Wall clock time and date at job start Mon Mar 30 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.46879 * 2 1 4 4 C 1.46904 * 111.00318 * 67.87375 * 3 2 1 5 5 C 1.53007 * 109.46885 * 68.08123 * 4 3 2 6 6 C 1.46903 * 110.99649 * 191.82624 * 3 2 1 7 7 H 1.08996 * 109.38990 * 305.94035 * 6 3 2 8 8 C 1.52585 * 109.39148 * 65.64258 * 6 3 2 9 9 C 1.52573 * 110.72676 * 190.82061 * 8 6 3 10 10 C 1.53097 * 109.96012 * 289.32772 * 9 8 6 11 11 S 1.81743 * 108.84208 * 63.02411 * 10 9 8 12 12 C 1.53097 * 109.38756 * 186.13750 * 6 3 2 13 13 H 1.08993 * 109.57720 * 56.89014 * 12 6 3 14 14 C 1.53001 * 109.57810 * 296.63408 * 12 6 3 15 15 C 1.50692 * 109.47208 * 175.00041 * 14 12 6 16 16 H 1.07995 * 120.00253 * 0.02562 * 15 14 12 17 17 C 1.37879 * 120.00063 * 179.97438 * 15 14 12 18 18 N 1.31516 * 120.00385 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99791 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47221 * 269.99700 * 19 17 15 21 21 H 1.48502 * 109.47398 * 29.99527 * 19 17 15 22 22 H 1.48497 * 109.47135 * 149.99867 * 19 17 15 23 23 H 1.08994 * 109.47165 * 293.64872 * 1 2 3 24 24 H 1.09003 * 109.46893 * 53.65348 * 1 2 3 25 25 H 1.09002 * 109.46899 * 173.65079 * 1 2 3 26 26 H 1.08997 * 109.47436 * 239.99878 * 2 1 3 27 27 H 1.09004 * 109.46664 * 119.99499 * 2 1 3 28 28 H 1.08992 * 109.46947 * 188.08509 * 4 3 2 29 29 H 1.09004 * 109.46735 * 308.08912 * 4 3 2 30 30 H 1.09003 * 109.47110 * 65.23491 * 5 4 3 31 31 H 1.08996 * 109.46776 * 185.23355 * 5 4 3 32 32 H 1.08996 * 109.47431 * 305.23089 * 5 4 3 33 33 H 1.08994 * 109.22592 * 311.14625 * 8 6 3 34 34 H 1.09002 * 109.22399 * 70.50149 * 8 6 3 35 35 H 1.09001 * 109.38898 * 49.47634 * 9 8 6 36 36 H 1.09003 * 109.38762 * 169.27474 * 9 8 6 37 37 H 1.09003 * 109.58013 * 182.83565 * 10 9 8 38 38 H 1.09006 * 109.57411 * 303.08759 * 10 9 8 39 39 H 1.08996 * 109.47035 * 54.99905 * 14 12 6 40 40 H 1.09005 * 109.46960 * 295.00322 * 14 12 6 41 41 H 0.96995 * 120.00211 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7081 2.0536 1.2704 5 6 2.5328 1.4228 2.3943 6 6 3.4607 1.4339 -0.2811 7 1 3.9883 0.7874 0.4201 8 6 3.7159 0.9484 -1.7049 9 6 5.2074 0.7321 -1.9425 10 6 5.9295 2.0812 -1.9940 11 16 5.7600 2.8995 -0.3801 12 6 3.9611 2.8720 -0.1218 13 1 3.7287 3.2306 0.8809 14 6 3.2807 3.7693 -1.1575 15 6 3.6806 5.2027 -0.9204 16 1 4.3531 5.4491 -0.1121 17 6 3.1887 6.1996 -1.7361 18 7 3.5380 7.4506 -1.5295 19 14 2.0261 5.7734 -3.1347 20 1 2.8113 5.4970 -4.3644 21 1 1.2351 4.5701 -2.7717 22 1 1.1075 6.9141 -3.3799 23 1 -0.3633 0.4122 0.9413 24 1 -0.3633 0.6091 -0.8278 25 1 -0.3633 -1.0214 -0.1137 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.9509 3.1133 1.1924 29 1 0.6467 1.9392 1.4904 30 1 3.5912 1.6179 2.2219 31 1 2.2347 1.8543 3.3498 32 1 2.3598 0.3468 2.4120 33 1 3.1871 0.0087 -1.8639 34 1 3.3443 1.6923 -2.4098 35 1 5.6197 0.1317 -1.1316 36 1 5.3512 0.2101 -2.8886 37 1 6.9852 1.9223 -2.2138 38 1 5.4846 2.7042 -2.7700 39 1 2.1988 3.6740 -1.0661 40 1 3.5887 3.4669 -2.1585 41 1 3.1917 8.1519 -2.1031 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259823195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:00 Heat of formation + Delta-G solvation = -3.168118 kcal Electronic energy + Delta-G solvation = -18822.754157 eV Core-core repulsion = 16249.580630 eV Total energy + Delta-G solvation = -2573.173527 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.29277 -35.41566 -33.27922 -31.84580 -30.81309 -29.45744 -27.13863 -25.79598 -23.76212 -22.36077 -21.56887 -20.36762 -18.45833 -16.87087 -16.74078 -15.61937 -15.07331 -14.71502 -14.27877 -14.15032 -13.79497 -13.23472 -13.05997 -12.85683 -12.61290 -12.43365 -12.20540 -12.01150 -11.72762 -11.49108 -11.45319 -11.32013 -11.17343 -10.81355 -10.62484 -10.47424 -10.28547 -10.00456 -9.69608 -9.59224 -9.25905 -8.78110 -8.42320 -7.94111 -6.80992 -5.92707 -3.87939 2.52185 3.20244 3.35635 3.43900 3.49500 4.20043 4.53831 4.92181 5.03062 5.08874 5.24891 5.31412 5.34136 5.40918 5.41483 5.46924 5.55547 5.64676 5.66276 5.69442 5.79103 5.91561 5.99426 6.06379 6.10699 6.14955 6.20663 6.21399 6.27397 6.34502 6.45158 6.49270 6.68134 7.26260 7.36463 7.39434 7.41180 7.87204 8.65157 9.15632 9.69444 11.20871 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.009295 C = 0.007722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.999004 B = 3011.550859 C = 3625.084913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 N -0.524 5.524 4 C 0.041 3.959 5 C -0.192 4.192 6 C 0.092 3.908 7 H 0.045 0.955 8 C -0.128 4.128 9 C -0.114 4.114 10 C -0.085 4.085 11 S -0.258 6.258 12 C -0.024 4.024 13 H 0.104 0.896 14 C 0.000 4.000 15 C -0.503 4.503 16 H 0.077 0.923 17 C 0.068 3.932 18 N -0.905 5.905 19 Si 0.868 3.132 20 H -0.281 1.281 21 H -0.262 1.262 22 H -0.290 1.290 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.039 0.961 40 H 0.012 0.988 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 -16.575 2.268 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 N -0.248 5.248 4 C -0.087 4.087 5 C -0.251 4.251 6 C -0.018 4.018 7 H 0.062 0.938 8 C -0.166 4.166 9 C -0.154 4.154 10 C -0.233 4.233 11 S -0.030 6.030 12 C -0.153 4.153 13 H 0.122 0.878 14 C -0.039 4.039 15 C -0.542 4.542 16 H 0.095 0.905 17 C -0.132 4.132 18 N -0.545 5.545 19 Si 0.696 3.304 20 H -0.207 1.207 21 H -0.186 1.186 22 H -0.216 1.216 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.057 0.943 40 H 0.030 0.970 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.597 -15.703 2.489 15.979 hybrid contribution -1.094 -0.902 -0.957 1.711 sum -2.691 -16.605 1.533 16.892 Atomic orbital electron populations 1.21778 0.95206 1.01025 1.02417 1.22163 0.95858 0.89993 1.00502 1.62243 1.14750 1.15215 1.32563 1.22292 0.99444 1.00285 0.86665 1.22449 1.01797 1.00828 0.99995 1.21865 0.87511 0.96287 0.96162 0.93755 1.21680 0.95589 1.01905 0.97425 1.21700 0.95372 0.96435 1.01864 1.23342 1.03386 0.98023 0.98598 1.86500 1.11615 1.79649 1.25209 1.23348 0.91493 0.95673 1.04780 0.87812 1.19766 0.96661 0.94871 0.92573 1.21117 1.27977 0.88960 1.16113 0.90536 1.24927 0.96163 0.94933 0.97222 1.69909 1.45361 0.99710 1.39503 0.86950 0.81790 0.78378 0.83271 1.20667 1.18617 1.21620 0.92876 0.91716 0.92866 0.90879 0.94961 0.89016 0.90906 0.92021 0.92310 0.93019 0.91711 0.90098 0.91437 0.91484 0.88826 0.89588 0.94252 0.96991 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.74 37.16 0.36 -1.26 16 2 C 0.04 0.53 5.43 -3.82 -0.02 0.51 16 3 N -0.52 -7.93 3.87 -226.83 -0.88 -8.81 16 4 C 0.04 0.60 5.30 -3.82 -0.02 0.58 16 5 C -0.19 -2.48 8.95 37.16 0.33 -2.15 16 6 C 0.09 1.46 0.84 -67.87 -0.06 1.40 16 7 H 0.04 0.69 6.85 -51.93 -0.36 0.34 16 8 C -0.13 -1.92 4.90 -27.16 -0.13 -2.05 16 9 C -0.11 -1.55 5.75 -26.90 -0.15 -1.70 16 10 C -0.09 -1.38 6.06 37.21 0.23 -1.15 16 11 S -0.26 -5.03 21.11 -107.50 -2.27 -7.30 16 12 C -0.02 -0.47 1.55 -26.68 -0.04 -0.52 16 13 H 0.10 2.11 5.42 -51.93 -0.28 1.83 16 14 C 0.00 -0.01 2.67 -27.89 -0.07 -0.08 16 15 C -0.50 -14.13 9.11 -34.44 -0.31 -14.44 16 16 H 0.08 2.36 7.88 -52.49 -0.41 1.95 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 19 Si 0.87 21.89 27.47 -169.99 -4.67 17.22 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H 0.05 0.57 6.74 -51.93 -0.35 0.22 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.87 5.85 -51.93 -0.30 0.56 16 27 H 0.03 0.38 6.16 -51.93 -0.32 0.06 16 28 H 0.09 1.59 6.07 -51.93 -0.32 1.27 16 29 H 0.07 0.97 6.36 -51.93 -0.33 0.64 16 30 H 0.06 0.88 6.05 -51.93 -0.31 0.56 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.61 6.28 -51.93 -0.33 0.29 16 33 H 0.06 0.84 5.90 -51.93 -0.31 0.54 16 34 H 0.08 1.40 5.95 -51.93 -0.31 1.09 16 35 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.54 7.30 -51.93 -0.38 1.16 16 39 H 0.04 0.95 6.39 -51.93 -0.33 0.62 16 40 H 0.01 0.28 4.69 -51.93 -0.24 0.04 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 303.88 15.07 4.58 4.58 Total: -1.00 -30.29 303.88 -9.03 -39.33 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.58 Total: 1.38 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 0.01 Total: -18.99 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.10 Total: -36.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Atomic # 16 Polarization: -5.03 SS G_CDS: -2.27 Total: -7.30 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.29 -9.03 -39.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.160 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds