Wall clock time and date at job start Mon Mar 30 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.47079 * 2 1 4 4 C 1.46904 * 111.00311 * 67.51399 * 3 2 1 5 5 C 1.53000 * 109.46698 * 69.44239 * 4 3 2 6 6 C 1.46898 * 111.00234 * 191.47041 * 3 2 1 7 7 H 1.08997 * 109.30786 * 301.57366 * 6 3 2 8 8 C 1.53105 * 109.38995 * 61.32553 * 6 3 2 9 9 S 1.81748 * 108.83859 * 183.17520 * 8 6 3 10 10 C 1.81748 * 102.22180 * 306.73073 * 9 8 6 11 11 C 1.53100 * 108.83848 * 53.26964 * 10 9 8 12 12 C 1.52580 * 109.95617 * 296.97319 * 11 10 9 13 13 H 1.08995 * 109.22811 * 190.95718 * 12 11 10 14 14 C 1.53006 * 109.22683 * 310.35752 * 12 11 10 15 15 C 1.50702 * 109.46689 * 294.99783 * 14 12 11 16 16 H 1.08000 * 120.00539 * 0.02562 * 15 14 12 17 17 C 1.37882 * 119.99859 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99595 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47480 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47013 * 239.99850 * 19 17 15 22 22 H 1.48506 * 109.47043 * 120.00112 * 19 17 15 23 23 H 1.09000 * 109.46855 * 294.29893 * 1 2 3 24 24 H 1.08991 * 109.47162 * 54.30452 * 1 2 3 25 25 H 1.09001 * 109.46828 * 174.30513 * 1 2 3 26 26 H 1.09001 * 109.46770 * 239.99968 * 2 1 3 27 27 H 1.08998 * 109.47291 * 120.00151 * 2 1 3 28 28 H 1.09002 * 109.47400 * 189.44423 * 4 3 2 29 29 H 1.09000 * 109.46699 * 309.44591 * 4 3 2 30 30 H 1.09001 * 109.46935 * 185.71752 * 5 4 3 31 31 H 1.09003 * 109.47680 * 305.71484 * 5 4 3 32 32 H 1.09004 * 109.46855 * 65.71608 * 5 4 3 33 33 H 1.08998 * 109.57537 * 63.36664 * 8 6 3 34 34 H 1.08996 * 109.57306 * 302.98013 * 8 6 3 35 35 H 1.08996 * 109.57668 * 293.46487 * 10 9 8 36 36 H 1.09000 * 109.57417 * 173.07725 * 10 9 8 37 37 H 1.09001 * 109.38924 * 176.82593 * 11 10 9 38 38 H 1.08993 * 109.39278 * 57.12248 * 11 10 9 39 39 H 1.09000 * 109.47355 * 175.00184 * 14 12 11 40 40 H 1.08998 * 109.47146 * 54.99783 * 14 12 11 41 41 H 0.96999 * 120.00353 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7007 2.0562 1.2672 5 6 2.5434 1.4505 2.3913 6 6 3.4623 1.4333 -0.2727 7 1 3.9913 0.8500 0.4809 8 6 3.7378 0.8430 -1.6583 9 16 5.5329 0.8234 -1.9415 10 6 5.9933 2.5504 -1.6121 11 6 5.4640 2.9485 -0.2318 12 6 3.9397 2.8816 -0.2195 13 1 3.5672 3.3483 0.6924 14 6 3.3923 3.6374 -1.4320 15 6 3.7310 5.1005 -1.3067 16 1 4.2819 5.4557 -0.4484 17 6 3.3384 5.9855 -2.2884 18 7 2.6688 5.5527 -3.3343 19 14 3.7588 7.7989 -2.1334 20 1 4.5130 8.0265 -0.8746 21 1 2.5068 8.5973 -2.1122 22 1 4.5914 8.2147 -3.2907 23 1 -0.3633 0.4229 0.9366 24 1 -0.3633 0.5996 -0.8345 25 1 -0.3633 -1.0226 -0.1020 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.9213 3.1201 1.1804 29 1 0.6429 1.9217 1.4932 30 1 2.2354 1.8764 3.3462 31 1 2.3993 0.3702 2.4120 32 1 3.5961 1.6733 2.2167 33 1 3.2546 1.4560 -2.4191 34 1 3.3494 -0.1744 -1.7055 35 1 5.5541 3.1968 -2.3720 36 1 7.0787 2.6487 -1.6293 37 1 5.7834 3.9648 -0.0010 38 1 5.8622 2.2663 0.5191 39 1 2.3098 3.5176 -1.4765 40 1 3.8399 3.2374 -2.3418 41 1 2.4509 4.6109 -3.4150 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:15 Heat of formation + Delta-G solvation = -9.069511 kcal Electronic energy + Delta-G solvation = -18861.724309 eV Core-core repulsion = 16288.294879 eV Total energy + Delta-G solvation = -2573.429430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.36751 -35.92124 -32.70472 -31.46526 -31.02424 -28.20411 -27.53476 -25.51029 -23.67726 -22.82780 -22.43322 -19.88581 -18.10127 -16.79097 -16.66946 -15.58128 -15.24535 -14.60870 -14.31645 -14.06503 -13.71526 -13.30414 -13.15967 -12.73938 -12.68212 -12.38756 -12.08311 -11.81701 -11.68537 -11.48873 -11.32134 -11.13727 -10.97510 -10.90595 -10.64457 -10.39716 -10.14928 -10.00828 -9.84931 -9.39121 -9.20170 -8.44026 -8.26445 -7.90753 -7.26251 -6.29885 -3.98690 2.26149 2.94027 3.44601 3.48079 3.60401 4.23344 4.56426 4.97263 5.09600 5.20156 5.34543 5.38730 5.43406 5.46183 5.48883 5.55088 5.57598 5.62599 5.72040 5.75138 5.84941 6.04085 6.08959 6.14197 6.15026 6.24313 6.25780 6.31498 6.45005 6.51180 6.61412 6.71176 7.03347 7.39657 7.40678 7.52517 7.67555 8.27839 8.53015 8.95138 9.72508 11.10353 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.008058 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.530971 B = 3473.931203 C = 4157.762103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 N -0.521 5.521 4 C 0.046 3.954 5 C -0.190 4.190 6 C 0.093 3.907 7 H 0.042 0.958 8 C -0.069 4.069 9 S -0.296 6.296 10 C -0.071 4.071 11 C -0.099 4.099 12 C -0.084 4.084 13 H 0.072 0.928 14 C 0.017 3.983 15 C -0.597 4.597 16 H 0.046 0.954 17 C 0.016 3.984 18 N -0.914 5.914 19 Si 1.068 2.932 20 H -0.291 1.291 21 H -0.289 1.289 22 H -0.289 1.289 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.022 0.978 40 H 0.010 0.990 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -9.946 8.116 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 N -0.245 5.245 4 C -0.082 4.082 5 C -0.249 4.249 6 C -0.017 4.017 7 H 0.060 0.940 8 C -0.217 4.217 9 S -0.070 6.070 10 C -0.219 4.219 11 C -0.138 4.138 12 C -0.102 4.102 13 H 0.090 0.910 14 C -0.020 4.020 15 C -0.635 4.635 16 H 0.064 0.936 17 C -0.188 4.188 18 N -0.551 5.551 19 Si 0.897 3.103 20 H -0.217 1.217 21 H -0.215 1.215 22 H -0.215 1.215 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.028 0.972 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.634 -9.087 6.658 11.283 hybrid contribution -0.163 -0.921 1.777 2.008 sum 0.470 -10.008 8.435 13.097 Atomic orbital electron populations 1.21778 0.95131 1.01074 1.02410 1.22168 0.95959 0.90070 1.00429 1.62187 1.14672 1.14972 1.32714 1.22229 0.99122 1.00123 0.86706 1.22428 1.01679 1.00936 0.99878 1.21867 0.87530 0.98009 0.94250 0.94008 1.23550 0.93093 1.04049 1.01026 1.86352 1.10064 1.18292 1.92291 1.23553 1.02922 0.93004 1.02430 1.21557 0.96163 1.01701 0.94414 1.21176 0.93998 0.92417 1.02659 0.91013 1.19369 0.96416 0.94815 0.91399 1.22089 1.39298 0.93171 1.08936 0.93575 1.25706 0.94516 1.05512 0.93088 1.70705 1.36974 1.18207 1.29180 0.83561 0.76270 0.75167 0.75287 1.21694 1.21509 1.21512 0.92954 0.91597 0.92822 0.90936 0.95072 0.89414 0.91002 0.92472 0.93013 0.92199 0.88208 0.89043 0.87500 0.89210 0.90251 0.93164 0.95984 0.97190 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.75 37.16 0.36 -1.37 16 2 C 0.04 0.55 5.41 -3.83 -0.02 0.53 16 3 N -0.52 -8.27 4.14 -226.84 -0.94 -9.21 16 4 C 0.05 0.69 5.38 -3.82 -0.02 0.66 16 5 C -0.19 -2.45 8.97 37.16 0.33 -2.12 16 6 C 0.09 1.56 0.89 -67.87 -0.06 1.50 16 7 H 0.04 0.69 6.59 -51.93 -0.34 0.35 16 8 C -0.07 -1.18 5.20 37.21 0.19 -0.99 16 9 S -0.30 -5.15 22.33 -107.50 -2.40 -7.55 16 10 C -0.07 -1.30 6.00 37.21 0.22 -1.08 16 11 C -0.10 -1.79 5.03 -26.90 -0.14 -1.93 16 12 C -0.08 -1.62 1.51 -91.05 -0.14 -1.76 16 13 H 0.07 1.43 5.43 -51.93 -0.28 1.14 16 14 C 0.02 0.40 2.37 -27.88 -0.07 0.33 16 15 C -0.60 -16.03 8.49 -34.44 -0.29 -16.32 16 16 H 0.05 1.23 7.07 -52.49 -0.37 0.86 16 17 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 18 N -0.91 -27.56 13.65 55.43 0.76 -26.80 16 19 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H 0.05 0.59 6.68 -51.93 -0.35 0.25 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.96 5.77 -51.93 -0.30 0.66 16 27 H 0.03 0.39 6.24 -51.93 -0.32 0.07 16 28 H 0.09 1.51 6.31 -51.93 -0.33 1.18 16 29 H 0.07 0.97 6.28 -51.93 -0.33 0.65 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.63 6.33 -51.93 -0.33 0.30 16 32 H 0.06 0.83 6.30 -51.93 -0.33 0.50 16 33 H 0.10 1.96 6.28 -51.93 -0.33 1.63 16 34 H 0.09 1.40 6.06 -51.93 -0.31 1.08 16 35 H 0.11 2.29 6.00 -51.93 -0.31 1.97 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.51 7.26 -51.93 -0.38 1.13 16 38 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 39 H 0.02 0.58 7.63 -51.93 -0.40 0.18 16 40 H 0.01 0.26 4.38 -51.93 -0.23 0.03 16 41 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 LS Contribution 304.25 15.07 4.58 4.58 Total: -1.00 -28.53 304.25 -9.23 -37.76 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.43 Total: 3.32 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 0.28 Total: -22.19 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.18 Total: -36.01 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -2.40 Total: -7.55 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.53 -9.23 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.686 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds