Wall clock time and date at job start Mon Mar 30 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47362 * 2 1 4 4 C 1.46908 * 110.99722 * 66.04566 * 3 2 1 5 5 C 1.53005 * 109.46711 * 214.22795 * 4 3 2 6 6 C 1.46895 * 110.99969 * 189.99835 * 3 2 1 7 7 H 1.08997 * 109.39134 * 50.61559 * 6 3 2 8 8 C 1.52579 * 109.39452 * 290.80844 * 6 3 2 9 9 C 1.52407 * 110.82254 * 169.15583 * 8 6 3 10 10 C 1.53095 * 109.89144 * 70.76421 * 9 8 6 11 11 S 1.81748 * 108.83867 * 296.97830 * 10 9 8 12 12 C 1.53097 * 109.38784 * 170.41104 * 6 3 2 13 13 H 1.08999 * 109.57880 * 63.14139 * 12 6 3 14 14 C 1.52995 * 109.57924 * 302.88384 * 12 6 3 15 15 C 1.50700 * 109.47603 * 174.99952 * 14 12 6 16 16 H 1.08003 * 119.99863 * 0.02562 * 15 14 12 17 17 C 1.37873 * 120.00389 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99832 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00137 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46779 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46972 * 119.99723 * 19 17 15 22 22 H 1.48496 * 109.47194 * 240.00221 * 19 17 15 23 23 H 1.08994 * 109.47539 * 60.00052 * 1 2 3 24 24 H 1.09003 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47396 * 300.00087 * 1 2 3 26 26 H 1.08996 * 109.46960 * 239.99732 * 2 1 3 27 27 H 1.09006 * 109.46881 * 119.99851 * 2 1 3 28 28 H 1.08997 * 109.47435 * 334.22675 * 4 3 2 29 29 H 1.08999 * 109.46884 * 94.22906 * 4 3 2 30 30 H 1.08997 * 109.47239 * 65.43178 * 5 4 3 31 31 H 1.08998 * 109.46604 * 185.43134 * 5 4 3 32 32 H 1.09002 * 109.46935 * 305.43112 * 5 4 3 33 33 H 1.09002 * 109.22606 * 289.60158 * 8 6 3 34 34 H 1.09000 * 109.22410 * 48.95132 * 8 6 3 35 35 H 1.08999 * 109.41764 * 310.63344 * 9 8 6 36 36 H 1.09003 * 109.42366 * 190.89197 * 9 8 6 37 37 H 1.08993 * 109.57613 * 177.16988 * 10 9 8 38 38 H 1.08994 * 109.68085 * 56.84579 * 10 9 8 39 39 H 1.08998 * 109.47066 * 294.99936 * 14 12 6 40 40 H 1.09002 * 109.47069 * 54.99892 * 14 12 6 41 41 H 0.97003 * 119.99874 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0669 1.2534 5 6 1.3846 3.5428 0.9684 6 6 3.4685 1.4310 -0.2381 7 1 3.7094 0.8374 -1.1199 8 6 4.1994 0.8589 0.9729 9 6 5.6757 0.6424 0.6622 10 6 6.3869 1.9931 0.5458 11 16 5.6761 2.9122 -0.8519 12 6 3.8997 2.8817 -0.4688 13 1 3.7081 3.4672 0.4305 14 6 3.1124 3.4704 -1.6411 15 6 3.4482 4.9321 -1.7884 16 1 4.1532 5.3949 -1.1135 17 6 2.8556 5.6787 -2.7845 18 7 1.9977 5.1151 -3.6066 19 14 3.2715 7.4908 -2.9666 20 1 4.2569 7.8794 -1.9259 21 1 3.8517 7.7327 -4.3119 22 1 2.0369 8.3004 -2.8070 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.7838 1.6020 1.6850 29 1 2.5008 1.9863 1.9546 30 1 0.4949 3.6268 0.3444 31 1 1.2199 4.0690 1.9087 32 1 2.2355 3.9838 0.4493 33 1 4.1054 1.5516 1.8091 34 1 3.7491 -0.0954 1.2460 35 1 5.7723 0.1002 -0.2784 36 1 6.1330 0.0604 1.4623 37 1 7.4510 1.8319 0.3735 38 1 6.2479 2.5617 1.4652 39 1 3.3765 2.9429 -2.5576 40 1 2.0443 3.3602 -1.4533 41 1 1.5810 5.6403 -4.3077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:54 Heat of formation + Delta-G solvation = -19.781582 kcal Electronic energy + Delta-G solvation = -18701.351546 eV Core-core repulsion = 16127.457605 eV Total energy + Delta-G solvation = -2573.893940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48011 -36.01371 -35.56475 -33.42777 -32.11047 -30.81740 -28.15839 -27.39194 -24.37911 -24.12854 -22.57799 -22.05353 -20.39893 -18.35159 -18.13994 -16.65664 -16.35355 -16.21906 -15.86839 -15.39723 -15.23941 -14.67674 -14.51725 -14.10448 -13.86129 -13.52488 -13.35750 -13.05175 -13.01008 -12.81455 -12.73638 -12.43701 -12.35787 -12.30731 -11.99787 -11.82109 -11.75002 -11.54144 -11.33652 -11.17989 -11.02252 -10.51817 -10.24214 -8.98027 -8.44915 -8.09991 -6.16131 1.04657 1.38702 1.40285 1.52515 1.90192 2.45580 3.12709 3.24608 3.67016 3.82728 3.97241 4.10703 4.15004 4.30305 4.34476 4.36207 4.51182 4.57464 4.59788 4.65669 4.73693 4.84455 4.88632 4.92215 5.01874 5.03154 5.07178 5.13518 5.17667 5.24061 5.30943 5.42193 5.57215 5.69958 5.83716 5.98168 6.27969 6.31676 6.38827 6.98333 7.49439 9.01320 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.008559 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.981369 B = 3270.774773 C = 4312.303958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.545 5.545 4 C 0.049 3.951 5 C -0.162 4.162 6 C 0.097 3.903 7 H 0.067 0.933 8 C -0.153 4.153 9 C -0.107 4.107 10 C -0.082 4.082 11 S -0.316 6.316 12 C -0.008 4.008 13 H 0.078 0.922 14 C 0.063 3.937 15 C -0.516 4.516 16 H 0.053 0.947 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.949 3.051 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.279 1.279 23 H 0.041 0.959 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.082 0.918 39 H -0.025 1.025 40 H 0.039 0.961 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.322 -11.673 12.973 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 N -0.269 5.269 4 C -0.078 4.078 5 C -0.220 4.220 6 C -0.013 4.013 7 H 0.086 0.914 8 C -0.192 4.192 9 C -0.147 4.147 10 C -0.230 4.230 11 S -0.089 6.089 12 C -0.136 4.136 13 H 0.096 0.904 14 C 0.025 3.975 15 C -0.555 4.555 16 H 0.071 0.929 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.775 3.225 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.204 1.204 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.101 0.899 39 H -0.006 1.006 40 H 0.057 0.943 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.518 -10.906 11.574 16.101 hybrid contribution -0.221 0.389 0.766 0.887 sum 2.297 -10.516 12.340 16.376 Atomic orbital electron populations 1.21796 0.94396 1.02139 1.01778 1.22115 0.96411 0.88118 1.00879 1.62122 1.12513 1.16473 1.35800 1.22218 1.00830 0.94629 0.90132 1.22163 1.02407 0.96587 1.00827 1.21879 0.87211 0.94392 0.97829 0.91445 1.22139 0.96518 1.02025 0.98475 1.21584 0.94155 0.95591 1.03345 1.23539 1.03069 0.98199 0.98198 1.87533 1.09294 1.74272 1.37845 1.23391 0.90236 0.97769 1.02248 0.90375 1.18712 0.95580 0.93197 0.90014 1.21586 1.23696 0.96021 1.14170 0.92882 1.25753 0.95285 1.02398 0.95843 1.70109 1.30355 1.37442 1.19143 0.85635 0.78093 0.80891 0.77895 1.19019 1.20991 1.20439 0.93984 0.90406 0.92263 0.91635 0.93205 0.89868 0.92832 0.94485 0.91891 0.91890 0.91285 0.89627 0.91432 0.88272 0.86809 0.89887 1.00622 0.94311 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.89 71.98 0.71 -2.60 16 2 C 0.05 1.31 5.19 86.30 0.45 1.76 16 3 N -0.54 -17.38 3.47 -871.62 -3.02 -20.40 16 4 C 0.05 1.40 5.08 86.30 0.44 1.84 16 5 C -0.16 -5.65 8.78 71.98 0.63 -5.02 16 6 C 0.10 3.23 1.53 44.81 0.07 3.30 16 7 H 0.07 2.47 7.86 -2.39 -0.02 2.45 16 8 C -0.15 -3.71 4.16 30.26 0.13 -3.58 16 9 C -0.11 -2.37 5.75 30.43 0.17 -2.19 16 10 C -0.08 -2.15 6.45 72.01 0.46 -1.69 16 11 S -0.32 -12.61 21.06 -56.49 -1.19 -13.80 16 12 C -0.01 -0.33 1.39 30.62 0.04 -0.29 16 13 H 0.08 3.26 5.56 -2.39 -0.01 3.24 16 14 C 0.06 3.32 3.45 29.85 0.10 3.43 16 15 C -0.52 -29.76 8.29 25.60 0.21 -29.55 16 16 H 0.05 3.05 7.63 -2.91 -0.02 3.03 16 17 C 0.00 0.26 5.46 84.65 0.46 0.73 16 18 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 19 Si 0.95 46.31 29.54 68.60 2.03 48.33 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 23 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.29 6.30 -2.38 -0.02 1.27 16 26 H 0.07 1.71 7.94 -2.39 -0.02 1.69 16 27 H 0.05 1.03 6.79 -2.38 -0.02 1.01 16 28 H 0.08 2.02 5.83 -2.39 -0.01 2.01 16 29 H 0.05 1.39 5.30 -2.39 -0.01 1.37 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 2.64 3.40 -2.39 -0.01 2.63 16 33 H 0.07 1.67 6.27 -2.39 -0.01 1.66 16 34 H 0.09 1.75 6.43 -2.39 -0.02 1.73 16 35 H 0.07 1.60 8.06 -2.39 -0.02 1.58 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H -0.02 -1.50 8.14 -2.39 -0.02 -1.52 16 40 H 0.04 2.18 6.01 -2.39 -0.01 2.17 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -66.88 310.91 2.97 -63.91 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.99 Total: 13.39 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.88 Total: -33.86 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -2.74 Total: -77.97 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 16 Polarization: -12.61 SS G_CDS: -1.19 Total: -13.80 kcal Total: -66.88 2.97 -63.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.130 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds