Wall clock time and date at job start Mon Mar 30 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46899 * 109.46987 * 2 1 4 4 C 1.46903 * 111.00054 * 77.75699 * 3 2 1 5 5 C 1.53007 * 109.47042 * 183.78889 * 4 3 2 6 6 C 1.46899 * 111.00074 * 201.71119 * 3 2 1 7 7 H 1.09000 * 109.39177 * 155.63715 * 6 3 2 8 8 C 1.53095 * 109.38989 * 35.83491 * 6 3 2 9 9 S 1.81758 * 108.83679 * 176.74549 * 8 6 3 10 10 C 1.81742 * 102.15744 * 53.39961 * 9 8 6 11 11 C 1.53102 * 108.84215 * 306.68402 * 10 9 8 12 12 C 1.52582 * 109.38954 * 275.43717 * 6 3 2 13 13 H 1.08997 * 109.22750 * 311.10584 * 12 6 3 14 14 C 1.52998 * 109.22432 * 70.50417 * 12 6 3 15 15 C 1.50699 * 109.47265 * 175.78425 * 14 12 6 16 16 H 1.08002 * 120.00138 * 359.97438 * 15 14 12 17 17 C 1.37877 * 120.00041 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00177 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99812 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47227 * 59.99963 * 19 17 15 21 21 H 1.48500 * 109.47148 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47314 * 300.00035 * 19 17 15 23 23 H 1.09000 * 109.46946 * 299.99692 * 1 2 3 24 24 H 1.08996 * 109.47242 * 60.00195 * 1 2 3 25 25 H 1.09005 * 109.46857 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46946 * 240.00308 * 2 1 3 27 27 H 1.08996 * 109.47242 * 119.99804 * 2 1 3 28 28 H 1.09001 * 109.46984 * 303.78807 * 4 3 2 29 29 H 1.08993 * 109.46876 * 63.78913 * 4 3 2 30 30 H 1.08992 * 109.46727 * 295.00871 * 5 4 3 31 31 H 1.08999 * 109.46794 * 55.00829 * 5 4 3 32 32 H 1.09003 * 109.46871 * 175.00948 * 5 4 3 33 33 H 1.08996 * 109.57872 * 296.63468 * 8 6 3 34 34 H 1.09003 * 109.57343 * 57.02115 * 8 6 3 35 35 H 1.09006 * 109.57490 * 186.88137 * 10 9 8 36 36 H 1.08998 * 109.57704 * 66.49935 * 10 9 8 37 37 H 1.08994 * 109.39224 * 302.87632 * 11 10 9 38 38 H 1.08999 * 109.30708 * 183.12047 * 11 10 9 39 39 H 1.09007 * 109.47209 * 295.78436 * 14 12 6 40 40 H 1.09005 * 109.47518 * 55.78254 * 14 12 6 41 41 H 0.96995 * 120.00107 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9210 1.9783 1.3403 5 6 2.3499 3.4458 1.2812 6 6 3.3964 1.4567 -0.5073 7 1 3.5851 2.4550 -0.9022 8 6 3.5811 0.4253 -1.6236 9 16 5.2576 0.5924 -2.3055 10 6 6.2909 0.4696 -0.8154 11 6 5.8018 1.4946 0.2113 12 6 4.3713 1.1695 0.6308 13 1 4.1040 1.7783 1.4945 14 6 4.2812 -0.3100 1.0101 15 6 5.3141 -0.6227 2.0619 16 1 5.9696 0.1558 2.4234 17 6 5.4231 -1.9030 2.5619 18 7 4.6253 -2.8511 2.1214 19 14 6.7039 -2.2907 3.8652 20 1 6.4549 -1.4558 5.0678 21 1 6.6165 -3.7267 4.2334 22 1 8.0581 -1.9978 3.3310 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.8908 1.9147 1.6908 29 1 2.5723 1.4367 2.0261 30 1 3.4055 3.5053 1.0164 31 1 1.7568 3.9677 0.5302 32 1 2.1929 3.9097 2.2550 33 1 3.4484 -0.5782 -1.2193 34 1 2.8485 0.6039 -2.4106 35 1 7.3295 0.6777 -1.0730 36 1 6.2105 -0.5336 -0.3969 37 1 5.8323 2.4910 -0.2293 38 1 6.4509 1.4659 1.0865 39 1 3.2870 -0.5248 1.4020 40 1 4.4641 -0.9231 0.1276 41 1 4.7022 -3.7519 2.4729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259786132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:17 Heat of formation + Delta-G solvation = -6.987280 kcal Electronic energy + Delta-G solvation = -19123.837003 eV Core-core repulsion = 16550.497865 eV Total energy + Delta-G solvation = -2573.339138 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.08513 -36.66640 -34.55600 -33.13181 -32.08179 -30.29455 -28.67706 -27.45906 -25.24079 -23.91837 -23.64656 -21.40612 -19.36996 -18.44202 -17.87368 -17.15926 -16.48559 -16.20580 -15.96326 -15.72995 -15.13610 -14.73003 -14.31706 -14.10241 -13.86072 -13.55521 -13.22396 -13.19273 -12.98439 -12.87764 -12.64554 -12.55334 -12.44410 -12.34880 -12.17029 -11.86913 -11.56598 -11.43578 -11.36375 -11.11841 -10.83439 -10.55583 -10.45791 -9.04378 -8.58165 -8.16252 -6.23124 0.94146 1.37419 1.37812 1.44872 1.61272 2.39708 3.12833 3.17681 3.72719 3.90236 4.06533 4.10290 4.19343 4.36623 4.38984 4.40216 4.51912 4.60880 4.66779 4.73286 4.75865 4.77452 4.88347 4.95599 5.06702 5.09331 5.11826 5.16503 5.21055 5.30413 5.37956 5.41174 5.49592 5.60694 5.80817 5.90555 6.19279 6.20711 6.33570 6.91942 7.43916 8.93549 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.009030 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.934380 B = 3100.122473 C = 3709.244075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.024 3.976 3 N -0.515 5.515 4 C 0.040 3.960 5 C -0.142 4.142 6 C 0.099 3.901 7 H 0.094 0.906 8 C -0.073 4.073 9 S -0.285 6.285 10 C -0.070 4.070 11 C -0.091 4.091 12 C -0.124 4.124 13 H 0.077 0.923 14 C 0.030 3.970 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.945 3.055 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.270 1.270 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.025 0.975 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.006 0.994 40 H 0.001 0.999 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 9.758 -4.485 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 N -0.239 5.239 4 C -0.088 4.088 5 C -0.199 4.199 6 C -0.011 4.011 7 H 0.112 0.888 8 C -0.221 4.221 9 S -0.059 6.059 10 C -0.218 4.218 11 C -0.131 4.131 12 C -0.143 4.143 13 H 0.095 0.905 14 C -0.006 4.006 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.190 4.190 18 N -0.569 5.569 19 Si 0.771 3.229 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.195 1.195 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.024 0.976 40 H 0.019 0.981 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.991 9.982 -5.867 12.247 hybrid contribution 0.897 -1.617 2.669 3.247 sum -3.094 8.365 -3.197 9.475 Atomic orbital electron populations 1.21677 0.93663 1.01436 1.02308 1.22604 0.96940 0.89689 1.01193 1.62720 1.19423 1.17740 1.24057 1.22236 1.00925 0.96189 0.89411 1.21785 1.01402 0.94271 1.02448 1.21888 0.87777 0.98363 0.93082 0.88791 1.23799 0.94722 1.02364 1.01222 1.86275 1.04856 1.96501 1.18264 1.23437 1.00232 1.03605 0.94566 1.21476 0.96434 0.97349 0.97807 1.21873 0.95048 0.98983 0.98415 0.90504 1.19387 0.95642 0.90802 0.94797 1.21586 1.18069 0.94479 1.21869 0.92486 1.25729 0.97811 0.96727 0.98759 1.70058 1.39891 1.02154 1.44766 0.85808 0.80190 0.76835 0.80073 1.19701 1.21558 1.19490 0.92869 0.91364 0.92335 0.90787 0.95390 0.90509 0.95692 0.92987 0.91271 0.91362 0.90467 0.86816 0.87634 0.90983 0.90608 0.91599 0.97583 0.98088 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 10.05 71.98 0.72 -2.86 16 2 C 0.02 0.79 4.35 86.31 0.38 1.17 16 3 N -0.52 -16.02 4.63 -871.60 -4.03 -20.06 16 4 C 0.04 1.21 4.88 86.30 0.42 1.63 16 5 C -0.14 -3.48 9.24 71.98 0.67 -2.81 16 6 C 0.10 3.20 1.71 44.81 0.08 3.28 16 7 H 0.09 2.87 7.53 -2.39 -0.02 2.86 16 8 C -0.07 -2.45 4.02 72.01 0.29 -2.16 16 9 S -0.29 -9.67 22.33 -56.49 -1.26 -10.93 16 10 C -0.07 -2.55 5.96 72.02 0.43 -2.12 16 11 C -0.09 -3.17 4.87 30.49 0.15 -3.02 16 12 C -0.12 -4.60 1.27 -11.07 -0.01 -4.61 16 13 H 0.08 2.90 4.50 -2.39 -0.01 2.89 16 14 C 0.03 1.42 2.60 29.85 0.08 1.50 16 15 C -0.52 -27.37 7.81 25.60 0.20 -27.17 16 16 H 0.06 2.91 6.39 -2.91 -0.02 2.89 16 17 C 0.01 0.42 5.46 84.66 0.46 0.88 16 18 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 19 Si 0.94 43.30 29.54 68.60 2.03 45.33 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 H 0.05 1.37 6.97 -2.39 -0.02 1.35 16 24 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.07 2.53 4.91 -2.39 -0.01 2.52 16 27 H 0.03 1.17 5.08 -2.39 -0.01 1.15 16 28 H 0.08 2.13 6.89 -2.39 -0.02 2.11 16 29 H 0.02 0.91 5.34 -2.39 -0.01 0.90 16 30 H 0.05 1.34 6.02 -2.39 -0.01 1.32 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 3.02 4.26 -2.39 -0.01 3.01 16 34 H 0.11 3.41 8.10 -2.39 -0.02 3.39 16 35 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 36 H 0.07 3.18 5.78 -2.39 -0.01 3.17 16 37 H 0.08 2.27 8.06 -2.39 -0.02 2.25 16 38 H 0.07 2.41 6.69 -2.39 -0.02 2.40 16 39 H 0.01 0.32 4.27 -2.38 -0.01 0.31 16 40 H 0.00 0.05 4.50 -2.38 -0.01 0.04 16 41 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -57.28 297.64 1.89 -55.39 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 1.02 Total: 20.58 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 3.85 Total: -36.31 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -3.75 Total: -74.06 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.26 Total: -10.93 kcal Total: -57.28 1.89 -55.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.403 kcal (2) G-P(sol) polarization free energy of solvation -57.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds