23 1 -0.3632 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.6801 1.7465 1.5774 29 1 2.4027 1.8152 2.0203 30 1 1.2592 3.7995 0.0409 31 1 1.0553 4.0606 1.7898 32 1 2.6886 3.9582 1.0897 33 1 3.7746 0.1882 1.4888 34 1 4.0891 1.9181 1.7602 35 1 5.8024 0.0809 0.0258 36 1 6.1971 0.5778 1.6912 37 1 5.4020 2.0688 -2.0256 38 1 5.5477 3.8017 -1.6356 39 1 1.8801 3.1541 -1.5282 40 1 3.0725 2.5898 -2.7231 41 1 1.0177 5.0105 -4.5891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259689503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:12 Heat of formation + Delta-G solvation = -17.275381 kcal Electronic energy + Delta-G solvation = -18798.349890 eV Core-core repulsion = 16224.564627 eV Total energy + Delta-G solvation = -2573.785263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60861 -36.37472 -34.82485 -33.19056 -32.48316 -30.15940 -28.83589 -26.63881 -25.20201 -24.07763 -23.10235 -21.32081 -20.40641 -18.33927 -17.66481 -17.21734 -16.42922 -16.13203 -15.77283 -15.37783 -14.92193 -14.50553 -14.34672 -13.93780 -13.90729 -13.70870 -13.58035 -13.36100 -12.96132 -12.79856 -12.64401 -12.58895 -12.49062 -12.25250 -12.07187 -12.00807 -11.67621 -11.50366 -11.35724 -10.90214 -10.73966 -10.48942 -10.35299 -8.90224 -8.61774 -8.07907 -6.14547 0.91774 1.40085 1.41034 1.50832 1.66132 2.45898 3.01434 3.25604 3.69329 3.92309 4.01873 4.10639 4.24632 4.31341 4.31388 4.40867 4.44784 4.62259 4.63895 4.67915 4.70570 4.82100 4.82771 4.92037 4.96781 5.09685 5.13596 5.19327 5.21510 5.31308 5.41092 5.47338 5.59304 5.74824 6.00642 6.19302 6.35849 6.38907 6.44559 7.04832 7.51645 9.02765 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.008589 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.942762 B = 3259.296995 C = 4388.165057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 N -0.542 5.542 4 C 0.048 3.952 5 C -0.151 4.151 6 C 0.091 3.909 7 H 0.062 0.938 8 C -0.140 4.140 9 C -0.062 4.062 10 S -0.312 6.312 11 C -0.051 4.051 12 C -0.068 4.068 13 H 0.074 0.926 14 C 0.055 3.945 15 C -0.523 4.523 16 H 0.050 0.950 17 C 0.006 3.994 18 N -0.928 5.928 19 Si 0.944 3.056 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.267 1.267 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.033 0.967 40 H -0.030 1.030 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.628 -10.161 12.024 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 N -0.266 5.266 4 C -0.079 4.079 5 C -0.208 4.208 6 C -0.018 4.018 7 H 0.080 0.920 8 C -0.181 4.181 9 C -0.211 4.211 10 S -0.085 6.085 11 C -0.200 4.200 12 C -0.088 4.088 13 H 0.092 0.908 14 C 0.017 3.983 15 C -0.561 4.561 16 H 0.068 0.932 17 C -0.192 4.192 18 N -0.569 5.569 19 Si 0.771 3.229 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.192 1.192 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.141 0.859 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.051 0.949 40 H -0.011 1.011 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.182 -9.354 11.883 15.454 hybrid contribution -0.606 0.160 -0.835 1.044 sum 2.576 -9.194 11.047 14.602 Atomic orbital electron populations 1.21784 0.94595 1.02014 1.01703 1.22094 0.96391 0.88408 1.00643 1.62156 1.12737 1.16049 1.35630 1.22236 1.01210 0.94273 0.90206 1.22040 1.01260 0.95950 1.01583 1.21606 0.87272 0.96825 0.96078 0.91991 1.22313 0.93986 1.02893 0.98866 1.23392 0.97901 0.95091 1.04695 1.86645 1.44592 1.34583 1.42670 1.23411 0.96236 1.04368 0.95944 1.21449 0.92150 0.95992 0.99221 0.90801 1.18870 0.95767 0.92730 0.90953 1.21672 1.17599 0.99432 1.17401 0.93155 1.25737 0.95270 1.01315 0.96847 1.70102 1.23597 1.38235 1.24975 0.85761 0.77419 0.81172 0.78589 1.20390 1.21158 1.19164 0.92175 0.94190 0.90581 0.91872 0.93391 0.90148 0.92585 0.93550 0.92020 0.93290 0.89183 0.90537 0.89390 0.85885 0.91318 0.89240 0.94919 1.01142 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.89 71.98 0.71 -2.71 16 2 C 0.05 1.32 5.41 86.30 0.47 1.79 16 3 N -0.54 -17.07 3.06 -872.62 -2.67 -19.74 16 4 C 0.05 1.34 5.26 86.30 0.45 1.80 16 5 C -0.15 -5.08 8.65 71.98 0.62 -4.46 16 6 C 0.09 2.89 1.47 44.63 0.07 2.95 16 7 H 0.06 2.06 7.65 -2.38 -0.02 2.04 16 8 C -0.14 -3.40 3.77 30.49 0.12 -3.28 16 9 C -0.06 -1.44 6.46 72.02 0.46 -0.98 16 10 S -0.31 -9.77 22.33 -56.49 -1.26 -11.03 16 11 C -0.05 -1.94 5.59 72.01 0.40 -1.54 16 12 C -0.07 -2.67 0.98 -10.90 -0.01 -2.68 16 13 H 0.07 3.02 4.89 -2.39 -0.01 3.01 16 14 C 0.06 2.81 3.80 29.85 0.11 2.93 16 15 C -0.52 -29.05 8.37 25.60 0.21 -28.83 16 16 H 0.05 2.75 7.09 -2.91 -0.02 2.73 16 17 C 0.01 0.33 5.46 84.66 0.46 0.79 16 18 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 19 Si 0.94 45.00 29.54 68.60 2.03 47.02 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H 0.06 1.34 6.24 -2.38 -0.01 1.32 16 24 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.68 7.82 -2.38 -0.02 1.66 16 27 H 0.05 0.99 7.17 -2.39 -0.02 0.98 16 28 H 0.08 2.01 5.84 -2.38 -0.01 2.00 16 29 H 0.06 1.37 5.29 -2.39 -0.01 1.35 16 30 H 0.05 1.97 5.98 -2.39 -0.01 1.95 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.73 5.54 -2.39 -0.01 1.72 16 33 H 0.09 1.78 6.97 -2.39 -0.02 1.76 16 34 H 0.08 1.96 6.56 -2.39 -0.02 1.95 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.09 3.79 6.89 -2.39 -0.02 3.78 16 39 H 0.03 1.78 5.10 -2.39 -0.01 1.77 16 40 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 41 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -62.74 308.96 3.46 -59.28 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.00 Total: 14.92 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 4.08 Total: -34.23 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -2.38 Total: -75.96 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: -9.77 SS G_CDS: -1.26 Total: -11.03 kcal Total: -62.74 3.46 -59.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.004 kcal (2) G-P(sol) polarization free energy of solvation -62.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds