Wall clock time and date at job start Mon Mar 30 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47362 * 2 1 4 4 C 1.46908 * 110.99722 * 66.04566 * 3 2 1 5 5 C 1.53005 * 109.46711 * 214.22795 * 4 3 2 6 6 C 1.46895 * 110.99969 * 189.99835 * 3 2 1 7 7 H 1.08997 * 109.39134 * 50.61559 * 6 3 2 8 8 C 1.52579 * 109.39452 * 290.80844 * 6 3 2 9 9 C 1.52407 * 110.82254 * 169.15583 * 8 6 3 10 10 C 1.53095 * 109.89144 * 70.76421 * 9 8 6 11 11 S 1.81748 * 108.83867 * 296.97830 * 10 9 8 12 12 C 1.53097 * 109.38784 * 170.41104 * 6 3 2 13 13 H 1.08999 * 109.57880 * 63.14139 * 12 6 3 14 14 C 1.52995 * 109.57924 * 302.88384 * 12 6 3 15 15 C 1.50700 * 109.47603 * 174.99952 * 14 12 6 16 16 H 1.08003 * 119.99863 * 0.02562 * 15 14 12 17 17 C 1.37873 * 120.00389 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99832 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00137 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46779 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46972 * 119.99723 * 19 17 15 22 22 H 1.48496 * 109.47194 * 240.00221 * 19 17 15 23 23 H 1.08994 * 109.47539 * 60.00052 * 1 2 3 24 24 H 1.09003 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47396 * 300.00087 * 1 2 3 26 26 H 1.08996 * 109.46960 * 239.99732 * 2 1 3 27 27 H 1.09006 * 109.46881 * 119.99851 * 2 1 3 28 28 H 1.08997 * 109.47435 * 334.22675 * 4 3 2 29 29 H 1.08999 * 109.46884 * 94.22906 * 4 3 2 30 30 H 1.08997 * 109.47239 * 65.43178 * 5 4 3 31 31 H 1.08998 * 109.46604 * 185.43134 * 5 4 3 32 32 H 1.09002 * 109.46935 * 305.43112 * 5 4 3 33 33 H 1.09002 * 109.22606 * 289.60158 * 8 6 3 34 34 H 1.09000 * 109.22410 * 48.95132 * 8 6 3 35 35 H 1.08999 * 109.41764 * 310.63344 * 9 8 6 36 36 H 1.09003 * 109.42366 * 190.89197 * 9 8 6 37 37 H 1.08993 * 109.57613 * 177.16988 * 10 9 8 38 38 H 1.08994 * 109.68085 * 56.84579 * 10 9 8 39 39 H 1.08998 * 109.47066 * 294.99936 * 14 12 6 40 40 H 1.09002 * 109.47069 * 54.99892 * 14 12 6 41 41 H 0.97003 * 119.99874 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0669 1.2534 5 6 1.3846 3.5428 0.9684 6 6 3.4685 1.4310 -0.2381 7 1 3.7094 0.8374 -1.1199 8 6 4.1994 0.8589 0.9729 9 6 5.6757 0.6424 0.6622 10 6 6.3869 1.9931 0.5458 11 16 5.6761 2.9122 -0.8519 12 6 3.8997 2.8817 -0.4688 13 1 3.7081 3.4672 0.4305 14 6 3.1124 3.4704 -1.6411 15 6 3.4482 4.9321 -1.7884 16 1 4.1532 5.3949 -1.1135 17 6 2.8556 5.6787 -2.7845 18 7 1.9977 5.1151 -3.6066 19 14 3.2715 7.4908 -2.9666 20 1 4.2569 7.8794 -1.9259 21 1 3.8517 7.7327 -4.3119 22 1 2.0369 8.3004 -2.8070 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.7838 1.6020 1.6850 29 1 2.5008 1.9863 1.9546 30 1 0.4949 3.6268 0.3444 31 1 1.2199 4.0690 1.9087 32 1 2.2355 3.9838 0.4493 33 1 4.1054 1.5516 1.8091 34 1 3.7491 -0.0954 1.2460 35 1 5.7723 0.1002 -0.2784 36 1 6.1330 0.0604 1.4623 37 1 7.4510 1.8319 0.3735 38 1 6.2479 2.5617 1.4652 39 1 3.3765 2.9429 -2.5576 40 1 2.0443 3.3602 -1.4533 41 1 1.5810 5.6403 -4.3077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259823189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:54 Heat of formation + Delta-G solvation = -3.208157 kcal Electronic energy + Delta-G solvation = -18700.632868 eV Core-core repulsion = 16127.457605 eV Total energy + Delta-G solvation = -2573.175263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.20464 -34.85984 -33.65928 -31.77999 -30.71758 -29.37835 -26.92407 -25.61417 -22.90159 -22.69497 -21.42633 -20.48466 -19.07161 -16.80851 -16.18688 -15.19918 -14.95647 -14.79705 -14.35539 -14.10321 -13.98547 -13.33722 -13.03200 -12.60871 -12.45253 -12.01580 -11.99537 -11.73441 -11.54490 -11.38532 -11.20210 -11.13553 -10.89342 -10.75885 -10.55718 -10.40093 -10.16409 -9.98898 -9.95261 -9.38892 -9.07326 -8.77791 -8.22591 -7.77018 -6.87282 -5.88302 -3.88212 2.48623 3.31606 3.39137 3.46517 3.51669 4.33942 4.55777 4.85295 4.94713 5.12762 5.21213 5.30888 5.40265 5.48848 5.54173 5.61399 5.63154 5.67977 5.77962 5.86930 5.93574 5.98794 6.00392 6.04842 6.13059 6.22119 6.25597 6.33624 6.44663 6.53983 6.63299 6.85313 7.14430 7.50346 7.52973 7.84626 7.92710 8.13769 8.50401 9.17775 9.73975 11.22533 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.008559 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.981369 B = 3270.774773 C = 4312.303958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 N -0.516 5.516 4 C 0.043 3.957 5 C -0.166 4.166 6 C 0.090 3.910 7 H 0.086 0.914 8 C -0.162 4.162 9 C -0.111 4.111 10 C -0.106 4.106 11 S -0.240 6.240 12 C -0.026 4.026 13 H 0.082 0.918 14 C 0.044 3.956 15 C -0.512 4.512 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.885 3.115 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.286 1.286 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 -10.461 10.400 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 N -0.240 5.240 4 C -0.085 4.085 5 C -0.223 4.223 6 C -0.020 4.020 7 H 0.105 0.895 8 C -0.202 4.202 9 C -0.151 4.151 10 C -0.254 4.254 11 S -0.012 6.012 12 C -0.155 4.155 13 H 0.100 0.900 14 C 0.007 3.993 15 C -0.551 4.551 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.713 3.287 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.213 1.213 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.709 -9.689 8.991 13.328 hybrid contribution 0.008 0.040 1.554 1.555 sum 1.717 -9.649 10.546 14.397 Atomic orbital electron populations 1.21826 0.95150 1.00812 1.02797 1.22060 0.95857 0.89683 1.00060 1.62244 1.12771 1.14328 1.34623 1.22261 0.99387 0.96436 0.90379 1.22238 1.05052 0.94335 1.00679 1.22099 0.86095 0.97134 0.96705 0.89549 1.22240 0.96188 1.01243 1.00483 1.21585 0.94838 0.96478 1.02151 1.23466 1.02445 0.98262 1.01263 1.87425 1.08480 1.71971 1.33360 1.23744 0.90905 0.95634 1.05194 0.90005 1.19069 0.95938 0.94559 0.89778 1.21299 1.24467 0.94627 1.14658 0.92343 1.24930 0.95247 0.97972 0.95954 1.69982 1.29090 1.35773 1.18379 0.86641 0.78057 0.86033 0.77942 1.19734 1.21216 1.21282 0.91436 0.92911 0.92824 0.91046 0.95640 0.92002 0.94299 0.92177 0.94039 0.88515 0.91626 0.91876 0.90950 0.92081 0.88883 0.90948 0.96270 0.92286 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 37.16 0.37 -1.46 16 2 C 0.05 0.70 5.19 -3.83 -0.02 0.68 16 3 N -0.52 -8.38 3.47 -226.85 -0.79 -9.16 16 4 C 0.04 0.65 5.08 -3.82 -0.02 0.63 16 5 C -0.17 -2.87 8.78 37.16 0.33 -2.54 16 6 C 0.09 1.52 1.53 -67.88 -0.10 1.41 16 7 H 0.09 1.55 7.86 -51.93 -0.41 1.15 16 8 C -0.16 -2.24 4.16 -27.25 -0.11 -2.35 16 9 C -0.11 -1.43 5.75 -26.99 -0.16 -1.59 16 10 C -0.11 -1.54 6.45 37.21 0.24 -1.30 16 11 S -0.24 -4.74 21.06 -107.50 -2.26 -7.01 16 12 C -0.03 -0.53 1.39 -26.68 -0.04 -0.57 16 13 H 0.08 1.68 5.56 -51.93 -0.29 1.39 16 14 C 0.04 1.11 3.45 -27.89 -0.10 1.02 16 15 C -0.51 -14.18 8.29 -34.44 -0.29 -14.47 16 16 H 0.06 1.63 7.63 -52.48 -0.40 1.23 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 19 Si 0.88 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.64 6.30 -51.92 -0.33 0.32 16 26 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 27 H 0.03 0.31 6.79 -51.93 -0.35 -0.04 16 28 H 0.06 0.84 5.83 -51.93 -0.30 0.53 16 29 H 0.04 0.56 5.30 -51.93 -0.28 0.29 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 1.97 3.40 -51.93 -0.18 1.80 16 33 H 0.07 0.92 6.27 -51.93 -0.33 0.60 16 34 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 35 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.56 6.01 -51.93 -0.31 1.25 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 310.91 15.07 4.69 4.69 Total: -1.00 -29.24 310.91 -9.49 -38.74 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.85 Total: 0.64 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 0.01 Total: -18.93 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.05 Total: -35.15 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -2.26 Total: -7.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.24 -9.49 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.529 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds