Wall clock time and date at job start Mon Mar 30 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.47079 * 2 1 4 4 C 1.46904 * 111.00311 * 67.51399 * 3 2 1 5 5 C 1.53000 * 109.46698 * 69.44239 * 4 3 2 6 6 C 1.46898 * 111.00234 * 191.47041 * 3 2 1 7 7 H 1.08997 * 109.30786 * 301.57366 * 6 3 2 8 8 C 1.53105 * 109.38995 * 61.32553 * 6 3 2 9 9 S 1.81748 * 108.83859 * 183.17520 * 8 6 3 10 10 C 1.81748 * 102.22180 * 306.73073 * 9 8 6 11 11 C 1.53100 * 108.83848 * 53.26964 * 10 9 8 12 12 C 1.52580 * 109.95617 * 296.97319 * 11 10 9 13 13 H 1.08995 * 109.22811 * 190.95718 * 12 11 10 14 14 C 1.53006 * 109.22683 * 310.35752 * 12 11 10 15 15 C 1.50702 * 109.46689 * 294.99783 * 14 12 11 16 16 H 1.08000 * 120.00539 * 0.02562 * 15 14 12 17 17 C 1.37882 * 119.99859 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99595 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47480 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47013 * 239.99850 * 19 17 15 22 22 H 1.48506 * 109.47043 * 120.00112 * 19 17 15 23 23 H 1.09000 * 109.46855 * 294.29893 * 1 2 3 24 24 H 1.08991 * 109.47162 * 54.30452 * 1 2 3 25 25 H 1.09001 * 109.46828 * 174.30513 * 1 2 3 26 26 H 1.09001 * 109.46770 * 239.99968 * 2 1 3 27 27 H 1.08998 * 109.47291 * 120.00151 * 2 1 3 28 28 H 1.09002 * 109.47400 * 189.44423 * 4 3 2 29 29 H 1.09000 * 109.46699 * 309.44591 * 4 3 2 30 30 H 1.09001 * 109.46935 * 185.71752 * 5 4 3 31 31 H 1.09003 * 109.47680 * 305.71484 * 5 4 3 32 32 H 1.09004 * 109.46855 * 65.71608 * 5 4 3 33 33 H 1.08998 * 109.57537 * 63.36664 * 8 6 3 34 34 H 1.08996 * 109.57306 * 302.98013 * 8 6 3 35 35 H 1.08996 * 109.57668 * 293.46487 * 10 9 8 36 36 H 1.09000 * 109.57417 * 173.07725 * 10 9 8 37 37 H 1.09001 * 109.38924 * 176.82593 * 11 10 9 38 38 H 1.08993 * 109.39278 * 57.12248 * 11 10 9 39 39 H 1.09000 * 109.47355 * 175.00184 * 14 12 11 40 40 H 1.08998 * 109.47146 * 54.99783 * 14 12 11 41 41 H 0.96999 * 120.00353 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7007 2.0562 1.2672 5 6 2.5434 1.4505 2.3913 6 6 3.4623 1.4333 -0.2727 7 1 3.9913 0.8500 0.4809 8 6 3.7378 0.8430 -1.6583 9 16 5.5329 0.8234 -1.9415 10 6 5.9933 2.5504 -1.6121 11 6 5.4640 2.9485 -0.2318 12 6 3.9397 2.8816 -0.2195 13 1 3.5672 3.3483 0.6924 14 6 3.3923 3.6374 -1.4320 15 6 3.7310 5.1005 -1.3067 16 1 4.2819 5.4557 -0.4484 17 6 3.3384 5.9855 -2.2884 18 7 2.6688 5.5527 -3.3343 19 14 3.7588 7.7989 -2.1334 20 1 4.5130 8.0265 -0.8746 21 1 2.5068 8.5973 -2.1122 22 1 4.5914 8.2147 -3.2907 23 1 -0.3633 0.4229 0.9366 24 1 -0.3633 0.5996 -0.8345 25 1 -0.3633 -1.0226 -0.1020 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.9213 3.1201 1.1804 29 1 0.6429 1.9217 1.4932 30 1 2.2354 1.8764 3.3462 31 1 2.3993 0.3702 2.4120 32 1 3.5961 1.6733 2.2167 33 1 3.2546 1.4560 -2.4191 34 1 3.3494 -0.1744 -1.7055 35 1 5.5541 3.1968 -2.3720 36 1 7.0787 2.6487 -1.6293 37 1 5.7834 3.9648 -0.0010 38 1 5.8622 2.2663 0.5191 39 1 2.3098 3.5176 -1.4765 40 1 3.8399 3.2374 -2.3418 41 1 2.4509 4.6109 -3.4150 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259786130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:15 Heat of formation + Delta-G solvation = -25.105715 kcal Electronic energy + Delta-G solvation = -18862.419691 eV Core-core repulsion = 16288.294879 eV Total energy + Delta-G solvation = -2574.124812 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73057 -37.39744 -34.75878 -32.58333 -32.32127 -29.99170 -28.72770 -27.22524 -25.15016 -24.44961 -23.81876 -21.18942 -19.66111 -18.61944 -18.12403 -16.94118 -16.53456 -16.16628 -15.76137 -15.67167 -15.30612 -14.78811 -14.38751 -14.21307 -13.96722 -13.83990 -13.34755 -13.20017 -13.17895 -12.98630 -12.75259 -12.56864 -12.41537 -12.37405 -12.14108 -11.94557 -11.58991 -11.52173 -11.40154 -11.09919 -10.69521 -10.46083 -10.42155 -9.10936 -8.69056 -8.57022 -6.25448 0.84276 1.49717 1.51809 1.60645 1.75366 2.59053 3.03506 3.26318 3.64445 3.75878 3.98296 4.01849 4.09310 4.25664 4.28521 4.32753 4.36184 4.38380 4.53426 4.59564 4.66996 4.70369 4.78918 4.80096 4.94402 4.94862 5.02734 5.07968 5.12330 5.18435 5.22440 5.34750 5.45465 5.55896 5.67015 6.12364 6.18530 6.26093 6.33523 6.71796 7.54255 8.82988 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.008058 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.530971 B = 3473.931203 C = 4157.762103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.042 3.958 3 N -0.544 5.544 4 C 0.047 3.953 5 C -0.181 4.181 6 C 0.105 3.895 7 H 0.057 0.943 8 C -0.068 4.068 9 S -0.278 6.278 10 C -0.072 4.072 11 C -0.095 4.095 12 C -0.077 4.077 13 H 0.066 0.934 14 C 0.033 3.967 15 C -0.597 4.597 16 H 0.047 0.953 17 C -0.039 4.039 18 N -0.943 5.943 19 Si 1.113 2.887 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.077 0.923 39 H -0.011 1.011 40 H -0.006 1.006 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -11.022 9.890 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 N -0.269 5.269 4 C -0.080 4.080 5 C -0.239 4.239 6 C -0.005 4.005 7 H 0.075 0.925 8 C -0.216 4.216 9 S -0.052 6.052 10 C -0.220 4.220 11 C -0.134 4.134 12 C -0.096 4.096 13 H 0.085 0.915 14 C -0.004 4.004 15 C -0.636 4.636 16 H 0.065 0.935 17 C -0.237 4.237 18 N -0.581 5.581 19 Si 0.936 3.064 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.209 1.209 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.008 0.992 40 H 0.012 0.988 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.314 -10.183 8.450 13.297 hybrid contribution -0.412 -0.631 1.217 1.431 sum 0.902 -10.813 9.667 14.533 Atomic orbital electron populations 1.21745 0.94133 1.02195 1.01832 1.22241 0.96752 0.88463 1.01102 1.62143 1.13974 1.16999 1.33788 1.22164 1.00317 0.98394 0.87159 1.22325 1.00455 1.01590 0.99568 1.21652 0.88548 0.95993 0.94270 0.92538 1.23531 0.93027 1.04752 1.00275 1.86247 1.09749 1.16769 1.92451 1.23459 1.04104 0.93222 1.01204 1.21524 0.95054 1.01806 0.95047 1.21049 0.94911 0.93750 0.99884 0.91528 1.19122 0.94252 0.94059 0.92971 1.22474 1.38000 0.94759 1.08326 0.93483 1.27135 0.94055 1.09740 0.92731 1.70845 1.39326 1.17238 1.30722 0.82980 0.76505 0.70581 0.76331 1.19403 1.21067 1.20925 0.92411 0.93603 0.90520 0.90949 0.93484 0.92559 0.89809 0.90966 0.91719 0.93200 0.91477 0.86765 0.91368 0.86976 0.91379 0.90438 0.99222 0.98798 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.75 71.98 0.70 -2.39 16 2 C 0.04 1.02 5.41 86.31 0.47 1.49 16 3 N -0.54 -16.90 4.14 -871.59 -3.61 -20.51 16 4 C 0.05 1.36 5.38 86.30 0.46 1.83 16 5 C -0.18 -4.20 8.97 71.98 0.65 -3.56 16 6 C 0.10 3.43 0.89 44.81 0.04 3.47 16 7 H 0.06 1.72 6.59 -2.39 -0.02 1.71 16 8 C -0.07 -2.28 5.20 72.02 0.37 -1.91 16 9 S -0.28 -9.33 22.33 -56.49 -1.26 -10.60 16 10 C -0.07 -2.59 6.00 72.02 0.43 -2.16 16 11 C -0.10 -3.35 5.03 30.49 0.15 -3.20 16 12 C -0.08 -2.99 1.51 -11.07 -0.02 -3.00 16 13 H 0.07 2.66 5.43 -2.39 -0.01 2.64 16 14 C 0.03 1.62 2.37 29.85 0.07 1.69 16 15 C -0.60 -32.85 8.49 25.60 0.22 -32.64 16 16 H 0.05 2.53 7.07 -2.91 -0.02 2.51 16 17 C -0.04 -2.27 5.46 84.66 0.46 -1.81 16 18 N -0.94 -58.81 13.65 21.45 0.29 -58.52 16 19 Si 1.11 50.87 29.90 68.60 2.05 52.92 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H 0.06 1.19 6.68 -2.39 -0.02 1.17 16 24 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.76 5.77 -2.39 -0.01 1.75 16 27 H 0.05 1.02 6.24 -2.39 -0.01 1.01 16 28 H 0.06 1.96 6.31 -2.39 -0.02 1.94 16 29 H 0.08 2.17 6.28 -2.39 -0.01 2.15 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.35 6.33 -2.39 -0.02 1.33 16 32 H 0.05 1.26 6.30 -2.39 -0.02 1.24 16 33 H 0.07 2.72 6.28 -2.39 -0.01 2.71 16 34 H 0.11 3.31 6.06 -2.39 -0.01 3.30 16 35 H 0.07 3.00 6.00 -2.39 -0.01 2.98 16 36 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.07 2.54 7.26 -2.39 -0.02 2.53 16 38 H 0.08 2.34 8.06 -2.39 -0.02 2.32 16 39 H -0.01 -0.59 7.63 -2.39 -0.02 -0.61 16 40 H -0.01 -0.32 4.38 -2.39 -0.01 -0.33 16 41 H 0.25 16.20 7.22 -92.71 -0.67 15.53 16 Total: -1.00 -62.78 304.25 2.60 -60.18 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 1.11 Total: 18.71 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 4.01 Total: -42.19 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -3.31 Total: -79.03 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.92 kcal Atomic # 16 Polarization: -9.33 SS G_CDS: -1.26 Total: -10.60 kcal Total: -62.78 2.60 -60.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.076 kcal (2) G-P(sol) polarization free energy of solvation -62.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds