Wall clock time and date at job start Mon Mar 30 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46899 * 109.46987 * 2 1 4 4 C 1.46903 * 111.00054 * 77.75699 * 3 2 1 5 5 C 1.53007 * 109.47042 * 183.78889 * 4 3 2 6 6 C 1.46899 * 111.00074 * 201.71119 * 3 2 1 7 7 H 1.09000 * 109.39177 * 155.63715 * 6 3 2 8 8 C 1.53095 * 109.38989 * 35.83491 * 6 3 2 9 9 S 1.81758 * 108.83679 * 176.74549 * 8 6 3 10 10 C 1.81742 * 102.15744 * 53.39961 * 9 8 6 11 11 C 1.53102 * 108.84215 * 306.68402 * 10 9 8 12 12 C 1.52582 * 109.38954 * 275.43717 * 6 3 2 13 13 H 1.08997 * 109.22750 * 311.10584 * 12 6 3 14 14 C 1.52998 * 109.22432 * 70.50417 * 12 6 3 15 15 C 1.50699 * 109.47265 * 175.78425 * 14 12 6 16 16 H 1.08002 * 120.00138 * 359.97438 * 15 14 12 17 17 C 1.37877 * 120.00041 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00177 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99812 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47227 * 59.99963 * 19 17 15 21 21 H 1.48500 * 109.47148 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47314 * 300.00035 * 19 17 15 23 23 H 1.09000 * 109.46946 * 299.99692 * 1 2 3 24 24 H 1.08996 * 109.47242 * 60.00195 * 1 2 3 25 25 H 1.09005 * 109.46857 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46946 * 240.00308 * 2 1 3 27 27 H 1.08996 * 109.47242 * 119.99804 * 2 1 3 28 28 H 1.09001 * 109.46984 * 303.78807 * 4 3 2 29 29 H 1.08993 * 109.46876 * 63.78913 * 4 3 2 30 30 H 1.08992 * 109.46727 * 295.00871 * 5 4 3 31 31 H 1.08999 * 109.46794 * 55.00829 * 5 4 3 32 32 H 1.09003 * 109.46871 * 175.00948 * 5 4 3 33 33 H 1.08996 * 109.57872 * 296.63468 * 8 6 3 34 34 H 1.09003 * 109.57343 * 57.02115 * 8 6 3 35 35 H 1.09006 * 109.57490 * 186.88137 * 10 9 8 36 36 H 1.08998 * 109.57704 * 66.49935 * 10 9 8 37 37 H 1.08994 * 109.39224 * 302.87632 * 11 10 9 38 38 H 1.08999 * 109.30708 * 183.12047 * 11 10 9 39 39 H 1.09007 * 109.47209 * 295.78436 * 14 12 6 40 40 H 1.09005 * 109.47518 * 55.78254 * 14 12 6 41 41 H 0.96995 * 120.00107 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9210 1.9783 1.3403 5 6 2.3499 3.4458 1.2812 6 6 3.3964 1.4567 -0.5073 7 1 3.5851 2.4550 -0.9022 8 6 3.5811 0.4253 -1.6236 9 16 5.2576 0.5924 -2.3055 10 6 6.2909 0.4696 -0.8154 11 6 5.8018 1.4946 0.2113 12 6 4.3713 1.1695 0.6308 13 1 4.1040 1.7783 1.4945 14 6 4.2812 -0.3100 1.0101 15 6 5.3141 -0.6227 2.0619 16 1 5.9696 0.1558 2.4234 17 6 5.4231 -1.9030 2.5619 18 7 4.6253 -2.8511 2.1214 19 14 6.7039 -2.2907 3.8652 20 1 6.4549 -1.4558 5.0678 21 1 6.6165 -3.7267 4.2334 22 1 8.0581 -1.9978 3.3310 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.8908 1.9147 1.6908 29 1 2.5723 1.4367 2.0261 30 1 3.4055 3.5053 1.0164 31 1 1.7568 3.9677 0.5302 32 1 2.1929 3.9097 2.2550 33 1 3.4484 -0.5782 -1.2193 34 1 2.8485 0.6039 -2.4106 35 1 7.3295 0.6777 -1.0730 36 1 6.2105 -0.5336 -0.3969 37 1 5.8323 2.4910 -0.2293 38 1 6.4509 1.4659 1.0865 39 1 3.2870 -0.5248 1.4020 40 1 4.4641 -0.9231 0.1276 41 1 4.7022 -3.7519 2.4729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:18 Heat of formation + Delta-G solvation = 7.562742 kcal Electronic energy + Delta-G solvation = -19123.206067 eV Core-core repulsion = 16550.497865 eV Total energy + Delta-G solvation = -2572.708202 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.64623 -35.16046 -32.59277 -31.89892 -30.70069 -28.49962 -27.43096 -25.82442 -23.42493 -22.49438 -22.41909 -19.89496 -17.88583 -16.60143 -16.32938 -15.72157 -14.83745 -14.57108 -14.51862 -14.25187 -13.70563 -13.34746 -12.83565 -12.53831 -12.19213 -12.13585 -11.91354 -11.90768 -11.38054 -11.36263 -11.19661 -11.08621 -10.92356 -10.83473 -10.46561 -10.39118 -10.15582 -10.11549 -9.69069 -9.31461 -9.09770 -9.06462 -8.42133 -7.61615 -7.14078 -6.09301 -4.11170 2.37095 3.06701 3.25546 3.31421 3.33122 4.37248 4.44952 5.14740 5.26528 5.31895 5.37923 5.56853 5.58739 5.63154 5.66504 5.77895 5.83140 5.87726 5.94097 5.98283 6.11213 6.18617 6.23789 6.32972 6.35199 6.42041 6.43780 6.47730 6.60777 6.65548 6.75062 6.80965 7.05960 7.51308 7.53796 7.58086 7.69140 7.88734 8.32443 8.93751 9.52941 11.01043 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.009030 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.934380 B = 3100.122473 C = 3709.244075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.020 3.980 3 N -0.525 5.525 4 C 0.040 3.960 5 C -0.149 4.149 6 C 0.091 3.909 7 H 0.080 0.920 8 C -0.077 4.077 9 S -0.299 6.299 10 C -0.071 4.071 11 C -0.095 4.095 12 C -0.132 4.132 13 H 0.078 0.922 14 C 0.016 3.984 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.023 0.977 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 7.846 -4.069 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 N -0.250 5.250 4 C -0.088 4.088 5 C -0.206 4.206 6 C -0.019 4.019 7 H 0.098 0.902 8 C -0.224 4.224 9 S -0.073 6.073 10 C -0.219 4.219 11 C -0.134 4.134 12 C -0.151 4.151 13 H 0.096 0.904 14 C -0.021 4.021 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.942 8.054 -5.454 10.495 hybrid contribution 0.905 -1.011 2.559 2.897 sum -3.037 7.043 -2.895 8.198 Atomic orbital electron populations 1.21747 0.96004 1.00720 1.01450 1.22686 0.95033 0.89718 1.03317 1.62607 1.20176 1.18418 1.23761 1.22205 1.00889 0.95148 0.90574 1.21838 1.01751 0.95965 1.01094 1.21948 0.87899 0.97999 0.94029 0.90229 1.23848 0.94287 1.03637 1.00673 1.86356 1.05059 1.96764 1.19077 1.23540 0.98653 1.05675 0.93986 1.21497 0.97530 0.96243 0.98157 1.21984 0.93584 1.02095 0.97478 0.90441 1.19606 0.97641 0.88239 0.96579 1.21178 1.17997 0.94575 1.21881 0.92696 1.24976 0.95923 0.96562 0.96652 1.69925 1.38045 1.01954 1.43182 0.86748 0.82237 0.77281 0.82313 1.20356 1.21339 1.20267 0.93318 0.92787 0.92873 0.90261 0.91580 0.91571 0.92571 0.92381 0.92450 0.92900 0.87965 0.88588 0.89543 0.87162 0.93189 0.90604 0.95492 0.95930 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 10.05 37.16 0.37 -1.61 16 2 C 0.02 0.33 4.35 -3.82 -0.02 0.32 16 3 N -0.53 -8.45 4.63 -226.84 -1.05 -9.50 16 4 C 0.04 0.62 4.88 -3.82 -0.02 0.60 16 5 C -0.15 -2.02 9.24 37.16 0.34 -1.67 16 6 C 0.09 1.53 1.71 -67.88 -0.12 1.41 16 7 H 0.08 1.34 7.53 -51.93 -0.39 0.94 16 8 C -0.08 -1.31 4.02 37.21 0.15 -1.16 16 9 S -0.30 -5.26 22.33 -107.50 -2.40 -7.66 16 10 C -0.07 -1.30 5.96 37.21 0.22 -1.08 16 11 C -0.09 -1.70 4.87 -26.89 -0.13 -1.83 16 12 C -0.13 -2.47 1.27 -91.05 -0.12 -2.59 16 13 H 0.08 1.48 4.50 -51.93 -0.23 1.24 16 14 C 0.02 0.35 2.60 -27.88 -0.07 0.28 16 15 C -0.52 -13.31 7.81 -34.44 -0.27 -13.58 16 16 H 0.05 1.39 6.39 -52.49 -0.34 1.05 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 19 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.05 0.66 6.97 -51.93 -0.36 0.30 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.33 4.91 -51.93 -0.26 1.08 16 27 H 0.07 1.31 5.08 -51.93 -0.26 1.04 16 28 H 0.07 0.96 6.89 -51.93 -0.36 0.61 16 29 H 0.06 1.02 5.34 -51.93 -0.28 0.74 16 30 H 0.06 0.82 6.02 -51.93 -0.31 0.51 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.95 4.26 -51.93 -0.22 1.73 16 34 H 0.10 1.52 8.10 -51.93 -0.42 1.10 16 35 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 36 H 0.11 2.38 5.78 -51.93 -0.30 2.08 16 37 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 38 H 0.08 1.42 6.69 -51.93 -0.35 1.08 16 39 H 0.03 0.67 4.27 -51.93 -0.22 0.45 16 40 H 0.02 0.56 4.50 -51.93 -0.23 0.33 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -26.47 297.64 -9.20 -35.67 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.20 Total: 5.06 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 0.25 Total: -19.38 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: -0.31 Total: -34.01 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -2.40 Total: -7.66 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.47 -9.20 -35.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.236 kcal (2) G-P(sol) polarization free energy of solvation -26.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds