Wall clock time and date at job start Mon Mar 30 2020 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.46879 * 2 1 4 4 C 1.46904 * 111.00318 * 67.87375 * 3 2 1 5 5 C 1.53007 * 109.46885 * 68.08123 * 4 3 2 6 6 C 1.46903 * 110.99649 * 191.82624 * 3 2 1 7 7 H 1.08996 * 109.38990 * 305.94035 * 6 3 2 8 8 C 1.52585 * 109.39148 * 65.64258 * 6 3 2 9 9 C 1.52573 * 110.72676 * 190.82061 * 8 6 3 10 10 C 1.53097 * 109.96012 * 289.32772 * 9 8 6 11 11 S 1.81743 * 108.84208 * 63.02411 * 10 9 8 12 12 C 1.53097 * 109.38756 * 186.13750 * 6 3 2 13 13 H 1.08993 * 109.57720 * 56.89014 * 12 6 3 14 14 C 1.53001 * 109.57810 * 296.63408 * 12 6 3 15 15 C 1.50692 * 109.47208 * 175.00041 * 14 12 6 16 16 H 1.07995 * 120.00253 * 0.02562 * 15 14 12 17 17 C 1.37879 * 120.00063 * 179.97438 * 15 14 12 18 18 N 1.31516 * 120.00385 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99791 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47221 * 269.99700 * 19 17 15 21 21 H 1.48502 * 109.47398 * 29.99527 * 19 17 15 22 22 H 1.48497 * 109.47135 * 149.99867 * 19 17 15 23 23 H 1.08994 * 109.47165 * 293.64872 * 1 2 3 24 24 H 1.09003 * 109.46893 * 53.65348 * 1 2 3 25 25 H 1.09002 * 109.46899 * 173.65079 * 1 2 3 26 26 H 1.08997 * 109.47436 * 239.99878 * 2 1 3 27 27 H 1.09004 * 109.46664 * 119.99499 * 2 1 3 28 28 H 1.08992 * 109.46947 * 188.08509 * 4 3 2 29 29 H 1.09004 * 109.46735 * 308.08912 * 4 3 2 30 30 H 1.09003 * 109.47110 * 65.23491 * 5 4 3 31 31 H 1.08996 * 109.46776 * 185.23355 * 5 4 3 32 32 H 1.08996 * 109.47431 * 305.23089 * 5 4 3 33 33 H 1.08994 * 109.22592 * 311.14625 * 8 6 3 34 34 H 1.09002 * 109.22399 * 70.50149 * 8 6 3 35 35 H 1.09001 * 109.38898 * 49.47634 * 9 8 6 36 36 H 1.09003 * 109.38762 * 169.27474 * 9 8 6 37 37 H 1.09003 * 109.58013 * 182.83565 * 10 9 8 38 38 H 1.09006 * 109.57411 * 303.08759 * 10 9 8 39 39 H 1.08996 * 109.47035 * 54.99905 * 14 12 6 40 40 H 1.09005 * 109.46960 * 295.00322 * 14 12 6 41 41 H 0.96995 * 120.00211 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7081 2.0536 1.2704 5 6 2.5328 1.4228 2.3943 6 6 3.4607 1.4339 -0.2811 7 1 3.9883 0.7874 0.4201 8 6 3.7159 0.9484 -1.7049 9 6 5.2074 0.7321 -1.9425 10 6 5.9295 2.0812 -1.9940 11 16 5.7600 2.8995 -0.3801 12 6 3.9611 2.8720 -0.1218 13 1 3.7287 3.2306 0.8809 14 6 3.2807 3.7693 -1.1575 15 6 3.6806 5.2027 -0.9204 16 1 4.3531 5.4491 -0.1121 17 6 3.1887 6.1996 -1.7361 18 7 3.5380 7.4506 -1.5295 19 14 2.0261 5.7734 -3.1347 20 1 2.8113 5.4970 -4.3644 21 1 1.2351 4.5701 -2.7717 22 1 1.1075 6.9141 -3.3799 23 1 -0.3633 0.4122 0.9413 24 1 -0.3633 0.6091 -0.8278 25 1 -0.3633 -1.0214 -0.1137 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.9509 3.1133 1.1924 29 1 0.6467 1.9392 1.4904 30 1 3.5912 1.6179 2.2219 31 1 2.2347 1.8543 3.3498 32 1 2.3598 0.3468 2.4120 33 1 3.1871 0.0087 -1.8639 34 1 3.3443 1.6923 -2.4098 35 1 5.6197 0.1317 -1.1316 36 1 5.3512 0.2101 -2.8886 37 1 6.9852 1.9223 -2.2138 38 1 5.4846 2.7042 -2.7700 39 1 2.1988 3.6740 -1.0661 40 1 3.5887 3.4669 -2.1585 41 1 3.1917 8.1519 -2.1031 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:59 Heat of formation + Delta-G solvation = -21.576269 kcal Electronic energy + Delta-G solvation = -18823.552394 eV Core-core repulsion = 16249.580630 eV Total energy + Delta-G solvation = -2573.971764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51953 -36.64309 -35.17232 -33.42494 -32.05817 -30.89426 -28.35177 -27.44991 -24.89859 -23.91856 -22.94700 -21.62978 -19.78424 -18.90947 -18.16739 -16.79124 -16.57432 -16.16140 -15.73114 -15.44318 -15.27579 -14.76204 -14.39715 -14.19769 -14.02146 -13.88295 -13.56718 -13.24307 -13.03768 -12.93172 -12.71218 -12.51104 -12.40388 -12.28757 -11.91506 -11.85696 -11.79607 -11.55518 -11.37949 -11.18237 -11.14879 -10.67685 -10.35322 -9.08319 -8.39992 -8.20198 -6.20315 1.05402 1.33837 1.36776 1.49191 1.76936 2.39257 3.05918 3.15611 3.72176 3.81140 4.01679 4.06892 4.13185 4.30632 4.31732 4.38244 4.41197 4.48679 4.56862 4.63419 4.71283 4.74865 4.80742 4.85996 4.99243 5.04835 5.06601 5.10230 5.16566 5.21522 5.23321 5.32221 5.41096 5.48971 5.51832 5.71548 6.19975 6.31428 6.38154 6.85331 7.40120 8.96370 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.009295 C = 0.007722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.999004 B = 3011.550859 C = 3625.084913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.540 5.540 4 C 0.042 3.958 5 C -0.182 4.182 6 C 0.103 3.897 7 H 0.054 0.946 8 C -0.128 4.128 9 C -0.106 4.106 10 C -0.074 4.074 11 S -0.314 6.314 12 C -0.012 4.012 13 H 0.085 0.915 14 C 0.015 3.985 15 C -0.502 4.502 16 H 0.032 0.968 17 C 0.006 3.994 18 N -0.954 5.954 19 Si 0.938 3.062 20 H -0.271 1.271 21 H -0.245 1.245 22 H -0.288 1.288 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.014 0.986 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -19.991 1.168 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 N -0.265 5.265 4 C -0.086 4.086 5 C -0.241 4.241 6 C -0.007 4.007 7 H 0.072 0.928 8 C -0.165 4.165 9 C -0.145 4.145 10 C -0.222 4.222 11 S -0.087 6.087 12 C -0.141 4.141 13 H 0.104 0.896 14 C -0.024 4.024 15 C -0.541 4.541 16 H 0.051 0.949 17 C -0.190 4.190 18 N -0.596 5.596 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.169 1.169 22 H -0.214 1.214 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.134 0.866 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.601 -19.147 1.398 19.373 hybrid contribution -0.723 0.199 -0.547 0.928 sum -3.324 -18.948 0.851 19.256 Atomic orbital electron populations 1.21753 0.94268 1.02187 1.01826 1.22259 0.96562 0.88132 1.01456 1.62244 1.14049 1.17381 1.32849 1.22199 1.00534 0.98377 0.87453 1.22343 1.00278 1.01788 0.99689 1.21702 0.88228 0.93369 0.97443 0.92829 1.21699 0.96863 1.02380 0.95577 1.21684 0.93933 0.94840 1.04086 1.23461 1.05162 0.98764 0.94779 1.86660 1.12287 1.81080 1.28648 1.23144 0.90846 0.97683 1.02445 0.89648 1.19544 0.96460 0.92554 0.93812 1.21372 1.26493 0.91785 1.14416 0.94926 1.25832 0.98203 0.94658 1.00296 1.70074 1.47354 1.01027 1.41194 0.85836 0.79575 0.78609 0.79733 1.19693 1.16887 1.21396 0.92858 0.93161 0.90588 0.89915 0.93836 0.92707 0.89497 0.93745 0.91448 0.91218 0.88918 0.92544 0.90090 0.88248 0.86602 0.91533 0.94751 0.96799 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.74 71.98 0.70 -2.00 16 2 C 0.04 0.91 5.43 86.30 0.47 1.38 16 3 N -0.54 -15.36 3.87 -871.56 -3.37 -18.74 16 4 C 0.04 1.21 5.30 86.30 0.46 1.67 16 5 C -0.18 -4.48 8.95 71.98 0.64 -3.84 16 6 C 0.10 3.09 0.84 44.81 0.04 3.13 16 7 H 0.05 1.55 6.85 -2.39 -0.02 1.53 16 8 C -0.13 -3.42 4.90 30.31 0.15 -3.28 16 9 C -0.11 -2.50 5.75 30.49 0.18 -2.32 16 10 C -0.07 -2.26 6.06 72.01 0.44 -1.82 16 11 S -0.31 -12.43 21.11 -56.49 -1.19 -13.62 16 12 C -0.01 -0.49 1.55 30.63 0.05 -0.45 16 13 H 0.09 3.65 5.42 -2.39 -0.01 3.64 16 14 C 0.01 0.70 2.67 29.85 0.08 0.78 16 15 C -0.50 -29.34 9.11 25.60 0.23 -29.11 16 16 H 0.03 2.14 7.88 -2.91 -0.02 2.12 16 17 C 0.01 0.34 5.47 84.65 0.46 0.81 16 18 N -0.95 -61.62 13.96 21.45 0.30 -61.32 16 19 Si 0.94 45.67 27.47 68.60 1.88 47.55 16 20 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 23 H 0.05 1.00 6.74 -2.39 -0.02 0.98 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.60 5.85 -2.39 -0.01 1.58 16 27 H 0.04 0.84 6.16 -2.39 -0.01 0.83 16 28 H 0.05 1.96 6.07 -2.39 -0.01 1.95 16 29 H 0.09 2.20 6.36 -2.39 -0.02 2.18 16 30 H 0.04 1.24 6.05 -2.39 -0.01 1.22 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.46 6.28 -2.39 -0.01 1.44 16 33 H 0.09 1.99 5.90 -2.39 -0.01 1.98 16 34 H 0.06 1.82 5.95 -2.39 -0.01 1.80 16 35 H 0.08 1.76 8.05 -2.39 -0.02 1.74 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.07 2.30 7.30 -2.38 -0.02 2.29 16 39 H 0.03 1.66 6.39 -2.39 -0.02 1.64 16 40 H 0.01 0.65 4.69 -2.38 -0.01 0.64 16 41 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -68.31 303.88 2.46 -65.85 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.95 Total: 15.33 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.89 Total: -35.05 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -3.07 Total: -80.06 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.55 kcal Atomic # 16 Polarization: -12.43 SS G_CDS: -1.19 Total: -13.62 kcal Total: -68.31 2.46 -65.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.274 kcal (2) G-P(sol) polarization free energy of solvation -68.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds